Anal Bioanal Chem
DOI 10.1007/s00216-015-8947-0
RESEARCH PAPER
A novel direct spray-from-tissue ionization method for mass
spectrometric analysis of human brain tumors
Alexey Kononikhin 1,3,5 & Evgeny Zhvansky 1,3 & Vsevolod Shurkhay 4 & Igor Popov 1,2,3 &
Denis Bormotov 1,3 & Yury Kostyukevich 1,3,7 & Sofiia Karchugina 1 & Maria Indeykina 1,2 &
Anna Bugrova 2,5 & Natalia Starodubtseva 3,5 & Alexander Potapov 4 &
Eugene Nikolaev 1,2,6,7
Received: 17 June 2015 / Revised: 28 July 2015 / Accepted: 30 July 2015
# Springer-Verlag Berlin Heidelberg 2015
Abstract Real-time feedback about dissected tissue during
the neurosurgical procedure is strongly requested. A novel
direct ionization mass spectrometric method for identifying
pathological differences in tissues is proposed. The method
is based on simultaneous extraction of tissue lipids and
electrospray ionization which allows mass spectrometric data
to be obtained directly from soft tissues. The advantage of this
method is the stable flow of solvent, which leads to stable
time-dependent spectra. The tissues included necrotized tissues and tumor tissues in different combinations. Capability
for direct analysis of samples of dissected tissues during the
neurosurgical procedure is demonstrated. Data validation is
Electronic supplementary material The online version of this article
(doi:10.1007/s00216-015-8947-0) contains supplementary material,
which is available to authorized users.
* Eugene Nikolaev
ennikolaev@rambler.ru
1
Institute for Energy Problems of Chemical Physics of the Russian
Academy of Sciences, Leninskij pr. 38 k.2, 119334 Moscow, Russia
2
Emanuel Institute for Biochemical Physics of the Russian Academy
of Sciences, Kosygina st. 4, 119334 Moscow, Russia
3
Moscow Institute of Physics and Technology, Institutskij bystr. 9,
141700 Dolgoprudnyi, Moscow Region, Russia
4
Burdenko Neurosurgical Institute of the Russian Academy of
Medical Sciences, 4-th Tverskaya-Yamskaya st. 16,
125047 Moscow, Russia
5
Research Center for Obstetrics, Gynecology and Perinatology,
Oparina st. 4, 117997 Moscow, Russia
6
Orekhovich Institute of Biomedical Chemistry of the Russian
Academy of Medical Sciences, Pogodinskaya st. 10,
119121 Moscow, Russia
7
Skolkovo Institute of Science and Technology, Novaya St., 100,
143025 Skolkovo, Russian Federation
conducted by compound identification using precise masses
from the MS profile, MS/MS, and isotopic distribution structure analysis. The method can be upgraded and applied for
real-time identification of tissues during surgery. This paper
describes the technique and its application perspective. For
these purposes, other methods were compared with the investigated one and the results were shown to be reproducible.
Differences in lipid profiles were observed even in tissues
from one patient where distinctions between different samples
could be poor. The paper presents a proof of concept for the
method to be applied in neurosurgery particularly and in tissue
analysis generically. The paper also contains preliminary results proving the possibility of observing differences in mass
spectra of different tumors.
Keywords Ambient mass spectrometry . Brain . Tumor .
Diagnostics . Electrospray . FT ICR
Introduction
One of the greatest barriers to achieving optimal surgical results for infiltrative tumors in the human brain is the difficulty
to distinguish the tumor from intact tissues [1]. Tumors can
closely resemble the healthy brain, often infiltrate brain tissue,
and may be located near to the eloquent areas of the brain.
Although gross total tumor resection leads to an increase in the
overall and progression-free survival, in many cases, tumor
margins cannot be clearly defined. Inadequate or very aggressive surgery leads to higher risks of postoperative complications and a possible decreased quality of life for the patient.
A variety of mapping techniques has been developed to be
used in brain tumor surgery; however, in most cases in clinical
practice, determination of tumor borders is not done in a realtime mode. As for now, magnetic resonance imaging
E. Zhvansky et al.
techniques are of both diagnostic [2] and operative navigational [3] use. These techniques are routinely used at the preoperational stage, and only with limited success in
intraoperational variants [4], mostly because real-time feedback is still not fully developed [5]. Other clinically relevant
methods include fluorescent labeling [6–9], whose limited use
is mostly restricted to certain application areas, caused by
specificity and sensitivity issues [10], and intraoperative ultrasound [5], which is not applicable if tumor density is close to
the density of the brain. Standard histopathological methods
are the gold standard for detecting tumors and can provide
diagnostic information during surgery within half an hour,
but are usually limited to the evaluation of one or a very small
number of segregated samples from each operation [1]. There
are many ideas for solving the problem of the rapid
distinguishing of healthy brain tissue from a brain tumor,
some of which were tested on rodents [11], but none of them
are currently clinically applied. One of the approaches for
such differentiation is by comparing their lipid profiles [12].
For example, gangliosides are used to differentiate astrocytoma tissue from the surrounding tissues and normal control
brain tissues [13, 14], or lipid profiles are used for the determination of tumor borders [15, 16].
An operative profiling method for molecular profiling can
be created based on direct ionization mass spectrometry
methods. Analysis of tissues during tumor removal is one
of the challenging problems for modern MS, but despite the
fact that many technical difficulties hinder the success of
molecular profiling in surgery, many mass spectrometrybased methods have been recently suggested for intraoperative molecular diagnostics and differentiation of human brain
tumors. Desorption electrospray ionization mass spectrometry (DESI MS) [17], matrix-assisted laser desorption ionization (MALDI) [18], rapid evaporative ionization mass spectrometry (REIMS) [19], and sonic spray ionization (SSI) [20]
all yield informative lipid and/or protein profiles for differentiating tumors, while potentially allowing real-time feedback
during the operation. However, these methods include a rather long sample preparation procedure, which makes the creation of a real-time feedback system rather difficult. With
direct ionization from tissue, the period between tissue dissection and sample analysis is significantly reduced. Besides
this, some compounds of the given tissue cannot be detected
by standard mass spectrometric methods such as DESI, ESI,
or leaf spray but can be detected by direct from tissue ionization [21]. Also, brain tumor tissue cannot be shaped into a
required form and then fixed in these conditions; thus, it
cannot form a tip, which is necessary for direct ionization
by the leaf spray method.
In this paper, a modified spray-from-tissue ionization method, basing on an idea initially proposed by Liu et al. [22], is
discussed. In this method, a small bit of the tissue is placed on
a standard medical injection needle through which the solvent
is delivered. Application of a high voltage to the needle creates
an electric field strong enough to initiate an electrospray directly from the sample. The technical novelty of the proposed
method is in the absence of an irregular external solvent flow
(as it was in the Liu et al. paper [22]), which is now continuously pumped to the sample from the needle inside. Thus, in
the suggested method, the problem of sample drying is solved.
This ionization source is very similar to the Bpaper spray^ [23]
and Bleaf spray^ [24]. The spray-from-tissue ionization method supposes the presence of a Btip^ of tissue, as it was in the
Bleaf^ [24] spray or a tip of something containing the adsorbed
sample, as it was in the Bpaper^ [23] spray. So there existed a
problem of obtaining a stable spray from soft tissues, which
cannot form a tip, which is solved in this work. Described, for
example, in the paper of Hu et al. [21], direct ionization from
soft tissue has some complications with spectrum registration
time due to the sample’s sharp end or lack of stable solvent
flow and corresponding sample drying. Also, brain tumor tissue cannot be formed into a tip of a fixed shape.
Methods
Materials All tissues were provided by the Burdenko Neurosurgical Institute. Pathological tissues were dissected during
the neurosurgical procedure and divided into two parts: the
first one was sent for routine examination by a pathologist
(including the immunohistochemical staining), and the second
was frozen in normal saline and sent to the laboratory for mass
spectrometric analysis. The experimental tissues were dissected during only one neurosurgery (dissection of glioblastoma
WHO grade IV). Tissues included necrotic tissue with
necrotized vessels, necrotic tissue with tumor stain, tumor
with necrosis (with a predominance of tumor tissue), tumor,
necrotized tumor (with a predominance of necrotic masses),
and parts of tumor cells. Other samples of tissue from other
neurosurgeries were histochemically identified as astrocytoma, meningioma, and neurinoma. The research has been presented to the ethical board of the Burdenko Neurosurgical
Institute and was approved.
Tissue electrospray ionization
A lab-built prototype, based on electrospray with simultaneous lipid extraction, was used as the ion source: an injection
needle (30 mm in length, 0.6 mm inner diameter KD-FINE
disposable hypodermic needle (KD Medical GmbH Products,
Germany)) was mounted on a holder platform adjacent to the
inlet interface. A freshly thawed biopsy tissue was cut into
approximately 2-mm3 homogeneous samples, and these slices
were imposed on the needle point for analysis. As schematically shown in Fig. 1b, the sample was placed on the tip of a
A novel direct spray-from-tissue ionization method
Fig. 1 (a) The proposed
ionization source interface: a
sample of human brain tissue is
placed on a regular medical
needle. (b) Scheme of the ion
source used for substance
extraction in direct electrospray
ionization
standard medical injection needle. No modifications of the
needle are required. The tip of a standard medical needle has
a cutoff plane on the inner side onto which a bit of the sample
can be put using forceps.
Methanol (HPLC grade), purchased from Merck, was used
as the spray solvent for MS acquisition. The solvent was
pumped through a fused silica glass capillary into the needle
by a syringe pump. The solvent flow was 4±1 μl/min; the
precise value depended on the shape of the sample; higher
flows resulted in a non-stationary Taylor cone and periodical
break-off of large droplets of solvent, while lower flows resulted in the disappearance of a visible Taylor cone and spray
instabilities. Before turning the electrospray high voltage (HV;
5.1 kV in positive mode and 6.0 kV in negative mode; lower
voltages resulted in spray instabilities, while higher ones produced a corona discharge and significant changes in the mass
spectrum) on, the solvent inlet system was used to wet the
sample and to ensure that it does not move from the needle
due to surface charges. The tissues contacted with the solvent
only right before and during MS measurements. The solvent
flowed around the tissue for enough time for surface molecule
extraction to take place, and formed an electrospraying Taylor
cone directed at the mass spectrometer inlet capillary (Fig. 1b).
High voltage was applied to the solvent flow and, subsequently, to the whole needle and its tip. The spray stability was
kept by means of precise needle position adjustment and was
observed with a PULNiX zooming camera. Spray stability
was evaluated by visual estimation of a stable Taylor cone
formation as well as by recording the total ion current (TIC).
Reproducibility of each mass spectrum continuously from
scan to scan was observed by TIC variability, which was in
range of no more than 15 %. Solvent flow was constant during
spectrum registration. Depending on the sample shape, fine
adjustments of the flow rate and voltage were required.
The spray appeared on the end of the injection needle tip,
where the intensity of the electrical field was high enough to
make ionized droplets. Thus, the method does not use a manually created tissue tip (as well as Liu et al. [22]), which would be
E. Zhvansky et al.
Fig. 2 CID spectrum of
PC(34:1)+Na+. The m/z=723.38
peak corresponds to a (N(CH3)3)
neutral loss, while m/z=599.39
and 577.49 peaks correspond to
choline phosphate neutral loss
with the sodium substitute being
either on the product ion or
neutral loss, respectively
A novel direct spray-from-tissue ionization method
very difficult to make from a soft sample; rather, the solvent with
the desorbed tissue itself forms a tip as it moistens the needle.
An ion cyclotron resonance (ICR)-based high-resolution
mass spectrometer Thermo Finnigan LTQ FT Ultra equipped
with a 7T superconducting magnet and controlled by the
XCalibur 2.0.7 software (Thermo Fisher Scientific, Waltham,
MA USA) was used to obtain tandem mass spectra. The samples were analyzed in both positive and negative modes (m/z
200–2000, resolution 56,000 at m/z 800).
To prove the stability of the proposed ionization method, a
series of experiments was carried out and the major compounds identified (as described below) in the spectra of each
tissue sample were compared.
Collision-induced dissociation
Experiments were performed and recorded in an automatic
two-step data-dependent manner. The first step was to obtain
FT ICR mass spectra in the whole mass range (m/z=100–
1000). Then the peaks were identified by MS/MS. On this
second step, the five most intense peaks found in the full
mass spectrum were isolated (isolation width = 2.0),
fragmented by collision-induced dissociation (CID) (normalized collision energy=35.0), and then dynamically excluded
from fragmentation candidates for the next 30 s. Mass spectra of the fragments formed by CID during this second stage
were measured in the LTQ.
Peaks identification
The most intensive peaks were identified by their exact mass
with the Lipid MS Predict tool, by CID MS/MS (see example
on Fig. 2), and by their isotopic distribution with XCalibur
2.0.7 QualBrowser isotopic simulation (mostly to distinguish
the [M+Cl]− ions).
Results and discussions
MS lipid profile analysis
A fast head on analysis of the data allowed to identify 17 lipids
in the negative mode and 14 lipids in the positive mode (see
Tables 1 and 2).
The most abundant ions observed in different samples belong to the following lipid classes: ceramides (Cer), plasmenyl
phosphatidylethanolamines (PE-O), plasmenyl phosphatidic
acid (PA-O), phosphatidylcholines (PC), phosphatidylserines
(PS), galactosylceramides (GalCer), glycerolipids (GL), and
phosphatidylinositols (PI) (Figs. 3 and 4). A strong coincidence between major peaks in spectra from different bits of
one tissue was observed (Fig. 5). A limited coincidence between the lipid profile of Liu et al. and ours also took place,
Table 1 Negative ion description and comparison with the DESI
method. B+^ means that the lipid was denoted in the article [17] by
Eberlin et al., while B−^ means it was not
Mass
Molecular species
DESI [17]
916.6652
ST(26:1)
+
888.6335
ST(24:1)
+
885.5599
PI(38:4)
+
844.5999
834.5369
810.5364
PS[40:1]
PS(40:6)
PS(38:4)
−
+
+
794.5521
788.5502
PC(34:1)+Cl
PS(36:1)
−
+
768.5384
PC(32:0)+Cl
−
750.5497
PE-O(38:5)
+
737.5422
726.5502
PA-O(40:4)
PE-O(36:3)
−
+
682.5950
Cer[42:2]+Cl
−
629.4952
600.5157
598.5006
GL(34:1)
Cer[36:1]+Cl
Cer[36:2]+Cl
−
−
−
572.4846
Cer[34:1]+Cl
−
although, unfortunately, the results of the presented paper cannot be directly compared with the results of Liu et al. because
the investigated tissues were different.
The positive ions were observed in their protonated or
sodiated forms, and the negative ions were either deprotonated
or chlorinated. It should be mentioned that some lipids (specifically PC(32:0) and PC(34:1)) were present (and abundant)
in both positive and negative modes, which gave an
Table 2 Positive ion description and comparison with the DESI
method. B+^ means that the lipid was denoted in the article [17] by
Eberlin et al., while B−^ means it was not
Mass
Molecular species
DESI [17]
832.6788
832.6016
818.6132
810.5914
808.6016
804.5700
790.5948
782.5803
780.5690
768.6064
760.5977
756.5638
754.5489
750.5549
GalCer(d42:2)+Na
PC(38:4)+Na
PC-O(38:4)+Na
PC(36:1)+Na
PC(36:2)+Na
PC(36:4)+Na
PC-O(36:4)+Na
PC(34:1)+Na
PC(34:2)+Na
PC-O(34:1)+Na
PC(34:1)
PC(32:0)+Na
PC(32:1)+Na
PE-O(36:3)+Na
+
−
−
+
+
−
−
+
−
−
−
+
+
+
E. Zhvansky et al.
Fig. 3 A typical negative ion spectrum of brain tumor particles in the m/z range from 500 to 1040. Some of the most abundant peaks are annotated as the
corresponding lipid species. A Negative ion spectrum, B positive ion spectrum
opportunity to confirm the relevancy of the results—there was
no contradiction between the peak intensities measured both
in positive and negative modes.
About 190 peak identifications are presented in Table S3 in
the Electronic Supplementary Material (ESM).
Discussion
Fluorescent labeling is not applicable in some cases due to
method limitations [10]. Ultrasound also has limitations
caused by the specificity of tumor tissue, for example density
[5]. And only mass spectrometry can give specific information
on the molecular composition that can not only describe the
differences in molecular profiles of normal and tumor tissue
but also provide information about tumor borders by the gradient of tumor markers.
The whole process of sample preparation and analysis
takes about 1 min. The sample preparation takes about 30 s
(including sample cutting, placing it on the injection needle,
and also mass spectrum obtaining). Another 30 s is used for
manual spectrum decoding from the raw file and getting a
decoded spectrum for automatic processing. This method
can actually be used in neurosurgery as a rather fast method,
since the common method for brain tumor analysis during
neurosurgery is immunohistochemistry, which is much more
time consuming.
The proposed method presents systematical advantages for
tissue analysis in comparison with other methods. BPaper
spray^ [23] can only be used for absorbed in paper substances;
thus, it has long-term sample preparation. BLeaf spray^ [24]
requires a tip to be formed from the investigated tissue, but it is
impossible to form a fixed tip out of brain tumor tissue, and
this would also lead to long-term preparation.
The advantage of the investigated method of ionization in
comparison to the method suggested by Liu et al. [22] is in the
constant flow of solvent that prevents the sample from drying
and in the long duration of a stable ionization process. Liu’s
A novel direct spray-from-tissue ionization method
Fig. 4 Examples of lipid classes detected in brain tumor samples
[22] method allows stable ionization for only 30 s, while the
method described in this paper allows to obtain spectra for more
than 30 min without significant changes in the registered signal.
For this moment, the suggested method has not been used
for determining tumor margins; only the possibility to distinguish the different pathological tissue types, listed in Table 3
and ESM Table S1, has been shown. Also, the presence of
lipids in different tumor types in negative mode is reflected in
Table S2 in the ESM. Distinguishing different tumor types by
their lipid profile was not the main purpose of the work, but
this somehow reflects the potential of the method.
Some lipids despite their affiliation to different lipid classes
can produce ions that are very close on the m/z scale. Therefore, FT ICR high-resolution mass spectrometry is more suitable and provides more information for tissue profiling than
low-resolution approaches, like triple quadrupole or quadrupole ion traps, typically used for mass spectrometric analysis
of lipids [25, 26]. For example, positive ions of
GalCer(d42:2)+Na+ (m=832.6788) and PC(38:4)+Na+ (m=
832.6016) have a sufficient mass difference to be distinguished in our experimental setup (see Table 2).
The proposed method allowed to identify more than just
the major components of the mass spectra but also lowintensity peaks of the minor components (just a brief analysis gave us information on about 30 compounds in the m/z
range 100–1000). The results on the lipids observed in our
experiments were compared with other works, for example
Eberlin et al. [17], who used DESI MS, and Balog et al.
[19], who used REIMS, for experiments with brain tumor
tissue. Only about half of the identified lipids (plasmenylPE, PS, GalCer, PI) were previously mentioned by Eberlin
et al. in their research (see Tables 1 and 2), and only one
major peak at m/z=885.56 was found to be the same as the
results of Balog et al. [19], which may be due to the
completely different ionization methods used in these studies. There is no opportunity to compare the presented results
with those obtained by different methods of direct ionization
mass spectrometry. Thus, methods which are most close to
direct ionization were selected for comparison.
The proposed method of ionization gives reproducible results: spectra of the different tissue samples consisted of the
same major peaks with similar isotopic distributions during
E. Zhvansky et al.
Fig. 5 A Negative ion spectra of
two necrosis (a, b) and two tumor
(c, d) samples. B Positive ion
spectra of two necrosis (a, b) and
two tumor (c, d) samples
the whole measuring time (see Table 3, ESM Table S1). TIC
fluctuations never exceeded 15 % of the average TIC value
during the experiment. What is more important, there were no
significant changes in the spectra during the registration of one
sample. As shown, for example, by Köhler et al. [12], gliomas
and healthy brain tissues are characterized by different lipid
profiles. Thus, some of these common major components may
be associated with the human brain tumor (Fig. 5). Ion
Table 3
chromatograms for each identified lipid were obtained and
are shown in Figures S1 to S31 in the ESM.
The average number of analyzed samples of each tissue
was about 7 and was limited by the size of the initial biopsy
material, since it was cut into samples of about 2 mm3 each.
The samples analyzed in the proposed experimental setup are
rather small, which means that there is no need to take large
samples of yet unknown tissues for analysis, thus providing
Tissue composition
Tissue no.
Tissue histology description
Peaks in tissue
Reproducibility (number of observing of
lipid classes in different tissue samples/
number of tissue samples)
1
2
3
4
5
6
Necrotic tissue with necrotized vessels
Necrotic tissue with tumor stain
Tumor with necrosis
Tumor
Necrotized tumor
Parts of tumor cells
PE-O, PA-O, PC, PS, Cer, PI, ST
PE-O, PA-O, PC, PS, Cer, PI
PE-O, PA-O, PC, PS, Cer, PI, ST
PE-O, PA-O, PC, PS, Cer, GL, PI, ST
PE-O, PA-O, PC, PS, Cer, PI
PE-O, PA-O, PC, PS, Cer, PI, ST
100
100
100
100
100
100
% (9/9)
% (3/3)
% (6/6)
% (11/11)
% (9/9)
% (8/8)
A novel direct spray-from-tissue ionization method
high spatial resolution for clinical use and reducing the risk of
dissecting non-pathological tissue and operative trauma.
The presented method has some advantages over the
Bpaper^ and Bleaf sprays.^ Since the injection needle has a
tip, the problem of high local electrical field tensity for spray
production is solved by applying high voltage to the needle.
This method allows to measure soft tissues, while Wang et al.
[23] and Liu et al. [24] in their experiments measured only
relatively hard tissues, which were simply reshaped to a sharp
form. The advantage of the presented method is the simplicity
of gaining a stable spray directly from soft tissue.
3.
4.
5.
6.
7.
8.
9.
Conclusion
A new method for soft tissue ionization is presented. It is rather
close to DESI, and other electrospray methods, but has several
considerable advantages such as ionization of soft samples and a
directed spray flow. Stable ionization and consequently stable
mass spectra were obtained. Partial compliance between our
results and those from the literary data was demonstrated. Most
of the major peaks and corresponding compounds are consistent
with those obtained by a close direct ionization mass spectrometric method. This gives us the reason to believe that this method
may be used as a convenient way of ionization in some cases,
since according to the latest publications there is a great interest
and potential in the use of direct spray-from-tissue ionization
methods for intraoperative monitoring of the human brain tumor
resection operations. Differences in lipid profiles were observed
even in tissues from one patient where distinctions between different samples could be miserable. These results were obtained
from one patient and have no control of healthy brain tissue, but
will have one in the future. Therefore, obtained results are a proof
of concept for the tissue express-analysis method. The paper also
contains preliminary results proving the possibility of observing
differences in mass spectra of different tumors.
Acknowledgments The work was supported by the Russian Science
Foundation grant no. 14-24-00114.
Author contributions The manuscript was written through the contribution of all the authors. All the authors have given their approval to the
final version of the manuscript.
10.
11.
12.
13.
14.
15.
16.
17.
18.
19.
20.
21.
22.
Competing financial interest The authors declare no competing financial interest.
23.
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