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@xjtu-omics

xjtu-omics

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  1. SVision SVision Public

    Detecting genome structural variants with deep learning in single molecule sequencing

    Python 106 10

  2. ChineseQuartetGenome ChineseQuartetGenome Public

    Genome assembly and variant benchmarks for Chinese Quartet

    Python 3

  3. msisensor-pro msisensor-pro Public

    Microsatellite Instability (MSI) detection using high-throughput sequencing data.

    C++ 107 23

  4. Papaver-Genomics Papaver-Genomics Public

    The genomic data for Papaver species

    Visual Basic 6.0 3 5

  5. msisensor-rna msisensor-rna Public

    MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data

    Python 21 2

  6. STMiner STMiner Public

    Python 13 6

Repositories

Showing 10 of 48 repositories
  • ANNEVO Public
    xjtu-omics/ANNEVO’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Apr 7, 2025
  • msisensor-pro Public

    Microsatellite Instability (MSI) detection using high-throughput sequencing data.

    xjtu-omics/msisensor-pro’s past year of commit activity
    C++ 107 23 4 (1 issue needs help) 0 Updated Apr 2, 2025
  • STMiner Public
    xjtu-omics/STMiner’s past year of commit activity
    Python 13 GPL-3.0 6 0 0 Updated Apr 1, 2025
  • HiArch Public

    Measuring the high-order genome architectures (global folding and checkerboard) from Hi-C experiment

    xjtu-omics/HiArch’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 31, 2025
  • LTR_Stream Public
    xjtu-omics/LTR_Stream’s past year of commit activity
    Python 1 AGPL-3.0 0 0 0 Updated Mar 30, 2025
  • SpaKnit Public

    SpaKnit is a multimodal integration framework for spatial multi-omics data.

    xjtu-omics/SpaKnit’s past year of commit activity
    Jupyter Notebook 3 GPL-3.0 0 0 0 Updated Mar 27, 2025
  • msisensor-rna Public

    MSIsensor-RNA: Microsatellite instability detection using RNA sequencing data

    xjtu-omics/msisensor-rna’s past year of commit activity
    Python 21 2 5 (1 issue needs help) 0 Updated Feb 28, 2025
  • Papaver-Genomics Public

    The genomic data for Papaver species

    xjtu-omics/Papaver-Genomics’s past year of commit activity
    Visual Basic 6.0 3 5 0 0 Updated Jan 12, 2025
  • SVision Public

    Detecting genome structural variants with deep learning in single molecule sequencing

    xjtu-omics/SVision’s past year of commit activity
    Python 106 GPL-3.0 10 17 0 Updated Dec 28, 2024
  • SVision-pro Public
    xjtu-omics/SVision-pro’s past year of commit activity
    0 0 0 0 Updated Dec 28, 2024
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