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phenotype

Here are 18 public repositories matching this topic...

sbslee / pypgx

A Python package for pharmacogenomics (PGx) research

api cli phenotype pharmacogenomics pgx genotype structural-variation star-alleles cyp2d6 pharmacogenetics

Updated Feb 15, 2025
Python

Planteome / plant-trait-ontology

Explore the Plant Trait Ontology on the Planteome site.

owl obo phenotype obofoundry plant-trait-ontology plant-traits

Updated Jan 20, 2025
Python

GeneDx / txt2hpo

Python library for extracting HPO encoded phenotypes from text

python information-retrieval parsing phenotype phenotypes hpo medical-records phenotype-ontologies

Updated Apr 22, 2024
Python

phenopackets / phenopacket-format

disease phenotype monarchinitiative

Updated Aug 7, 2019
Python

shz9 / magenpy

Modeling and Analysis of (Statistical) Genetics data in python

gwas linkage-disequilibrium simulation phenotype prs genotype ldsc

Updated Jan 29, 2025
Python

nimh-dsst / dataset-phenotypes

Preparatory scripts for BIDS tabular phenotypic data in large neuroimaging datasets.

tabular-data abide dataset phenotypic data-dictionary phenotype datasets bids abcd ukb tabular hcp ukbiobank abide-data ukbb pnc hbn abcd-study nki

Updated Aug 1, 2023
Python

NCBI-Hackathons / Complex_Phenogeno

Mapping complex genotypes to phenotypic subclusters

phenotype variant-analysis visiting-bioinformatician

Updated Jan 31, 2018
Python

Delta4AI / OntoloViz

GUI for drug and phenotype ontology visualization

visualization gui bioinformatics discovery ontology mesh drug-discovery drug atc phenotype sunburst repurposing

Updated Sep 17, 2024
Python

mMap

PeltzLab-Stanford / mMap

Computational tool for prioritizing the genetic candidates based on the protein functional and regulatory features

mouse variants phenotype pathways single-cell strains genetic-candidates

Updated Dec 9, 2020
Python

robail-yasrab / RSML-to-Image

python image image-processing plants plant root image-classification phenotyping phenotype image-segmentation gt phenotype-prediction rootnav rootnav2 rsml annotataion root-phenotyping

Updated Jun 13, 2020
Python

binfalse / GEMtractor

Trim, extract, and convert GEMs

csv enzyme extract gml trim dot phenotype filtering graphml sbml metabolic-network genome-scale-models subnetwork

Updated Jun 8, 2021
Python

manojmw / MultiOmics-ExomeSeq-Phenotype

Main Repository for my MASTER'S THESIS PROJECT

machine-learning candidate-genes clustering variants phenotype interactome exome-sequencing mendelian multiomics monogenic

Updated Dec 13, 2022
Python

grimmlab / HeliantHome

HeliantHOME: a public and centralized database Home of a comprehensive collection of phenotypes for different Sunflower species

gwas images phenotype population-genetics

Updated Oct 22, 2024
Python

theosanderson / malaria_phenotype_papers

Using a GPT3-based classifier to identify malaria papers reporting phenotypes

machine-learning phenotype malaria

Updated Mar 7, 2025
Python

mrueda / pheno-search

Streamlined Searching in GA4GH-Standard Phenotypic and Clinical Data Repositories and Beyond

search elasticsearch json phenotype clinical-data beacon-v2 phenopackets-v2 beacon2-ri-tools pheno-lens pheno-search convert-pheno

Updated Mar 1, 2024
Python

monarch-initiative / monarch-trapi-kp

NCATS Translator ARA TRAPI wrapper for the Monarch Initiative system

translator openapi disease phenotype monarchinitiative trapi

Updated Sep 12, 2024
Python

yenon118 / PhenoDist

The PhenoDist pipeline is built for generating phenotype distributions for alleles in variant positions and utilizing statistical methods to test for variant position significance.

snakemake python3 phenotype beagle snpeff allele

Updated May 10, 2024
Python

thoughtworksarts / strangerVisions

Genotype-Phenotype Mapping

dna phenotype genotype 23andme

Updated Dec 29, 2016
Python

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