COMPUTER ANIMATION AND VIRTUAL WORLDS
Comp. Anim. Virtual Worlds 2014; 25:255–269
Published online 16 May 2014 in Wiley Online Library (wileyonlinelibrary.com). DOI: 10.1002/cav.1586
SPECIAL ISSUE PAPER
A haptic-enabled novel approach to cardiovascular
visualization
Shamima Yasmin1*, Nan Du2, James Chen3 and Yusheng Feng4
1
2
3
4
Computer Science and Engineering, Arizona State University, Tempe, AZ, USA
Electrical and Computer Engineering (ECE), University of Texas at San Antonio, San Antonio, TX, USA
Division of Cardiology, Department of Medicine, University of Colorado, Denver, CO, USA
Mechanical and Bioengineering, University of Texas at San Antonio, San Antonio, TX, USA
ABSTRACT
Intravascular ultra sound (IVUS) imaging technique is widely used for the detection of plaque deposit inside coronary
artery wall. Adequate detection of plaque deposit is necessary for further treatment of the patient, but image by image
analysis, nevertheless, is cumbersome. In this paper, we proposed a fully automatic novel method for coronary artery
visualization, which takes as an input a number of intravascular ultrasound images to construct the 3D model of coronary
artery wall where the plaque deposit is demarcated in a rapid 3D rendering environment. This 3D visualization of coronary
artery model has been enhanced in a haptic environment where the user is not only able to visualize the fatty plaque deposit
but is also able to feel and differentiate stiffness of plaque deposit as well as soft, elastic property of normal artery through a
virtual tour along the artery pathway. Copyright © 2014 John Wiley & Sons, Ltd.
KEYWORDS
visualization; IVUS images; coronary artery; 3D modeling; haptic
*Correspondence
Shamima Yasmin, Computer Science and Engineering, Arizona State University, Tempe, AZ, USA.
E-mail: shamima.yasmin@asu.edu
1. INTRODUCTION
Intravascular ultrasound (IVUS) is a catheter-based medical
imaging technique that provides high resolution, cross-sectional images of the interior of blood vessels in real time.
IVUS is most frequently used by cardiologists to diagnose
the interior details of coronary artery of a patient. Atherosclerosis is a disease characterized by a deposit of plaque
in coronary arterial wall which may become hardened over
time. Soft plaque may rupture and is considered to be the
most frequent cause of heart attack and sudden cardiac death.
Hence, IVUS is a valuable imaging tool in the diagnosis and
analysis of the development of plaque deposit inside the coronary
artery wall. It has been shown that atherosclerosis neglected
during angiography can be detected precisely with IVUS.
IVUS can generate thousands of cross-sectional images
that possess valuable information about the extent of
stenosis to facilitate subsequent treatment planning, e.g.,
stent deployment. However, it is very time consuming
and challenging for a physician to analyze on-line a great
number of 2D images. Although a subset of images can
be selected for analysis, it is still awkward to manually
quantify and outline the boundaries and compositions of
Copyright © 2014 John Wiley & Sons, Ltd.
plaque in each image; especially when the plaque morphology
is very irregular in nature. In the clinical application, physicians
will be the utmost users to use the software utility. They generally
wish a one-button approach so that the required results can be
calculated and shown. Hence, an automated technique is needed
to quickly and accurately process a large number of IVUS cross
sections within an acceptable time frame.
2. BACKGROUND
Segmentation of IVUS cross-sectional images of coronary
artery refers to the identification of the lumen/intima and
media/adventitia boundaries. On-line or real-time segmentation of IVUS images is quite challenging because their
differences in gray levels are not prominently shown in a
uniform fashion between consecutive images. A number of
semi-automatic/automatic methods have been developed to
perform segmentation of IVUS images. Some methods
consider the first image of the series to be manually outlined
and served as an active contour or a trained model to extract
the desired region-of-interests in the rest of the series of the
images [1,2]. Specifically, subsequent contours are gradually
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evolved at discrete intervals with regard to the active contour
until the optimum energy function is met so that corresponding boundaries can be captured. The active model based
approaches may fail when there exist substantial differences
among the images as it may necessitate the building of a
new active contour model.
Unal et al. [3] used prior knowledge of the expected
IVUS pattern by building an active shape model, which
is the average shape obtained from training data set. Mean
lumen shape and mean adventitial shape are constructed and
deviation of each image from the mean shape is observed by
principal component analysis. Hence, each shape is
defined by the mean shape with varying weighted factors
(i.e. distance to the catheter or radial shift, negative/positive
amplification of the curving, and angular shift) associated
with each of them.
Edge enhancement by anisotropic diffusion was incorporated
in a number of methods [4,5] from which approximate initial
edge is determined first. Afterwards the final contour evolved
from the approximate contour either by statistical discriminant
measure of weighted image separability or parametric/geometric
deformation in the form of energy minimization. Unfortunately,
such a method may not be able to create the initial contour
properly when noises in image are too high.
Papadogiorgaki et al. [6] generated intensity and
texture information by multilevel discrete wavelet frames
decomposition to initialize a contour. The process of contour initialization involves several iterations followed by
visual evaluation of filtered image at different iteration
levels. Low-pass filtering and radial basis functions are introduced for producing smooth contours. This involves
some preprocessing for noise removal, visual selection of
optimal contour, and may fail where a branching pattern
takes place.
Brusseau et al. [7] modeled the image brightness based on
Rayleigh distribution to facilitate separation of blood from
tissue. Optimal separation of luminal region is carried out
by comparing different statistical properties in term of the
likelihood function when it reaches the maximum. However,
the proposed technique was lack of the process of media
adventitia border detection and may not work properly if
catheter-center difference between images was not aligned.
Cardinal et al. [8] employed a fast marching method in
which the boundary of the region propagated according to
a speed function dependent on the magnitude of the local
image gradient. Upon approaching to the image boundary,
the speed value became low while the gradient magnitude
became high. As a result, the regions on the consecutive
IVUS images were semi-automatically identified by the fast
marching propagation method. Wennogle et al. [9] proposed
an improvement over this method by using a directional
gradient velocity term instead of gradient magnitude in the
speed function followed by a level-set technique as post
processing for smooth contour generation. Apart from
manual involvement in both of these methods, segmentation
in 3D environment may fail when catheter centers among the
images are not aligned. Too much compromising to align the
images may also result in loss of information.
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All the methods discussed above have some advantages versus shortcomings under different image contents. As the number of images is large, it would be
useful if a 3D model can be automatically generated
and well visualized from a series of 2D IVUS images
to examine the morphology and composition of plaque
in detail. Such a 3D environment not only can minimize
the time required for reviewing the images, but also
improve understanding of the details of coronary artery
plaque to facilitate faster and better treatment plan.
Apart from visualization in the 3D environment, if the
model can be haptically enabled, it can be greatly
enhanced as a tool where a hands-on training can be developed to emulate interactions with tissue properties of
vessel lumen, that is, normal, semi-normal, or fully
plaqued region, the extent of artery blockage, delivery
of stent, and so on.
In this paper, the technique of a fully automatic 3D
construction of a patient-specific coronary artery model
from a series of 2D IVUS images is proposed, from which
the coronary plaque deposit can be delineated properly in a
3D visual-haptic environment.
3. PROPOSED METHOD
The proposed visual-haptic process is divided into the
following three major steps:
• Image pre-processing,
• 3D reconstruction, and
• Haptic modeling.
Each step will be discussed in detail in the following
paragraphs.
3.1. Image Pre-processing
This step can be further divided into the following two
sub-steps: (1) extraction of media/ adventitia /vessel contour and (2) extraction of lumen contour.
3.1.1. Extraction of Media/Adventitia/Vessel
Contour
Two observations have been made for the extraction of
vessel contour. Firstly, the center of catheter may not
locate at the center of the vessel in IVUS images and
secondly, the average vessel diameter approximately varies
from 85 to 90 pixels (Figure 1).
As the image is initially thresholded, a faint circular
region of low pixel value (approximate pixel intensity less
than 70) surrounded by high pixel value (approximate
pixel intensity greater than 140) in the middle is detected
(Figure 2). The circular region represents the vessel boundary that needs to be segmented out. It is observed that in
Comp. Anim. Virtual Worlds 2014; 25:255–269 © 2014 John Wiley & Sons, Ltd.
DOI: 10.1002/cav
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Figure 1. Intravascular ultrasound coronary artery images with catheter center (left) aligned and (right) not aligned with the
vessel boundary.
Figure 2. Initial thresholding of the intravascular ultrasound image to get a better understanding of further segmentation.
images where the center of the vessel is aligned with catheter
center, this circular region roughly coincides with the vessel
boundary, but there are cases where catheter center is far off
from the vessel center. In that case, vessel center needs to be
determined first in order to extract the vessel boundary.
A circle with an approximate artery radius is considered
with initial center positioned at catheter center, that is, the
center of the image. The circle center is gradually shifted at
discrete intervals within a small region around the catheter
center. As the center is gradually shifted, the point at which
the center of the circle coincides with the center of the
vessel is called the optimum position (Figure 3).
At optimum position, the following two properties of
image contents can be concluded as:
Firstly, the difference in peripheral pixel intensity for a
small increase and for a small decrease in radius
becomes the maximum (Figure 4).
Secondly, there is a uniform increase in pixel intensity along
the periphery for a small increase in radius (Figure 5).
Let Arij be the sum of pixel intensities within a circle with
radius r and center (i, j). Similarly, Aijr Δr is the sum of pixel
intensities for a circle centered at (i, j) with radius ‘r ∆r’.
LetRij Δr ¼ Arij Aijr Δr be the difference in peripheral pixel intensity for a small decrease in radius. Similarly, the difference
in peripheral pixel intensity for a small increase in radius ‘∆r’
is defined as RþΔr
¼ AijrþΔr Arij. Thus, the optimum radius r*
ij
at optimum center (i, j)* is given by the following
argmax
RþΔr
ij
r∈½rbegin ;r end ;ij∈½ijmin ;ijmax
Rij Δr
where rbegin , rend approximate range of vessel radius and ‘∆r’
represents discrete step interval of 2 pixels. Similarly, center
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Figure 3. Alignment of the catheter center with the vessel center.
Figure 4. Measurement of peripheral pixel intensity difference at optimum position.
(i, j) varies from 15 to +15 along x and y directions with initial
center at catheter center, that is, origin (0, 0).
After achieving the optimum center for an optimum
radius, the initially thresholded higher pixel region is
shaved off. The convex hull of the interior lower pixel
region yields the vessel boundary (Figure 6).
3.1.2. Extraction of Lumen Contour
After the vessel boundary is extracted, the optimum
center and radius for each vessel boundary are used to
extract the new region of interest (ROI), as shown in
Figure 7(b). Hence, for the extraction of lumen contour, further processing is carried out only on the region of interest and the outer part of the image is
removed.
In order to extract the contour of the lumen region,
a series of operations, that is, smoothing, thresholding
are applied followed by morphological operations
which will be discussed in brief next. Smoothing operation on the extracted ROI is performed first (Figure 8
and Figure 9). For each pixel p(i, j) in an image matrix
p, the average of its eight immediate neighbors is calculated as follows:
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1
8
average¼ ½pði
1; j
1Þ þ pði; j
1Þ þ … þ pði þ 1; j þ 1Þ
The intensity of each pixel is updated by the difference between its value and the average of its eight immediate neighbors. The smoothing process for each
pixel p(i, j) is carried out as follows:
pði; jÞ ¼ spði; jÞ þ ð1
sÞaverage
where if
s < 1, the image is blurred
s = 1, the image is unchanged
s > 1, the contrast is heightened
Once a smoothed image is obtained (Figure 10(a)),
a global threshold is selected in an iterative manner
by using ‘Isodata’ algorithm [10]. The essence of
this method is to begin by dividing the histogram
of the ROI into two parts using a starting threshold
value, that is, the sample mean of the ROI. Two
sample means of the gray values associated with
Comp. Anim. Virtual Worlds 2014; 25:255–269 © 2014 John Wiley & Sons, Ltd.
DOI: 10.1002/cav
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Figure 5. A uniform increase in pixel intensity defined by blue color region along the periphery of the artery boundary for a small
increase in radius, that is, ‘Δr’.
Figure 6. Gradual extraction of artery boundary.
the foreground pixels and with the background pixels
are computed. A new threshold value is then
computed as the average of these two sample means.
Based upon the new threshold, the process is
repeated until the threshold value becomes unchanged.
The selected threshold value is then used to convert
the grayscale image into a binary image as shown in
Figure 10(b).
Based on the binary image, a series of morphological operations are applied to extract the lumen region. Firstly, an
erosion operation is performed followed by a dilation operation, to roughly extract the lumen region (Figure 11(a)). An
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Figure 7. (a) Original raw image, (b) The extracted region of interest (ROI).
opening operation is then used to select and preserve the intensity patterns while attenuating others (Figure 11(b)). In order to refine and smooth the boundary of the lumen region, a
median filter and a dilation operation are used. The result is
shown in Figure 11(c).
In order to remove the catheter-induced artifacts, the
convex hull of the extracted lumen region is computed,
and the difference between the convex hull and the
extracted lumen region is calculated to identify and fill
the gap induced by the catheter (Figure 12). Next, the
connected components are labeled and the lumen boundary
is extracted (Figure 13).
3.2. 3D Reconstruction
Figure 8. Each pixel p(i, j) and its eight neighbors are considered
while carrying out the smoothing operation.
After the image processing steps as described in the previous
section, a series of vessel and lumen boundaries are extracted
(Figure 14). IVUS needs to be associated with angiography
so that image alignment follows the proper course of artery
pathway. Due to lack of alignment information associated
with each IVUS cross section, all the extracted boundaries
Figure 9. Smoothing operation is carried out on region of interest at different ‘s’ values.
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Figure 10. (a) The resultant image after applying the smoothing process. (b) The binary image after thresholding the smoothed image in (a).
Figure 11. Gradual extraction of lumen region.
Figure 12. The process of identifying gap induced by the catheter.
are simply stacked up along the corresponding center of the
image plane as shown in Figure 14(b). Afterwards a surface
reconstruction process for both inner lumen and outer vessel
boundaries is performed.
For surface reconstruction, we need to model the inner
(lumen) and the outer (vessel) layers separately from the
extracted lumen and vessel boundaries, respectively.
Two consecutive boundaries, that are lumen boundaries
or vessel boundaries, may not have equal number of
points. For smooth transition between two consecutive
boundaries, four control points are located along four
quadrants of each boundary (Figure 15).
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Figure 13. (a) The original region of interest and (b) the segmented lumen.
Each quadrant consists of equal number of points. After
equalizing the boundary points between two consecutive
boundaries, triangulation is performed (Figure 16). For
smooth transition between two consecutive boundaries,
two consecutive boundaries are interpolated and a number
of intermediate boundaries are constructed in-between the
source and target boundaries shown as ‘Boundary 1’ and
‘Boundary 2’, respectively, in Figure 17.
Extracted lumen boundaries can be very irregular in
shape and may not be fully continuous within the vessel
boundary as shown in Figure 18. In the case of partial plaque
formation, some portion of lumen boundary resides within
the vessel, whereas the rest consists of soft vessel tissue.
For ease of surface reconstruction, extracted vessel
boundary is given a small thickness and the outer vessel
boundary is formed. Next, discontinuous portions of lumen
boundary are connected and extended to be in-between the
inner and the outer vessel boundaries (Figure 19). The
extended lumen boundary remains hidden in-between
the inner and the outer vessel boundaries. This way, nonplaque portions of soft tissue and irregular plaque portion
inside the vessel boundary can be properly outlined and
separated in the surface reconstruction process.
Figure 14. (a) Vessel (red) and lumen (yellow) contours overlaid on an image and (b) all vessel and lumen contours are stacked up.
Figure 15. Equalization of boundary points.
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Figure 16. Triangulation is performed after equalizing the boundary points between two consecutive boundaries.
Figure 17. Formation of intermediate interpolated boundaries from source (Boundary 1) and target (Boundary 2) boundaries
performed in-between two consecutive lumen boundaries
when irregular, discontinuous plaque is formed inside
the vessel wall.
3.3. Haptic Modeling
Figure 18. Discontinuous lumen boundary (yellow) and continuous vessel boundary (red).
While surface reconstruction, extended lumen boundary along with the original extracted portion is considered
as a whole and divided into four quadrants (Figure 20) as
explained before. Thus, surface reconstruction is
After 3D reconstruction of the model, haptic properties
are assigned to the constructed vessel and lumen
surface. Vessel surface consists of inner and outer
boundaries. Depending on the plaque formation, lumen
surface may totally be confined within the interior
vessel boundary or some part of lumen surface may
be hidden in-between the inner and the outer vessel
boundaries as can happen when plaque deposit becomes
irregular, discontinuous. In both cases, one haptic lumen
surface is formed. For irregular plaque configuration, only
intercepted portion of the lumen surface is perceived
haptically. A normal artery without any plaque deposit
feels elastic and soft. The region of plaque in the artery
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4. RESULTS
Figure 19. Discontinuous lumen boundary is extended to be continuous.
Figure 20. Vessel contour (red) and extended lumen contour (yellow).
will feel rough and stiff. Thus, irregular plaque deposit
intermingled with soft vessel tissue can be differentiated
haptically (Figure 21).
A series of thirty IVUS images have been tested. Figure 22
shows the result of the extracted vessel boundaries for 30
IVUS images.
Figure 23 shows the extracted lumen boundaries of the
corresponding images. While extracting lumen boundary,
only a portion of the image demarcated with a square of
side ‘r’ centered at the vessel center has been considered. The
proposed algorithm shows promising result as commented by
cornonary imaging expert. Deviation from the actual vessel
boundary is almost negligible. Further work is being carried
out to make the lumen boundaries work perfect and error-free
for irregular or partial-plaqued IVUS images.
Figure 24 (a) shows the normal artery model (without
plaque formation) constructed from the extracted vessel
boundaries. A small thickness has been assigned to the artery
wall. Another interior tube is constructed from the lumen
boundaries as shown in Figure 24 (b). In the figure, plaque
deposit has been marked yellowish. Figure 24(b) shows the
combined constructed model where the inner lumen tube
has been placed inside the artery model. The transverse
cross-section to the right of Figure 24(b) shows that the
artery is heavily plaqued.
Figure 25 shows the haptically constructed 3D coronary
artery model where a catheter is inserted to simulate the
navigation through the artery tunnel. A user can make a
virtual tour through the artery tunnel to have better and
closer interaction in an immersive haptic environment.
While probing through the artery tunnel, the haptic catheter
can distinguish and differentiate normal, soft artery tissue
from plaque. Normal artery tissue feels soft and elastic.
With the haptically constructed 3D model, the user can feel
the extent of plaque deposit. The user can also examine the
physical properties of plaque deposit. HLAPI interface has
been used to represent two polygonal models: lumen tube
and vessel tube. In order to avoid buzzing noise while
Figure 21. Formation of irregular and stiff plaque deposit inside soft vessel wall.
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Figure 22. Extracted vessel boundaries for all 30 images.
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Figure 23. Extracted lumen boundaries for all thirty images.
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Figure 26. Fanning in coronary artery while branching out.
Figure 24. A 3D coronary normal artery model (a) without
plaque deposit and (b) with plaque deposit and transverse Xsection.
haptic interaction, a coarse polygon defined by its oriented
bounding box has been rendered haptically, whereas for visualization, polygons have been displayed with minute details.
The anatomy of coronary arterial model looks like a tree
structures, that is, a main trunk (e.g., left descending artery
or left circumflex artery) with a few secondary branches
(e.g., diagonal artery, septal artery, or obtuse marginal
artery, etc.). When the tip of IVUS catheter is near the
bifurcation or junction of the main and side-branch region,
the fan beam signal comes across from the target vessel to
the side-branch as shown in Figure 26. Fanning may cause
a sudden change in the vessel diameter. The proposed algorithm can consider the branching of artery successfully.
The approximate vessel diameter while working on the
extraction of vessel boundary is given a wider range to
meet this issue so that the cross-sectional change in vessel
can be correctly determined.
Figure 27 shows how fanning can be handled automatically with the proposed algorithm. In the figure, four
consecutive images have been considered where an artery with
a small diameter gradually merges with a larger-diameter artery. The sudden change in vessel boundary in the fourth image has been correctly outlined with the proposed algorithm.
The algorithm has also been tested with stent-implanted
IVUS dataset. As the vessel boundary looks very irregular
with the stent-induced artifacts, the extraction of vessel
boundary seems more challenging. The proposed algorithm is found to be able to correctly extract the vessel
boundary from stent-implanted IVUS images (Figure 28).
5. CONCLUSIONS AND FUTURE
WORK
In this paper, the technique of an automatic 3D visualization
of coronary artery model based on IVUS images has been
proposed. The processing time is acceptable as the algorithm takes only a few iterations. As the plaque deposit increases over time, artery loses its elasticity and plaque
rupture may take place. Different stages of plaque formation
models can be created and examined in a 3D haptically
immersive environment based on corresponding IVUS
datasets, that not only makes the diagnosis faster but also
the treatment plan easier.
Figure 25. A haptic catheter is probing the coronary artery; (a) normal view and (b) tunnel view.
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Figure 27. Branching results in change in vessel diameter as well as the extracted vessel boundary.
Figure 28. Extraction of vessel boundaries from stent-implanted intravascular ultrasound images.
Further work on testing different IVUS datasets with
the proposed algorithm will be carried out. The proposed
3D software utility can be used by cardiologists for examining coronary IVUS images in a user-friendly 3D environment and be employed as a training tool for medical
students/practitioners as well.
5.
ACKNOWLEDGEMENT
6.
This work is supported by the National Science Foundation grant NSF/HRD-CREST#0932339.
7.
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AUTHOR’S BIOGRAPHIES
Shamima Yasmin received her
bachelor’s degree in Civil Engineering (Structural) from Bangladesh
University of Engineering and Technology. Later, she received her Master’s in Computer Science from the
University of New South Wales,
Australia, in 2004. She obtained her
PhD degree in Computer Graphics
from Universiti Sains Malaysia in
2010. Her research interests include 3D modeling, visualization, virtual reality, and parallel computing. Currently,
she is working as a postdoc researcher at Arizona State
University.
Nan Du received her bachelor’s degree in Information Engineering
from Beijing University of Post and
Telecommunications in 2008. She is
currently a doctoral student at Digital
Image Processing Laboratory at the
Department of Electrical and Computer Engineering (ECE), University
of Texas at San Antonio (UTSA).
She is also a research assistant at
the Department of ECE, UTSA. She is the author of two
papers and her main interests are in image processing and
medical imaging.
S. James Chen received his BS degree from the Department of Computer Science and Information
Engineering from the National
Chiao-Tung University, Taiwan, in
1982 and his MS and PhD degrees
from the Department of Computer
Science from Northwestern University, Evanston, Illinois, in 1986 and
1991, respectively. In 1996, Chen joined the Division of
Cardiology, Department of Medicine, University of Colorado Denver (Health Sciences Center), as an Assistant
Professor. He is now an Associate Professor of Medicine
and directing the 3-D Coronary Imaging Laboratory. He
has collaborated with Dr John D. Carroll for more than
18 years to develop various computer-assisted utilities to
facilitate diagnostic and therapeutic procedures in the cardiac catheterization laboratories. Such a research project
has received the ‘Melvin Judkins Young Clinical Investigators International Award’ in Cardiovascular Radiology
in the Conference of American Heart Association 1997.
Currently, several important research projects are under
development including (a) on-line 4D imaging to assist
cardiac intervention for structural heart diseases, (b)
multi-modality fusion (computed tomography, X-ray,
and ultrasound) and advanced quantitative estimates,
and (c) kinetic and deformation analyses on vascular
structures and implantation devices.
Yusheng Feng is a Professor of Mechanical and Biomedical Engineering at the University of Texas (UT) San
Antonio and the Director and coFounder of NSF-Sponsored Center
for Simulation Visualization and
Real-Time Prediction. His research
areas are in computational bioengineering, mathematical modeling,
computer simulation, and hapticsenabled visualization for surgical
simulation and training. Feng received his PhD in computational mechanics from the UT at Austin. He
has two Master’s degrees in mechanical engineering and
applied mathematics.
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