PyTorch Implementation of "Resource Efficient 3D Convolutional Neural Networks", codes and pretrained models.

Scikit-learn compatible decision trees beyond those offered in scikit-learn

ilastik-shell, applets, and workflows to string them together.

elastic fda python code

Curve Matching using the Square Root Velocity Functions

ilastik plugin for napari

WebGL-based viewer for volumetric data

Method container for computational neuroscience on brains.

NeuroData Talks

Template for an academic poster using Marp

A paper investigating bilateral symmetry of connectome networks.

CloudReg

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Read and write Neuroglancer datasets programmatically.

A napari plugin for making animations

napari: a fast, interactive, multi-dimensional image viewer for python

Collection of educational resources. Primarily focused on skills that are helpful in the NeuroData lab or the Neuro Data Design course at Johns Hopkins University.

Python package for multivariate hypothesis testing

Download files from Google Drive using Python 2 or Python 3

build net work from skeleton image (2D-3D)

Python package for graph statistics