LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
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Updated
Nov 24, 2022 - R
LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.
Experimental design framework for scRNAseq population studies (eQTL and DE)
Using real genotype data, simulate a complex trait as a function of latent expression, fit eQTL weights in independent data, and perform GWAS/TWAS on complex trait.
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression
Older repo for MRLocus. See new website for software usage guide:
Software to perform multi-ancestry SNP fine-mapping on molecular data
NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
Tejaas - a tool for discovering trans-eQTLs
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
R package for "Multi-tissue Transcriptome-Wide Association Studies (MTWAS)"
Analysis of regulatory impacts of GWAS SNPs associated with psychiatric disorders and cognitive functioning.
Computationally efficient and statistically powerful software for detecting context-specific eQTL effects in multi-context genomic studies.
A workflow based on QTLtools to run cis- and trans-QTL analyses.
Analysis of regulatory impacts of autism-associated SNPs on biological pathways in the fetal and adult cortex.
Hierarchical probabilistic models for multiple gene/variant associations based on NGS data
Some workflows I wrote for my phd projects
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