Learnable latent embeddings for joint behavioral and neural analysis - Official implementation of CEBRA

A publicly-editable collection of open computational neuroscience resources

Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

a visualization method for neural data

Interactive Brain Playground - Browser based tutorials on EEG with webbluetooth and muse

An introduction to the practicing neuroscientist to data analysis in Python

Just Another Tool for Online Studies

Robust video-based eye tracking using recursive estimation of pupil characteristics

Toolbox for analyzing behavioral videos and neural activity

Closed-loop behavioral experiment toolkit using pose estimation of body parts.

NeuroAI-UW seminar, a regular weekly seminar for the UW community, organized by NeuroAI Shlizerman Lab.

[NeurIPS'23 Spotlight] Official Repo for "Extraction and recovery of spatio-temporal structure in latent dynamics alignment with diffusion models"

A table containing imaging analysis tools for biology, with a focus on calcium imaging.

Tools and functions for neural data processing and analysis in python

Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

Gaussian-Processes Surrogate Optimisation in python

MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.

Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

Setting up C elegans as an RL environment.