A Python package for neuron swc clustering and projection analysis.
pip install pyswcloader
The swc data format follows such specification: http://www.neuronland.org/NLMorphologyConverter/MorphologyFormats/SWC/Spec.html
Allen Institute annotated template brain: http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/ccf_2017/
Allen Institute brain annotation: http://api.brain-map.org/api/v2/structure_graph_download/1.json Allen Institute brain template mesh: http://download.alleninstitute.org/informatics-archive/current-release/mouse_ccf/annotation/ccf_2017/structure_meshes/ *Wang, Quanxin, et al. "The Allen mouse brain common coordinate framework: a 3D reference atlas." Cell 181.4 (2020): 936-953.