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@virtool

Virtool

Viral infection diagnostics using next-generation sequencing

Getting Started

See the Virtool documentation to get started with the latest version of Virtool 4.

Versions

Virtool is currently undergoing a major transformation into a cloud-native application. This will mean Virtool can scale work across multiple hosts and run natively in Kubernetes and public cloud providers.

Virtool 4 series should be used for now. This version will continue to receive bug and security fixes for the forseeable future.

Virtool 5 and later will comprise multiple containerized services that need to run together. A deployment and migration guide will be provided.

Support

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  1. virtool virtool Public

    Viral infection diagnostics using next-generation sequencing

    Python 44 22

  2. virtool-ui virtool-ui Public

    The browser frontend for Virtool

    TypeScript 4 6

  3. virtool-workflow virtool-workflow Public

    A framework for building Virtool workflows

    Python 3 10

  4. virtool-core virtool-core Public

    Core utilities for Virtool and associated packages

    Python 3 9

Repositories

Showing 10 of 33 repositories
  • ref-builder Public

    Build and maintain reference sets of pathogen genome sequences.

    virtool/ref-builder’s past year of commit activity
    Python 2 1 0 1 Updated Apr 12, 2025
  • virtool-ui Public

    The browser frontend for Virtool

    virtool/virtool-ui’s past year of commit activity
    TypeScript 4 6 0 1 Updated Apr 11, 2025
  • virtool Public

    Viral infection diagnostics using next-generation sequencing

    virtool/virtool’s past year of commit activity
    Python 44 MIT 22 8 2 Updated Apr 10, 2025
  • virtool.ca Public

    The new website for Virtool

    virtool/virtool.ca’s past year of commit activity
    MDX 2 6 0 0 Updated Apr 8, 2025
  • virtool-workflow Public

    A framework for building Virtool workflows

    virtool/virtool-workflow’s past year of commit activity
    Python 3 MIT 10 0 0 Updated Apr 7, 2025
  • tools Public
    virtool/tools’s past year of commit activity
    Dockerfile 0 0 0 1 Updated Apr 7, 2025
  • dev Public

    Developer tooling for Virtool.

    virtool/dev’s past year of commit activity
    Starlark 2 4 0 1 Updated Apr 7, 2025
  • virtool-core Public

    Core utilities for Virtool and associated packages

    virtool/virtool-core’s past year of commit activity
    Python 3 MIT 9 0 0 Updated Mar 24, 2025
  • ref-plant-viruses Public

    An official Virtool reference for plant viruses

    virtool/ref-plant-viruses’s past year of commit activity
    1 MIT 3 5 0 Updated Mar 21, 2025
  • ml-plant-viruses Public

    A machine learning model for detecting plant viruses.

    virtool/ml-plant-viruses’s past year of commit activity
    1 0 0 0 Updated Mar 17, 2025

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