Code and report for a small tool to optimize 16S sequencing pipelines

Microbiome Abundance Analysis

Data from ecological studies about how the climate change drives the microbial community dinamycs in aquatic ecosystems

A simple script to detect chimeric sequences in 16S/18S metagenomic samples.

Super fast script for classifying metagenomic 16S/18S sequences

This website gives an introduction to microbial community analysis.

code to reproduce AIH results

Microbiome Study of Lupus Patients

Code that was used to generate figures for the Mahmoudi et al., 2013 publication

Description of the metagenomic pipeline we have for analysis of 16S and 18S amplicon NGS

Analysis of Salmo trutta gametes and embryo microbiome project in Vals/Trun, Switzerland

🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM

Store results of 16S OTU clsuters to track and compare and analyze.

Companion notebooks for "Dog and human inflammatory bowel disease rely on overlapping yet distinct dysbiosis networks"

Tools for phylogenetic data analysis including visualization and cluster-computing support.

Some tools made along the way when analyzing 16S amplicon data and metagenomics processing code

Docker image running MOTHUR

A Collection of Bioinformatics Projects

A unified searchable database of 16S rRNA amplicon libraries

Fully reproducible paper: "Changes in the gut microbiota and fermentation products associated with enhanced longevity in acarbose-treated mice."