RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
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Updated
May 30, 2021 - Python
RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
⛓ Correct misassemblies using linked AND long reads
Suite of tools for use in genome assembly and consensus. Work in progress.
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
🍶 Genome assembly with short sequence reads
⛓️ Construct a Physical Map from Linked Reads
Pipeline for genome scaffolding by modelling distributions of HiC pairs
A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.
Method for rescuing collapsed contigs.
Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules
Wrapper tool of RaGOO by CWL and Docker
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