psi-blast

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mircare / Porter5

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Fast, state-of-the-art ab initio prediction of protein secondary structure in 3 and 8 classes

machine-learning deep-learning proteins secondary-structure psi-blast protein-structure-prediction hhblit

Updated May 21, 2020
C++

mircare / Brewery

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State-of-the-art ab initio prediction of 1D protein structure annotations

machine-learning deep-learning proteins protein-structure protein-sequences hhblits secondary-structure psi-blast solvent-accessible-surface-area contact-density torsion-angles

Updated Feb 28, 2021
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784221489 / DBP-PSSM

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DBP-PSSM

extract-features psi-blast dbp-pssm dna-binding-proteins pssm-matrix

Updated Nov 23, 2020
Python

PSSpred (Protein Secondary Structure prediction) is a simple neural network training algorithm for accurate protein secondary structure prediction. It first collects multiple sequence alignments using PSI-BLAST. Amino-acid frequence and log-odds data with Henikoff weights are then used to train secondary structure, separately, based on the Rumel…

protein prediction-algorithm psi-blast nerual-network protein-secondary-structure acid-frequence henikoff-weights