Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis
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Updated
May 17, 2021 - Shell
Best practice RNA-Seq analysis pipeline for reference-based RNA-Seq analysis
(formerly eelpond) an automated RNA-Seq workflow system
A comprehensive pipeline for RNAseq data analysis
Code, documentation, and tutorials for the DGD model trained on bulk RNA-Seq data.
Flujos de trabajos desarrollados y automatizados en el Inmegen para el procesamiento de datos genómicos y transcriptómicos.
Docker Integrated Comparison of Alternative Splicing (AS) Tools. Benchmarking AS tools and genomic alignment tools.
This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.
The TRMRNASeqTools is a SHELL and Python based pipeline designed for automatic general analysis for TRM sRNA sequencing data in supported plants.
Guide and links related to bulk and single-cell RNA-Seq experiments.
A script to analyze with DESeq2 data from Kallisto. You maybe are interested only in DESeq2 part and its analisis and representation :)
bulk-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
nf-pipeline template for custom data analysis, renders report
Simple Snakemake RNA-Seq pipeline
Custom workflow for analysis of RNAseq data
IMOM - A pipeline for interacting with, processing, and analyzing multi-OM datasets in phylogenetic and evolutionary context
A book that discusses topics and contains tutorials relevant to population genomics
Breast Cancer Survival Prediction
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