J.Agric.Chem.and Biotechn., Mansoura Univ.Vol. 5 (5): 165-176, 2014
BIOREMEDIATION OF CHEMICAL POLLUTANTS- CONTAMINATED
WATER
A-BIODECOLORIZATION
OF CRYSTAL
VIOLET
CONTAMINATED WATER BY Pseudomonas geniculata
Hauka, F. I.1; El. B. A. Belal2; M.A. A. Selim1 and A. I. Gad1
1- Agric. Micobiol. Dept., Fac. Of Agric. Mansoura Univ., Egypt.
2- Agric. Botany Dept., (Agric. Microbiol. branch), Fac. of Agric.,
Kafrelsheikh Univ., 33516, Kafr El-Sheikh, Egypt.
ABSTRACT
Biodcolorization of crystal violet (C V) was investigated in aquatic system. C
V decolorizing bacterium (designated isolate AT 17) was isolated from effluent sample
using enrichment technique by clear zone formation. Based on morphological,
physiological and 16S rDNA, this bacterium was identified as Pseudomonas
geniculata. It was capable of using C V as a sole source of carbon. Nutrient agar
medium inhibited C V decolorization but mineral salt medium (MSM) increased C V
decolorization. C V decolorizing by P. geniculata was found to be optimum at pH 7
and 35°C. Additional carbon sources (i.e., glucose) and nitrogen sources (i.e.,
peptone, yeast extract and beef extract) inhibited completely C V decolorization. On
the ather hand, ammonium chloride and ammonium sulphate increased the C V
decolorization. Ammonium chloride was the best inorganic nitrogen source in C V
decolorization. Incubation period for 7 days was the optimum for C V decolorization.
P. geniculata was able to decolorize 99% of C V completely in liquid medium at pH 7
and 35 °C after 7 days comparing with uninoculated medium(control). There was no
toxicity of detected C V after 7 days of incubation with P. geniculata on Bacillus
subtilis as microbial bioassay test. The dissipation of C V was coinciding with
increasing P. geniculata biomass in C V contaminated water. This study has shown
that P.geniculata C V could be applied to remediate Chemical pollutants contaminated water.
Keywords: Crystal violet, decolorization, Microorganisms.
INTRODUCTION
Crystal violet falls in the class of triphenylmethane dyes which are
commonly used in the clothing industry to dye wool, silk and cotton (Kim et
al., 2005). It is well known as a biological stain, yet also possesses medicinal
properties. It has been used in the treatment of pinworms and as a topical
agent as well as being added to feed to prevent fungal growth (Azmi et al.,
1998). The toxicity of effluent is because of the presence of dye or its
degraded products which are mutagenic or carcinogenic. Therefore, the
treatment of industrial effluents contaminated with dye becomes necessary
prior to their final discharge to the environment. Various kinds of physicochemical methods are in use for the treatment of wastewater contaminated
with dye. These methods are not environment friendly and cost-effective and
hence become commercially unattractive (Nigam et al., 1996 and Azmi et al.,
1998).
Hauka, F. I. et al.
Therefore, the purpose of this study was to isolate and characterize of
the Crystal violet decolorizing microbial strain and its use in bioremediation of
Crystal violet - contaminated water.
MATERIALS AND METHODS
Chemicals:
C V was donated by Agric. Microbiol. branch, Agric. Botany Dep., Fac.
of Agric., Kafrelsheikh Univ., Egypt.
Microbial decolorization of the crystal violet:
Sampling and analysis of the effluent
The effluent samples (the sludge and the wastewater ) were collected
from the Station Exchange Aldoakhlah and Nasr Company for Textile orchard
each of these areas Almehalla Alkobra. The samples were transported to the
laboratory at 4°C. Minimal Medium as mineral salt medium (MSM) and
Nutrient agar medium were used through this study as described by (Brunner
et al., 1980).
Isolation, screening and identification of dye decolorizing
microorganisms from effluent.
Crystal violet decolorizing bacterium was isolated from effluent sample
using enrichment technique use 100 ml sterilized mineral salt liquid medium
(MSL) in 500 ml glass bottle containing 50 mg /L from C V as a sole source of
carbon. Dilution series were prepared after the final time from enrichment
-6
culture in a glass test tube containing 9 ml MSL liquid medium up to 1:10
and then 100 μl of the third enrichment culture was transferred onto MSA
plates containing crystal violet (50 mg/L) and spread evenly with sterilized
glass beads and were incubated at 28◦C for 7days monitored for appearance
of colonies by clear zone formation. (Belal, and El-Nady, 2013 and Shah et
al., 2013)
Screening for Crystal violet decolorizing isolates by applying the clear
zone test method.
Mineral salt agar medium (MSA) plates containing C V (50 mg /L) were
inoculated with a loop full of bacterial culture from cultures of the strains. The
increase in clear zone diameters developing on the MSA plates was followed
up periodical (3 day and 7 day) and measured by slide gauge. Experiments
were made in tri-plicates. At least three replicates experiments were
performed with the unspotted plate as a control.
Identification:
The efficient selected Crystal violet (C V) degrading bacterial isolate
was identified depending upon morphological and physiological
,
characteristics as described by John (1984) and Bergy s manual of
systematic bacteriology. (1984) as well as 16S rDNA (Boye et al., 1999). This
technique was performed by sigma, Cairo, Egypt and GATC Company.
Effect of different culture conditions on decolorization of Crystal violet
(C V) by P. geniculata strain AT 17
1-Media
MSA and NA were containing C V (50 mg /L) were inoculated a loop
full of cultures from the strain and incubated at 28°C for 7days.
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J.Agric.Chem.and Biotechn., Mansoura Univ.Vol. 5 (5): MAy, 2014
2-pH
The pH of the inoculated MSA was adjusted to (4, 5, 7, 8 and 9). The
effect of pH on dye decolorization was checked after 7 days.
3-Temperature
The inoculated MSA was incubated at various temperatures (20, 30, 35 and
40°C). The effect of temperature on dye decolorization was checked after 7
days.
4-Nitrogen sources
To study the effect of nitrogen sources on decolorization of C V, MSA
with concentrations of nitrogen such as (NH4)2SO4, (NH4Cl) (0.5, 1, 1.5 and
2%) and peptone(5g/L), Beef extract(3 g/L) as well as yeast extract(1g/L) at
pH 7 and 35ºC.
5-Incubation Time
To determine the effect of incubation period, at the optimum culture
conditions (pH 7 and 35 ºC) for different incubation period (3, 5, 7, 9 and 11
days).
Decolorization of Crystal violet (C V) in MSL by P. geniculata strain AT
17
7
The bacterial cell suspension (10 cfu/ml) was then used to inoculate
100 ml MSL containing (50 mg/L) of the dye. The cultures were incubated at
35 °C, pH 7 and 150 rpm for 7 days. The test principle is based on the
decrease of the optical density of the dye during the dyes decolorization. The
percentage of decolorization of the dye was determined photometrically using
UV–vis pectrophotometer at OD590nm for C V. Control flasks of equal volume
of MSL and dye without any microbial inoculation were incubated in parallel
at all intervals to assess abiotic loss. During the experiment, samples were
collected (1 ml) periodically at 0, 1, 3, 5 and 7 day for estimation of viable cell
count (cfu/ml) by using dilution series onto MSA containing of the dye and to
determine the decolorization using UV–vis pectrophotometer. All the
experiments were done in triplicates. The percentage of decolorization was
calculated as by (Yatome et al., 1993).
Toxicity test Crystal violet (C V) decolorizing products
The bioassay of the remaining C V toxicity was performed on the
aqueous solutions after 7 days of incubation with P. geniculata strain AT 17.
Bacillus subtilis, as gram positive bacterium was used as the test organism.
The toxicity was determined by recording of inhibition zone in growth of B.
subtilis comparing to control treatment (untreated). Plates were incubated at
35 °C for 7 days.
Statistical analysis
Data were calculated as mean ± standard deviation (SD) and analyzed
using analysis of variance (ANOVA). Probability of 0.05 or less was
considered significant. The statistical package Program was used for all
chemometric calculations (Parshetti et al., 2011).
167
Hauka, F. I. et al.
RESULTS AND DISCUSSION
The most widely used screening method for Crystal violet (C V)
decolorizing organisms is the so called “clear zone” method. The extracellular
hydrolyzing enzymes secreted by the target organism decolorize the
suspended dye in the agar medium into water soluble products thereby
producing zones of clearance around the colony. The main advantage of this
test is that it is generally fast, cheap and simple, and allows the simultaneous
performance of a great number of parallel tests (Belal, 2003).
Isolation and screening of dye decolorizing microorganisms
From the microbial sources (textile effluent) a total of 19
morphologically different C V decolorizing isolates were obtained.
Among 19 bacterial isolates, One bacterial isolate designated as AT 17
achieved higher C V decolorization (wider clear zone) comparing with the
other isolates (Fig.1).
The results were compared with those obtained with noninoculated
medium (controls).
Fig. 1: Clear zone formation on MSA containing Crystal violet (C V) by
The isolated bacterium.
Identification of the efficient of Crystal violet (C V) decolorizing isolate.
This bacterial isolate (AT 17) was identified according to morphological,
physiological as well as using analysis of 16S rDNA (Boye et al., 1999). This
efficient C V decolorizing isolate (AT 17) was gram-negative, motile, short
rods and oxidase positive. According to the 16S rDNA analysis, the
phylogenetic tree of the C V decolorize bacterium isolate AT 17 and related
bacterial species based on the 16S rDNA sequence is provided in Fig (2). It
can be clearly seen that the Pseudomonas sp AT 17. as C V decolorize
bacterium was included in the genus Pseudomonas and closely related to the
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J.Agric.Chem.and Biotechn., Mansoura Univ.Vol. 5 (5): MAy, 2014
species geniculata. It showed the highest sequence similarities with
Pseudomonas geniculata strain ATCC 19374 (100 %) Figure (2).
Fig. (2): Phylogenetic dendrogram obtained by distance matrix analysis
of 16S rDNA sequences, showing the position of strain
Pseudomonas geniculata AT 17 among phylogenetic neighbors.
The scale bar indicates 0.02 substitutions per nucleotide
position.
Effect of different Media on decolorization of Crystal violet (C V) by P.
geniculata AT 17
MSA and Nutrient agar containing C V (50 mg/L) media were used to
know the effect of the media on C V decolorization by clear zone formation.
P. geniculata strain AT 17 formed only clear zone on MSA but it was
observed that no clear zone was formed on nutrient agar medium containing
C V and this may be due to presence of nutrient components in nutrient agar
medium suppressed C V decolorization enzymes which could be decolorize
C V.
The results were compared with those obtained with noninoculated
medium (control) incubated in the respective media. The noninoculated
control showed no clear zone. MSA was selected for the further experiments.
169
Hauka, F. I. et al.
Effect of different pH on decolorization of Crystal violet (C V) by P.
geniculata AT 17
The influence of pH on decolorization of C V in MSA with P. geniculata
strain AT 17 by using clear zone formation is shown in Table (1). The highest
C V decolorization with strain was achieved at pH 7 with wider clear zone
formation followed by PH 8 C V was not decolorized by strain at pH4 and 5
(acidic pH) as well as at pH9 (alkali pH). This results are in agreement with
Adedayo et al. (2004) who showed that Klebsiella pneumonia RS-13, which
completely degraded Methyl Red in the pH range of 6–8.
Table (1). Effect of different pH on decolorization of Crystal violet (C V)
by P. geniculata strain AT 17
pH
Strain
Pseudomonas geniculata AT 17 + C V
Control (un-inoculated)
Diameter of decolorization zone (clear)
zone (mm) at different pH
4
5
7
8
9
0
0
37±0.05
25.5±0.05
0
0
0
0
0
0
Effect of different Temperature on decolorization of Crystal violet (C V)
by P. geniculata strain AT 17
The effect of different temperatures on decolorization of C V is shown
in Table (2). while the highest decolorization was achieved at 35 °C, (wider
clear zone). The dye decolorization activity of the strain was found to
decrease with increasing incubation temperature over 35°C. and least
decolorization at 30, respectively. This can be explained that temperature can
influence enzyme conformations which in turn effects catalytic activity (Staub
and Denes, 1969).
Table (2): Effect of different Temperature on decolorization of Crystal
violet (C V) by P. geniculata strain AT 17.
Temperature
Strain
P. geniculata AT 17 + C V
Control (un-inoculated)
Diameter of decolorization zone (clear) zone (mm)
at different temperature (°C)
20
30
35
40
0
32±0.5
43±0.5
22.5±0.05
0
0
0
0
Effect of mineral nitrogen sources and components of nutrient broth
medium on decolorization of Crystal violet (C V) by P. geniculata strain
AT 17.
The effect of additional Nitrogen sources (such as 1% ammonium
sulphate and ammonium chloride) and components of nutrient medium
(organic nitrogen) (peptone 5gm/L, beef extract 3gm/L and yeast extract
1gm/L) is shown in Table (3). Mineral nitrogen sources (such as 1%
ammonium sulphate and ammonium chloride) were the best in C V
decolorization (clear zone formation) by P. geniculata strain AT 17.
Decolorization was achieved with ammonium chloride more than ammonium
sulphate. Components of nutrient broth medium suppressed the
decolorization of C V by P. geniculata strain AT 17.
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J.Agric.Chem.and Biotechn., Mansoura Univ.Vol. 5 (5): MAy, 2014
Table (3). Effect of nitrogen sources on decolorization of Crystal violet
(C V) by P. geniculata strain AT 17.
Treatments
Diameter of decolorization zone (clear zone) (mm) on different
nitrogen sources
Strain
P.geniculata AT 17 +C V
Ctrol
MSA + Pepton
(5gm/L)
0
0
MSA + Beef
extract (3g/L)
0
0
MSA + Yeast
MSA +
MSA +
extract (1g/L) NH4Cl (1%) (NH4)2SO4 (1%)
0
32±0.1
11±0.1
0
0
0
Effect of different concentrations from ammonium sulphate and
ammonium chloride on decolorization of Crystal violet (C V) by P.
geniculata strain AT 17
Crystal violet (C V) decolorization by P. geniculata strain AT 17 when
grown on different concentrations (0.5, 1, 1.5 and 2%) of the best N source
(ammonium sulphate and ammonium chloride) in presence of the best carbon
source (C V) are presented in Tables (4). It was revealed that ammonium
chloride at 1.5% was the optimum level for P. geniculata AT 17. Parshetti et
al. (2011) who showed that Crystal Violet decolorization of 100% was
observed with 0.1% NH4Cl within 5 hr.
Nigam et al. (1996) reported on how the highest decolorization was
addition of inorganic nitrogen source (ammonium chloride or ammonium
sulphate) but it decreased or inhibited completely addition organic nitrogen
source (peptone or yeast extract). With fungal studies concerning dye
degradation, additional nitrogen sources can either have a positive or
adverse effect on decolorization. They proposed that nitrogen suppressed the
enzymatic system and found that a nitrogen limiting environment stimulates
enzyme production. Although it's clear that additional nitrogen reduces or
inhibits decolorization.
Table (4): Effect of different concentration from ammonium chloride
and ammonium sulphate on decolorization of Crystal violet
by P. geniculata AT 17.
Treatment
Diameter of decolorization (clear) zone (mm) at
different NH4Cl or (NH4)2SO4 concentrations (%)
0.5
0.1
1.5
2.0
Strain
P.geniculata strain AT 17 + C V
P.geniculata strain AT 17 + C V
Control (un-inoculated)
NH4Cl
11±0.2
(NH4)2SO4
11±0.17
0
32±0.17
57±0.2
20.5±0.15
11±0.17
0
11±0.1
0
12.5±0.05
0
Effect of different incubation period on decolorization of Crystal violet
(C V) by P. geniculata strain AT 17
171
Hauka, F. I. et al.
Results in Tables(5) show that the effect of incubation time on C V
decolorization under optimum conditions (pH7, 35°C and NH 4Cl 1.5%). The
C V decolorization (clear zone formation) increase with time dependent
manner and highest C V decolorization was obtained after 7 days for growth
of P. geniculata strain AT 17. The C V decolorization was similar at 7, 9 and
11 days after incubation time, respectively. Incubation period on
decolorization of Crystal violet by Pseudomonas putida is 7 days (Chen et
al., 2007).
Table (5): Effect of different incubation period on decolorization of C V
by P. geniculata AT 17.
Treatments
Strain
P. geniculata + C V
Control (un-inoculated)
Diamatar of decolorization (clear) zone (mm)
Incubation period (day)
3
5
7
9
11
50±0.3
52.5±0.08 63±0.17
63±0.5
63±0.5
0
0
0
0
0
Effect of decolorization of Crystal violet (C V) in MSL by P. geniculata
strain AT 17 in aquatic system.
Additionally to the qualitative clear-zone tests, the degradation
potential of P. geniculata strain AT 17 was characterized via percentage of
decolorization determination of dyes in MSL. The decolorization potential
obtained for C V which obtained it with P. geniculata strain AT 17 at 35°C
pH7 after 7 days. The results in Table (6) summarize the differences of
decolorization for C V by P. geniculata strain AT 17 in aquatic system. In the
present study, dyes decolorization was increased with increasing the
incubation period in the medium amended with P. geniculata strain AT 17 in
all cases. The application of C V decolorizing strain increased the number of
cultivable C V - decolorizing cells in the the aquatic system during the 7 days
of incubation (Table 6). The experimental results were compared with the
noninoculated (control), which showed less decolorization of the dye due to a
biotic stress.
Table (6). Decolorization of C V by P. geniculata strain AT 17 in aquatic
system
Treatments
Strain
Control (un-inoculated) (C V)
P. geniculata AT 17+ C V
%Remaining
%Remaining
CFU/ml
0 day
100±0
100±0
7
105*10
% Remaining of dyes and CFU/ml
CV
1 Day
3 day
5 day
100±0.0
98±0.3
96.9±0.2
61.4±0.2
47.7±0.2
30±0.2
7
7
7
666*10
647*10
191*10
7 Day
95.5±0.2
1 ±0.2
7
105*10
Chengalroyen (2011) found that, Bacterial strain Amycolatopsis orientalis
SY6 was able to decolorize amido black, janus green and several
triphenylmethane dyes effectively. This suggests that the same enzyme/s
might be involved in the reduction of all these dyes. In general, it was noticed
that bacteria capable of degrading C V were also able to mineralize other
triphenylmethane dyes such as malachite green, brilliant green and basic
fuchsin. This allows for the speculation that either the enzymes responsible
for triphenylmethane class degradation are more lenient in their substrate
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J.Agric.Chem.and Biotechn., Mansoura Univ.Vol. 5 (5): MAy, 2014
interactions or the dye structural differences are minor and hence easier to
accommodate. Additionally, research done on P. pseudomallei found that
decolorization of triphenylmethane dyes was not linked to the molecular
weight or permeability of the compound through the membrane (Azmi et al.,
1998(.
Toxicity evaluation:
Fig. (3). Show 99 % decolorizing of C V by P. geniculata strain AT 17
under the optimum conditions. Toxicity of the remaining C V in the aqueous
solution after 7 days of incubation with the tested microbial strain was
evaluated using B. subtilis as a microbial bioassay test. P. geniculata strain
AT 17 exhibited the highest decolorization for CV. The results showed that
the supernatant of C V after 7 days of incubation with P. geniculata AT 17
had no toxicity which could be detected against B. subtilis as a test organism.
The obtained results were compared with control treatment (C V only) which
revealed 100% of inhibition against B. subtilis under the same conditions (Fig.
4). This implies that the aqueous solution spiked with C V was completely
detoxified after 7 days of treatment with P. geniculata strain AT 17. It has
been reported that these dyes inhibit cell growth by interfering with nucleic
acid synthesis thus decreasing protein synthesis (Azmi et al., 1998). Yatome
et al. (1993) were the first to elucidate the degradation of C V by Nocardia
spp.
Fig. (3). Decolorization of C V by P. geniculata AT 17 in aquatic system.
173
Hauka, F. I. et al.
Inhibition zone
formation
No inhibition zone
formation
Bacillus
subtilis
Bacillus
subtilis
C V + P. geniculata At17
C
V
(Control)
Inhibition
zone
formation
Fig. (4). Biodetoxfication of C V by P. geniculate AT 17 in aquatic
system against B. subtilis as bioassay organism test on
nutrient agar medium.
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المعالجة البيولوجية للملوثات الكيماوية فى المياه
أ -اإلزالةةة البيولوجيةةة ل ةةبرة الك يلةةفاج البمللةةجل الملوثةةة للميةةاه بوال ة ة بكفي يةةا
بليدوموماس جيمكيوالفا
ففحل إلماعيج حوقه , 1الليد بالج عبد المم لب بالج , 2محمةد عبةد ا العو ةى لةلي 1و
1
ع يه اب اهي جاد
- 1قل الميك وبيولوجيا الز اعية ، ،كلية الز اعة ،جامعة المم و ة ,م
- 2قل المبات الز اعل ،كلية الز اعة ،جامعة كل الشيخ ,م .
.
تم دراسة عملٌة إزالة اللون لصبغة الكرٌستال البنفسجً الملوثة للماء من مصادر مختلفة مثل
مصانع النسٌج بواسطة البكتٌرٌا حٌث أنه تم عزل بكتٌرٌا مزٌلة للون صبغة الكرٌستال البنفسجً (رقم
كودي ِ ) AT 17بطرٌقة االمداد الغذائً من عٌنة مٌاه صرف باستخدام الهالة الشفافة (منطقة التحلل الشفافة).
وتم تعرٌف البكتٌرٌا إعتماداَ على الصفات المورفولوجٌة والكٌموحٌوٌة والوراثٌة باستخدام 16S rDNAعلى
أنها بسٌدوموناس جٌنكٌوالتا .Pseudomonas geniculataوتستطٌع هذه الساللة استخدام صبغة
الكرٌستال البنفسجً كمصدر للكربون .ولدراسة أفضل الظروف لعملٌة إزاله اللون بواسطة هذه الساللة وجد
أن أفضل بٌئة هً البٌئة المعدنٌة إلزالة الكرٌستال البنفسجً بعكس بٌئة األجار المغذي التً منعت إزالة اللون
تماما ,كما وجد أن رقم الحموضة 7ودرجة حرارة °55م هى األفضل لنشاط المٌكروب فى عملٌة اإلزالة.
كما ثبط الجلوكوز أٌضا كمصدر للكربون والبٌبتون ومستخلص الخمٌرة ومستخلص اللحم كمصدر للنٌتروجٌن
العضوي لعملٌة إزالة لون الكرٌستال البنفسجً تثبٌطا كامال ولكن وجد من ناحٌة أخرى أن كل من كبرٌتات
األمونٌوم وكلورٌد األم ونٌوم زادت من عملٌة إزالة لون الكرٌستال البنفسجً كلورٌد األمونٌوم كان أفضل
مصدر نٌتروجٌن غٌر عضوى فى ازالة اللون لصبغة الكرستال البنفسجى.
كما اتضح أٌضا أن افضل فترة تحضٌن لعملٌة اإلزالة اللونٌة لصبغة الكرستال البنفسجى هى 7
أٌام .أظهرت النتائج أٌضا أنه قد تم إزالة لون الكرٌستال البنفسجً بنسبة تصل إلى %99ببكتٌرٌا
بسٌدوموناس جٌنكٌوالتا Pseudomonas geniculataفً البٌئة السائلة مقارنة بالبٌئة السائلة غٌر
الملقحة والمستخدمة ككنترول .كما نالحظ عدم وجود سمٌة لصبغة الكرٌستال البنفسجً فً بٌئة األجار المغذى
التً تم تحضٌنها مع بكتٌرٌا بسٌدوموناس جٌنكٌوالتا Pseudomonas geniculataلمدة 7أٌام على
بكتٌرٌا باسٌلٌس سابتلٌس Bacillus subtilisكمٌكروب مستخدم للتقٌٌم الحٌوي.
وأوضحت النتائج أن إزالة اللون كان متوافقا مع زٌادة الكتلة الحٌوٌة لبكتٌرٌا بسٌدوموناس
جٌنكٌوالتا Pseudomonas geniculateفً البٌئة السائلة.
وتبٌن هذه الدراسة أن بكتٌرٌا بسٌدوموناس جٌنكٌوالتا ٌ P. geniculataمكن استخدامها تطبٌقٌا
للمعالجة البٌولوجٌة للملوثات الكٌماوٌة فى المٌاه.
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