Gene Set Enrichment Analysis Made Awesome

Gene set enrichment analysis with PHP

GSEA plugin for PathVisio

repo for various R-based tools

Useful R functions

Testing, development environment for a new project of KN BIBS

some scripts to process transcriptomics and Chip-seq data

Gene Set Enrichment Analysis and Over Representation Analysis analysis using R

Revisions to the GSEA-P R Application (Subramanian and Tamayo et al 2005)

A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries

RNA-seq Preprocessing for GSEA

Gene Set Enrichment Class Analysis for heterogeneous RNA sequencing data

Repository of R scripts for analysis of gene expression data

Heatmap with Gene Set Enrichment Analysis

Flexible gene set enrichment analysis

A use case of InterMine. I personally used it to grab gene lists associated with GOterms.

Thesis: Identifying significantly enriched gene sets with NMF-derived metagenes and their difference vectors

Analysis of Neuroblastoma cancer patients to analyse their susceptibility to SARS-CoV-2. This research was conducted as a part of a group project during our Bioinformatics and Theoretical Systems Biology MSc at Imperial College London.

As part of the DRPPM-PATH-SURVEIOR family, this R Shiny app aims to perform GSEA with a pre-ranked set of genes determined by hazard ratio

Differential expression (DE); gene set Enrichment Analysis (GSEA); single cell RNAseq studies (scRNAseq)