J Mol Evol (2005) 61:620–626
DOI: 10.1007/s00239-004-0336-9
Mitogenomic Analyses Place the Gharial (Gavialis gangeticus) on the Crocodile
Tree and Provide Pre-K/T Divergence Times for Most Crocodilians
Axel Janke,1 Anette Gullberg,1 Sandrine Hughes,2,3 Ramesh K. Aggarwal,4 Ulfur Arnason1
1
Department of Cell and Organism Biology, Division of Evolutionary Molecular Systematics, University of Lund, Sölvegatan 29,
S-223 62 Lund, Sweden
2
Centre de Génétique Moléculaire et Cellulaire, CNRS UMR 5534, Université Claude Bernard Lyon 1, Bât. G. Mendel,
16 rue Raphael Dubois, 69622 Villeurbanne Cedex, France
3
Laboratoire d’Anthropologie des Populations du Passé, CNRS UMR 5199 PACEA, Université Bordeaux 1, Bât. B8 avenue des Facultés,
33405 Talence Cedex, France
4
Centre for Cellular and Molecular Biology, Uppal Road, Hyderabad 500 007, India
Received: 26 November 2004 / Accepted: 14 June 2005 [Reviewing Editor: Dr. Nicolas Galtier]
Abstract. Based on morphological analyses, extant
members of the order Crocodylia are divided into three
families, Alligatoridae, Crocodylidae, and Gavialidae.
Gavialidae includes one species, the gharial, Gavialis
gangeticus. In this study we have examined crocodilian
relationships in phylogenetic analyses of seven mitochondrial genomes that have been sequenced in their
entirety. The analyses did not support the morphologically acknowledged separate position of the gharial
in the crocodilian tree. Instead the gharial joined the
false gharial (Tomistoma schlegelii) on a common
branch that was shown to constitute a sister group to
traditional Crocodylidae (less Tomistoma). Thus, the
analyses suggest the recognition of only two Crocodylia families, Alligatoridae and Crocodylidae, with
the latter encompassing traditional Crocodylidae plus
Gavialis/Tomistoma. A molecular dating of the divergence between Alligatoridae and Crocodylidae suggests that this basal split among recent crocodilians
took place 140 million years before present, at the
Jurassic/Cretaceous boundary. The results suggest
that at least five crocodilian lineages survived the mass
extinction at the KT boundary.
Key words: Crocodylia — Molecular dating —
Mitochondrial DNA — Phylogeny — Reptiles
Correspondence to: Axel Janke; email: axel.janke@cob.lu.se
Introduction
Recent crocodilians constitute a small order, Crocodylia, within class Reptilia. The order includes only 23
living species. One might be inclined to think that this
low number of species would make it easy to reconstruct relationships among living crocodilians. This
has not been the case, however, as the morphological
evolution of the body shape within this group has
been slow. Hence the number of diagnostic morphological characters useful for phylogenetic analysis is
limited. Poe (1996) used about 160 characters to
examine the crocodilian relationships. However,
many are not found in all lineages. Only 12 cranial
characters were used when a noncrocodilian outgroup
was included in an analysis by Norell (1989). Three
primary families are commonly recognized within the
Crocodylia: the Alligatoridae (which includes the
genera Alligator, Caiman, Melanosuchus, and Paleosuchus), the Crocodylidae (Crocodylus, Osteolaemus, Tomistoma), and the Gavialidae, which includes
only one species, the gharial, Gavialis gangeticus.
The placement of the gharial on the crocodilian
tree and its relation to the false gharial, Tomistoma
schlegelii, have attracted considerable interest, as
phylogenies based on morphological and molecular
data are at odds. Morphological studies (e.g., Norell
1989; Tarsitano et al. 1989; Poe 1996) have favored a
placement of the two species in different families, the
621
Fig. 1. Schematic view of crocodilian relationships based on (a)
morphological and (b) molecular data.
gharial in the Gavialidae and the false gharial in the
Crocodylidae. In this scheme the gharial is placed
basal to all other recent crocodiles (Fig. 1a). In contrast to this, most molecular studies have recognized
Tomistoma and Gavialis as sister groups and placed
Gavialis/Tomistoma as the sister group of the Crocodylidae (Fig. 1b). This molecular relationship was
originally identified by Densmore (1983) in an
extensive immunological study that included all recent crocodilian species. Other molecular studies,
such as RFLP data (Densmore and White 1991),
fingerprint analysis (Aggarwal et al. 1994), and
analyses of a portion (267 nt including gaps) of the
mitochondrial (mt) 12S rRNA gene (Gatesy et al.
1993) have suggested the same relationships. However, some of the molecular studies (e.g., Gatesy et al.
1993; Hass et al. 1992; Poe 1996) did not include an
outgroup, were not statistically testable (Densmore
and White 1991), or used problematic methods like
UPGMA for tree construction (Aggarwal et al. 1994).
Crocodilian relationships were addressed more
recently in two molecular studies. The study by
Harshman et al. (2003) was based on a part of the cmyc nuclear gene, while that by Gatesy et al. (2003)
used a combination of the RAG-1 nuclear sequence
plus about 800 nt from portions of the mt 12S rRNA,
16S rRNA, and cytochrome b genes. The nuclear
sequences joined Gavialis and Tomistoma but the
position of the branch was not conclusively settled.
An analysis of the mt data set supported the tree
shown in Fig. 1b. A ‘‘supermatrix’’ including some
additional nuclear gene sequences, but lacking outgroup taxa to the crocodiles for most datasets, found
some support for a Gavialis/Tomistoma sister-group
relationship (Gatesy et al. 2004). However, without
an outgroup the phylogenetic position of the gharial
could not be conclusively determined.
Poe (1996) and Brochu (1997) examined the discrepancy between the morphological and the molecular findings related to crocodilian relationships.
However, this examination did not take into account
the generally limited amount of sequence data available at that time. Thus, the use of only 250 nt of the
12S rDNA gene may have affected the statistical
reliability of the analyses. Although the order Crocodylia is a very small group, the amount of sequence
data used to examine their internal relationships after
including an outgroup has hitherto been limited to
partial mitochondrial genes (240–450 nt) or highly
conserved nuclear genes (e.g., RAG-1), which may
contain insufficient phylogenetic information.
In order to increase the amount of molecular data
suitable for phylogenetic analysis and dating of
crocodilian relationships, we have sequenced the
complete mt genomes from four species: Crocodylus
niloticus (Nile crocodile), Crocodylus porosus (estuarine crocodile), Gavialis gangeticus (gharial), and
Tomistoma schlegelii (false gharial). This sampling
together with the previously published alligatorid
genomes (Janke and Arnason 1997; Janke et al. 2001;
Wu et al. unpublished; accession no. AF511507) allows examination of basal divergences within the
order Crocodylia, including the phylogenetic position
of Gavialis. In addition, we provide molecular estimates of all major divergences within the Crocodylia.
This issue was addressed by Brochu (1997), who
concluded inter alia that Crocodylidae and Alligatoridae had diverged in Late Cretaceous. This proposal
needs further examination, however, as the tree
underlying Brochu’s (1997) analysis is inconsistent
with the molecular tree found, for example, by
Densmore (1983).
Materials and Methods
Whole genomic crocodilian DNA was used to PCR amplify two
large mt fragments (9 and 7 kb, respectively) using conserved primer pairs (Table 1) with TAKARA LA-Taq polymerase. The 9-kb
fragment spans from the 12S rRNA gene to tRNA-Gly, while the
7-kb fragment spans from tRNA-Gly to tRNA-Phe. Specific
primers were designed to amplify the control region and the tRNAGly region using TAKARA Ex-Taq polymerase. The mt genomes
were sequenced with the BIG-DYE version 3 cycle sequencing kit
on an ABI Prism 3100 Genetic Analyzer using primer walking.
The phylogenetic analysis is based on the 12 H-strand encoded
protein-coding genes of the newly sequenced mt genomes of
Crocodylus niloticus (Nile crocodile; accession no. AJ810452),
Crocodylus porosus (estuarine crocodile; AJ810453), Gavialis
gangeticus (gharial; AJ810454), and Tomistoma schlegelii (false
gharial; AJ810455). The complete mt genomes of the Nile crocodile, estuarine crocodile, and gharial were sequenced, while the
sequences of a part of the control region of the false gharial remained undetermined. The new genomes were aligned to the 12 Hstrand encoded protein-coding genes of Caiman crocodylus (caiman; AJ404872), Alligator mississippiensis (alligator; Y13113),
Alligator sinensis (Chinese alligator; AF511507), Iguana iguana
(common iguana; AJ278511), Eumeces egregius (mole skink;
AB016606), Chelonia mydas (green turtle; AB012104), Chrysemys
picta (painted turtle; NC_002073), Corvus frugilegus (rook;
Y18522), Falco peregrinus (falcon; AF090338), Struthio camelus
(ostrich; Y12025), and Gallus gallus (chicken; X52392). The alignment included, in addition, four mammals: Bos taurus (cow;
V00654), Didelphis virginiana (opossum; Z29573), Macropus robustus (wallaroo; Y10524), and Mus musculus (mouse; J01420). The
amniote tree was rooted with the amphibian, Xenopus laevis
622
Table 1. Conserved primers that were used to amplify crocodilian
mtDNA
Location
Name/gene
Sequence 5¢–3¢
457
4,990
9,435
9,443
15,620
15,452
CroL12SRNA
CroLtTrp
CroHtGly
CroLtGly
CroHtPhe
CroHtThr
GGGATTAGATACCCCACTAT
AAGCCAAGGGCCTTCAAAG
GGGTTTAATGATTGGAAGT
AATACAAATGACTTCCAAT
CCATGTTAACATTTTCAG
CCAYYTCTGTCTTACAAGG
Note. Locations refer to the 3¢ end of the primer in the American
alligator mt genome (accession no. Y13113). H and L denote the
orientation of the primer according to the H and L strand of the mt
genome, and 12S rRNA, tTrp, etc., refer to the 12S rRNA gene or
the respective tRNA gene where the primer is located.
(African clawed frog; NC_001573). The alignment was inspected
manually. After excluding gaps and alignment-ambiguous sites
around gaps, 9489 nt sites remained for phylogenetic analysis. The
third codon positions were excluded from the analysis of nt sequences.
Phylogenetic relationships were analyzed using the TREEPUZZLE (Strimmer and von Haeseler 1996), PHYLIP (Felsenstein
1993), MOLPHY (Adachi and Hasegawa 1996), MrBayes (Huelsenbeck and Ronquist 2001), and PAL/VANILLA (Drummond
and Strimmer 2001) program packages. The mtREV-24 model of
amino acid (aa) sequence evolution (Adachi and Hasegawa 1996)
and the TN-93 model of nt evolution (Tamura and Nei 1993) were
used for distance and likelihood analyses. Although more parameter-rich models fitted the nt sequence data better, the TN-93 model
is the most parameter-rich model that is common to most phylogenetic analysis packages. Parameter estimation was according to
the software, using the nt/aa frequencies of the data set. For nt
sequences the transition/transversion parameter was estimated to
1.48, and the pyrimidine/purine parameter to 1.42. The analyses
were performed under the assumptions of both rate homogeneity
and rate heterogeneity among sites, the latter with a G model with
five classes of variable sites. The rate heterogeneity parameter a was
0.30 for aa and 0.29 for nt sequences. The SH test (Shimodaira and
Hasegawa 1999), likelihood values, standard deviations, and minimum number of substitutions and their standard deviations were
used for comparison of alternative trees relative to the best ML
tree. A v2 test for compositional homogeneity as implemented in
the TREE-PUZZLE program was used to test for the stationarity
of the nt/aa composition. Distance tables for the distance analyses
were calculated by the TREE-PUZZLE program with the abovementioned parameters and analyzed by neighbor joining as
implemented in the PHYLIP program package.
Divergence times were estimated from distances by taking different evolutionary rates into consideration (Arnason et al. 2000).
Divergence times were also estimated on a ML tree based on aa
sequences using a penalized likelihood or a nonparametric rate
smoothing method as implemented in the r8s program (Sanderson
2002). The ML tree and branch lengths correspond to the tree in
shown in Fig 2.
The estimation of divergence times was also performed on first
and second codon positions by multidivtime as implemented in the
T3 program package (http://abacus.gene.ucl.ac.uk/). The dating
was done on nt data, because model parameters for mt aa sequence
data are not available in the current version. The parameters as
estimated by TREE-PUZZLE are A = 24.0%, C = 27.3%,
G = 17.3%, and T = 31.4%; the G distribution parameter
a = 0.29; and the relative rates (r) between five categories of variable sites are 0.0014, 0.0529, 0.3008, 1.0483, and 3.5966, respectively, each with equal probability (0.2). These parameters were
used to build the model file (modelinf).
Fig. 2. ML tree based on aa sequences showing references
(arrowheads) used for estimating crocodilian divergence times
(MYBP) using the programs r8s (upper value) and multidivtime
(lower value). Support values for branches (a–f) are shown in
Table 2.
The divergence times have been based on four well-established
vertebrate calibration points. For the origin of the Crocodylia a
divergence of 255–245 MYBP was applied. The minimum age of
245 MYBP represents the split between Crocodylotarsi and Ornithosuchia and the maximum age of 255 MYBP represents the
origin of Archosauromorpha (Benton 1990). Thus this divergence
time has a relatively narrow lower and upper bound. The age of
this calibration point is also consistent with other vertebrate
divergences (Janke and Arnason 1997).
The other lower and upper bound calibration points used were
the split of marsupials and eutherians (174–130 MYBP), the split
between mouse and cow (120–90 MYBP), and the split between
South American and Australian marsupials (70–60 MYBP). These
dates are consistent with previous estimates and the fossil record.
The youngest eutherian fossil (Eomaia) is about 125 myr old (Ji et
al. 2002), suggesting a lower bound of about 130 MYBP for the
split between marsupials and eutherians. An upper bound of 170
MYBP for this split is indicated by some molecular estimates (e.g.,
Kumar and Hedges 1998). The split between South American and
Australian marsupials is not expected to be older than 70 MYBP or
younger than 60 MYBP (Nilsson et al. 2004). The divergence time
between rodents and artiodactyls cannot be older than Eomaia, the
oldest eutherian (Ji et al. 2002), or younger than 84 MYBP, as
eutherians began to diversify around this time (Archibald et al.
2001).
Results
It has been shown previously (Quinn and Mindell
1996; Janke and Arnason 1997; Janke et al. 2001)
that the organization of crocodilian mt genomes
differs slightly from that characterizing most gnat-
623
Table 2. Support for crocodilian branches
Branch
MP
NJ
FM
LBP
QP
QPrh
BP
BPrh
a
b
c
d
e
f
100
100
100
100
100
100
100
100
100
100
100
100
100
100
99
100
100
100
100
100
100
100
100
100
100
100
100
100
100
100
100
100
100
100
100
100
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
1.0
Note. MP, maximum parsimony; NJ, neighbor joining; FM, Fitch–Margoliash with least squares; LBP, local bootstrap probability; QP,
quartet puzzling; rh, rate heterogeneity; BP, Bayesian probability. The values show the respective bootstrap support for the MP, NJ, FM,
and LBP methods, the quartet puzzle support for the QP and QPrh methods, and the probability for the BP and BPrh analysis for branches
a–f in Fig. 2.
hostomes. Consistent with the previous findings, the
new mt genomes show a rearranged gene order for
some of their tRNA genes. Thus the tRNA-Phe gene
is located in 5¢ of the control region, forming a cluster
with the tRNA-Pro and tRNA-Thr genes. Also, the
tRNA-Ser(AGY) and tRNA-His genes have a different position compared to that in other vertebrates,
forming the cluster tRNA-Ser(AGY), tRNA-His,
tRNA-Leu(CUN) instead of the more common
arrangement among vertebrates, tRNA-His, tRNASer(AGY), tRNA-Leu(CUN).
The mitochondrial control region contains large
regions that are surprisingly conserved among crocodiles compared to the control region of other vertebrates. This characteristic needs to be examined
further. Some crocodilian mt tRNA and proteincoding genes are separated by noncoding regions that
are larger than in any other vertebrate group studied
to date. This is particularly the case where tRNA
genes have moved to new positions. Thus, the noncoding regions between genes for the tRNA-Thr and
tRNA-Pro, and the tRNA-Pro and tRNA-Phe, are
11–20 nt long. As the rearrangement of tRNA genes
is common to all crocodiles, this event must have
taken place in the ancestor of all recent crocodiles,
conceivably some time in the Jurassic (208–146
MYBP) or earlier. The presence of large noncoding
sequences contradicts the idea that such sequences
should erode quickly in order to maintain the mt
genome as compact as possible.
The alignment of the crocodilian mt protein coding sequences was unproblematic, except for a small
sequence region at the 3¢ region of the cytochrome
oxidase subunit 1 (COI) gene of the Chinese alligator
(Wu et al., unpublished). Additional single nt at
positions 1187, 1195, and 1237 lead to shifts in the
reading frame of this gene, although these sites are
well conserved in all vertebrates. As the extra nt may
suggest simple sequencing artifacts, the affected 51-nt
region was removed from the aligned data set.
After excluding gaps and ambiguous sites around
gaps, 9489 nt sites remained for phylogenetic analysis. A v2 test as implemented in the TREE-PUZZLE
program package did not indicate a significant devi-
ation of the aa composition or of the nt composition
at first or second codon positions, except for the
opossum. Inspection of distance values indicated that
all crocodilian lineages evolve much faster than other
amniote groups. A v2 test showed that this increase in
the evolutionary rate is significant. Among the crocodiles the evolutionary rates are not significantly
different, except for the caiman.
Irrespective of evolutionary model or method, all
phylogenetic analyses of both aa and nt sequences
resulted in the same crocodilian relationships as
shown in Fig. 2. All crocodilian branches received
bootstrap support or probability values exceeding
95%. The support values for aa sequences are given in
Table 2. The mitogenomic analyses split Crocodilia
into three main lineages. The basal split is between
Alligatoridae (genera Alligator and Caiman) and a
branch that includes Crocodylidae (genus Crocodylus)
and Gavialis/Tomistoma. The sister-group relationship between Gavialis and Tomistoma is well supported, and alternative positions for either species are
significantly rejected by all analysis (Table 3). Similarly, the grouping of Crocodylus and Gavialis/Tomistoma receives significant support. A position of
Gavialis as the sister group to all other crocodilians as
in the traditional tree is 8–11 standard deviations
worse than the best tree and would require 245 ± 18
additional aa substitutions (Table 3).
Turtles show a strong affinity to the Archosauromorpha (birds and crocodiles) and are most likely
basal to this group. Any other position of turtles
except for a (bird (turtle, crocodile)) relationship can
be significantly rejected (not shown).
Figure 2 shows also the estimated divergence times
and their two standard deviations among the crocodilian lineages under study. The divergence times
have been estimated by two different approaches. The
divergence times based on ‘‘multidivtime’’ are somewhat older than those based on the penalized likelihood method of the ‘‘r8s’’ programs, however, the
dates are overlapping. Other dating methods based
on distance data (Arnason et al. 2000) and nonparametric rate smoothing (Sanderson 2002) yielded
values closer to that based on the penalized likelihood
624
Table 3. ML analysis of crocodilian relationships based on amino acid (aa) sequences
Topology
DlnL/SE
pBoot
pSH
DlnL/SErh8
pSHrh8
Steps/SD
allig,(croc,(Gav,Tom))
(Gav,Tom),(allig,croc)
Gav,(allig,(croc,Tom))
<)49,012>
)256/±31.3
)463/±43.2
1.00
0.00
0.00
1.00
0.00
0.00
<)46,455>
)176/±25.2
)295/±32.6
1.00
0.00
0.00
<8,753>
+144/±14
+245/±18
Note. allig—Alligatoridae (alligator, caiman); croc—Crocodylidae (Nile and estuarine crocodile); Gav—Gavialis gangeticus; Tom—Tomistoma schlegelii. DlnL: differences in log-likelihood (lnL) values and standard error (SE) relative to the best lnL values (shown in brackets).
pBoot: bootstrap probability. pSH: probability of a topology according to the SH test. rh8: assuming rate heterogeneity with eight classes of
variable sites. Steps: number of additional nt substitutions relative to the number of substitutions of the MP tree (shown in brackets).
method but the dates did not differ significantly from
those given in Fig. 2 (not shown). It may be argued
that the reference points may be slightly older or
younger. It should be kept in mind, however, that the
use of even 10% older or younger divergence time will
affect other datings only by approximately that proportion, i.e., less than the error based on the method
and sequence data.
The most basal divergence among recent crocodiles was estimated to have taken place in the Jurassic
at 150 MYBP. The splits within the family Alligatoridae are notably deep with the divergence between
the alligators and the caiman in the mid-Cretaceous
at 110 MYBP. The Chinese and American alligator
were estimated to have diverged during the late
Cretaceous at 76 MYBP, close to the K/T boundary. The split between Tomistoma/Gavialis and genus
Crocodylus was placed in the late Cretaceous at 80
MYBP. The split between the two Crocodylus species
was placed close to the Oligocene/Miocene border, at
23 MYBP, and that between Tomistoma and Gavialis in the Eocene at 42 MYBP.
Discussion
The current results have provided conclusive statistical support for earlier molecular findings that
identified Gavialis and Tomistoma as sister groups.
Likewise, the mitogenomic findings place Gavialis/
Tomistoma unequivocally as the sister group of genus
Crocodylus. Hence these relationships can no longer
be ignored or disregarded as being the result of
homoplasy, an insignificant number of data, poor
taxon sampling, or long branch attraction. The
analyses have further stressed the discrepancy between the molecular and the morphological understanding of the position of Gavialis in the crocodilian
tree. The disagreement between the morphological
and the molecular results can, however, in essence be
reduced to the placement of the root of the crocodilian tree. Morphological data have in general
placed it on Gavialis (Norell 1989; Brochu 1997; Poe
1996), while the mitogenomic analysis and other
molecular data (Densmore 1983; Gatesy et al. 1993,
2003; Hass et al. 1992; Harshman et al. 2003) place it
on the branch that separates the Alligatoridae.
Previously available molecular data have not been
comprehensive enough for allowing resolution and
molecular dating of crocodilian divergences. Consequently, estimates of the divergences among recent
crocodiles were largely based on the fossil record and
the assumption that the gharial had a basal position
among extant crocodiles.
There is solid fossil evidence that crocodiles originated in the late Permian/early Triassic, 250
MYBP. The oldest fossil leading to Crocodylia
(Crocodylotarsi), Stagonosuchus, has been dated to
240 MYBP, while the age of Protorosaurus, the
ancestor of birds and crocodiles (Archosauromorpha), has been dated to 255 MYBP (Benton 1990).
Thus the origin of the crocodilian lineage is quite
narrowly defined and can be used as a local reference
point for estimating crocodilian divergences. The use
of this crocodile-specific reference point is important,
because the mt genomes of all crocodilian lineages
evolve significantly faster than those of any other
vertebrate group. This makes it difficult to use reference points placed outside the crocodilians themselves, as assumptions must be made about
evolutionary rates along the branches leading to the
crocodiles. Nevertheless, additional reference points
that aid the divergence times estimates can be put on
the mammalian branches. These calibration points
are relatively deep in the vertebrate tree and they are
relatively narrowly defined.
Although this approach has provided dating of
crocodilian origin that is roughly consistent with the
fossil-based dates (Janke and Arnason 1997; Janke
et al. 2001), it can nevertheless be criticized as being
vulnerable to error. Some molecular datings based on
noncrocodilian reference points and ignoring their
particular evolutionary rates have placed the time of
crocodilian origin at 222 MYBP, thereby making
their origin appreciably younger than suggested by
the fossil record (Kumar and Hedges 1998). Another
factor that may have contributed to this low estimate
is the limited amount of data used.
The current mitogenomic estimates that are based
on four reference points, two different dating methods and two different data sets (aa and nt), yield
divergence times among recent crocodiles that are
about two times older than previously assumed from
625
molecular data (Densmore 1983, Hass et al. 1992).
Yet, the mitogenomic divergence times are not contradicted by the fossil record and are consistent with
the appearance of, e.g., Gavialis in the Oligocene.
Previous estimates of divergence dates may be biased
by the use of very limited molecular data or by directly taking the appearance of a crocodile lineage in
the fossil record as their molecular divergence time
(Brochu 2004). This approach may, however, severely
underestimate the time of genetic separation.
The molecularly based estimates of divergence
times indicate that at least five crocodilian lineages
(the caimans, the American alligator, the Chinese
alligator, the crocodiles, and the gharial/false gharial
clade) survived the K/T extinction 65 MYBP. In
addition to several lineages of mammals (Janke et al.
1994) and birds (Cooper and Penny 1997), several
lineages of crocodiles have survived the K/T extinction.
The current analyses and those by Gatesy et al.
(2003) have yielded statistically significant support to
the molecular view of crocodile relationships, originally proposed by Densmore (1983). In particular,
and in contradiction to the traditional morphological
interpretation, the molecular findings stress the nonbasal position of Gavialis and the sister-group relationship between Gavialis and Tomistoma. On the
assumption that the molecular findings are correct,
the molecular results suggest that the evolutionary
polarity of at least some morphological characters
have been incorrectly interpreted in the morphological studies.
The traditional taxonomy groups crocodiles into
three families, Alligatoridae, Crocodylidae, and
Gavialidae. The molecular findings suggest that this
system needs to be revised to recognize only two
families of recent crocodilians, Alligatoridae and
Crocodylidae, with the latter including Crocodylus,
Ostcolaemus, Gavialis, and Tomistoma.
Acknowledgments.
The study was supported by the Swedish
Science Council, the Erik Philip-Sörensen Foundation, and the
Nilsson-Ehle Foundation.
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