Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

Library for Digital Pathology Image Processing

Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021

Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024

A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

This is the official repository for our CVPR 2023 paper 'Task-Specific Fine-Tuning via Variational Information Bottleneck for Weakly-Supervised Pathology Whole Slide Image Classification'.

A pipeline to segment tissue from the background in histological images

DAS-MIL: Distilling Across Scales for MILClassification of Histological WSIs

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

Official Inplementation of 《WsiCaption: Multiple Instance Generation of Pathology Reports for Gigapixel Whole Slide Images》(MICCAI 2024 Oral/ Best Paper Candidate)

The code for Kernel attention transformer (KAT)

Word Sense Induction with BERT MLM

Image filters for digital pathology: detect pen marks, background, and artifacts. Use them for preprocessing towards deep learning

Whole Slide Image (WSI) Processing Library for Histopathological / Cytopathological Machine Learning Tasks

PFA-ScanNet: Pyramidal Feature Aggregation With Synergistic Learning for Breast Cancer Metastasis Analysis (Architecture Only Pytorch Implementation).

Toolkit for WSI preprocess, such as resample & zoom, mask, roi selection ect.

Simple prototype of converting whole slide image (WSI) to multiframe DICOM images

Survival Prediction for Gastric Cancer via Multimodal Learning of Whole Slide Images and Gene Expression -- BIBM 2022

Segment Anything for Histopathology

Rule-Based Thyroid Whole Slide Image Diagnosis