Library for clinical NLP with spaCy.
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Mar 6, 2025 - Jupyter Notebook
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clinical-nlp
Here are 32 public repositories matching this topic...
Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites
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Oct 17, 2023
A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks
llama medical-application biomedical-text-mining clinical-nlp medical- medical-question-answering gpt-4 large-language-models llm chatgpt biomedical-nlp llama2 medical-large-language-models
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Jan 15, 2025 - Python
Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation
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Aug 12, 2021 - Python
Multitask Learning with Pretrained Transformers
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Mar 20, 2021 - Python
[ACL 2024 Findings] This is the code for our paper "Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models".
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Jun 23, 2024 - Python
[NeurIPS 2022] Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Discharge/Patient Instructions"
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Jul 28, 2024 - Jupyter Notebook
Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts by leveraging the volume within large amounts of clinical notes.
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Jan 22, 2018
A rule-based Python module for spitting documents into sections.
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Nov 14, 2020 - Jupyter Notebook
The project is in the incubation stage and still under development. ForteHealth is a flexible and powerful ML workflow builder for biomedical and clinical scenarios. This is part of the CASL project: http://casl-project.ai/
python machine-learning natural-language-processing information-retrieval deep-learning natural-language data-processing biomedical-named-entity-recognition clinical-text-processing clinical-nlp
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Mar 22, 2023 - Python
Dilated Convolutional Attention Network for Medical Code Assignment from Clinical Text, ClinicalNLP workshop at EMNLP 2020
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Aug 19, 2021 - Python
Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recognition and linking methods such MedCAT.
medical named-entity-recognition snomed dutch umls hpo named-entity-linking medical-natural-language-processing clinical-nlp medcat medical-text-mining
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Jan 20, 2023 - Jupyter Notebook
Detecting the functioning level of a patient from a free-text clinical note in Dutch.
nlp dutch multi-label-classification electronic-health-records fine-tuning clinical-nlp regression-model simple-transformers who-icf
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Feb 2, 2022 - Jupyter Notebook
Official repo for "Characterizing Stigmatizing Language in Medical Records" (ACL 2023)
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Jun 17, 2024 - Python
A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework
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Nov 13, 2020 - Jupyter Notebook
AskDocs: A medical QA dataset
nlp qa clinical similarity sts english medical dataset question-answering semantic-similarity portuguese medical-natural-language-processing clinical-nlp
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Jun 29, 2022 - Jupyter Notebook
Estimate sentiment in clinical notes via keywords or deep learning models
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Sep 30, 2023 - Python
MedNLI Is Not Immune: Natural Language Inference Artifacts in the Clinical Domain (ACL-IJCNLP '21)
clinical-notes mimic-iii natural-language-inference nlp-machine-learning clinical-nlp mednlp adversarial-filtering annotation-artifacts
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Aug 6, 2021 - Python
Developing a system to match eligible patients to ongoing clinical trials using Vector Embeddings and LLMs!
sqlite clinical-trials llama embedding-models clinical-trial-management-system clinical-nlp llm chromadb llama3-2
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Mar 5, 2025 - Python
SpaCy component for modifying the string of a doc before tokenizing.
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Oct 13, 2020 - Python
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