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Search Results (16,143)

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17 pages, 1520 KiB  
Article
Ultraviolet (Spot)light on Water Treatment: Targeting Inactivation Efficiency and Stress Responses of Gram-Positive and Gram-Negative Bacteria Using UV-B and UV-C LEDs
by Mira Mutschlechner, Daniela Chisté, Daniel Hauptmann and Harald Schöbel
Water 2024, 16(14), 2028; https://doi.org/10.3390/w16142028 - 17 Jul 2024
Abstract
This study examines the inactivation kinetics and stress responses of Gram-positive and Gram-negative waterborne bacteria using ultraviolet (UV)-B and UV-C LEDs at varying fluences. Our findings show that UV-light-emitting diodes (LED) treatment effectively inactivates both bacterial types, achieving over 4-log reductions at 255 [...] Read more.
This study examines the inactivation kinetics and stress responses of Gram-positive and Gram-negative waterborne bacteria using ultraviolet (UV)-B and UV-C LEDs at varying fluences. Our findings show that UV-light-emitting diodes (LED) treatment effectively inactivates both bacterial types, achieving over 4-log reductions at 255 nm and 285 nm wavelengths. Notably, inactivation rates at 285 nm, especially at higher fluences, are comparable to or exceed those at 255 nm. Additionally, UV-B treatment at 285 nm requires shorter exposure times for the same UV dose due to its deeper penetration into water and higher radiant flux. Stress responses varied between species: 255 nm exposure caused more direct DNA damage, triggering the SOS response with recA upregulation, particularly in Gram-positive L. innocua; while 285 nm exposure primarily induced oxidative stress, leading to soxS upregulation, especially in Gram-negative bacteria. These results suggest that UV-B complements UV-C effects by causing reactive oxygen species (ROS) formation in addition to DNA damage, challenging DNA repair. Given the higher cost of UV-C LEDs, our results support the optimization of water treatment systems using UV-B LEDs, which is a promising approach for improving bacterial inactivation while reducing exposure time and energy use. Full article
11 pages, 2439 KiB  
Article
Synergistic Effect of Doxorubicin and Blue Light Irradiation on the Antitumor Treatment of HepG2 Cells in Liver Cancer
by Yun Teng, Zhige Li, Junsong Liu, Lesheng Teng and Hongdong Li
Molecules 2024, 29(14), 3360; https://doi.org/10.3390/molecules29143360 - 17 Jul 2024
Viewed by 84
Abstract
Doxorubicin (DOX) has been an effective antitumor agent for human liver cancer cells; however, an overdose might lead to major side effects appearing in clinical applications. In this work, we present a strategy of combining DOX and blue light (BL) irradiation for the [...] Read more.
Doxorubicin (DOX) has been an effective antitumor agent for human liver cancer cells; however, an overdose might lead to major side effects appearing in clinical applications. In this work, we present a strategy of combining DOX and blue light (BL) irradiation for the antitumor treatment of HepG2 cells (one typical human liver cancer cell line). It is demonstrated that synergetic DOX and BL can significantly reduce cell proliferation and increase the apoptotic rate of HepG2 cells in comparison to individual DOX treatment. The additional BL irradiation is further helpful for enhancing the inhibition of cell migration and invasion. Analyses of reactive oxygen species (ROS) level and Western blotting reveal that the strategy results in more ROS accumulation, mitochondrial damage, and the upregulation of proapoptotic protein (Bcl-2) and downregulation of antiapoptotic protein (Bax). In addition to the improved therapeutic effect, the non-contact BL irradiation is greatly helpful for reducing the dosage of DOX, and subsequently reduces the side effects caused by the DOX drug. These findings offer a novel perspective for the therapeutic approach toward liver cancer with high efficiency and reduced side effects. Full article
(This article belongs to the Special Issue Lead Compounds Discovery and Antitumor Drug Design)
19 pages, 3764 KiB  
Article
Rasagiline Exerts Neuroprotection towards Oxygen–Glucose-Deprivation/Reoxygenation-Induced GAPDH-Mediated Cell Death by Activating Akt/Nrf2 Signaling
by Shimon Lecht, Adi Lahiani, Michal Klazas, Majdi Saleem Naamneh, Limor Rubin, Jiayi Dong, Wenhua Zheng and Philip Lazarovici
Biomedicines 2024, 12(7), 1592; https://doi.org/10.3390/biomedicines12071592 - 17 Jul 2024
Viewed by 86
Abstract
Rasagiline (Azilect®) is a selective monoamine oxidase B (MAO-B) inhibitor that provides symptomatic benefits in Parkinson’s disease (PD) treatment and has been found to exert preclinical neuroprotective effects. Here, we investigated the neuroprotective signaling pathways of acute rasagiline treatment for 22 [...] Read more.
Rasagiline (Azilect®) is a selective monoamine oxidase B (MAO-B) inhibitor that provides symptomatic benefits in Parkinson’s disease (PD) treatment and has been found to exert preclinical neuroprotective effects. Here, we investigated the neuroprotective signaling pathways of acute rasagiline treatment for 22 h in PC12 neuronal cultures exposed to oxygen–glucose deprivation (OGD) for 4 h, followed by 18 h of reoxygenation (R), causing 40% aponecrotic cell death. In this study, 3–10 µM rasagiline induced dose-dependent neuroprotection of 20–80%, reduced the production of the neurotoxic reactive oxygen species by 15%, and reduced the nuclear translocation of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) by 75–90%. In addition, 10 µM rasagiline increased protein kinase B (Akt) phosphorylation by 50% and decreased the protein expression of the ischemia-induced α-synuclein protein by 50% in correlation with the neuroprotective effect. Treatment with 1–5 µM rasagiline induced nuclear shuttling of transcription factor Nrf2 by 40–90% and increased the mRNA levels of the antioxidant enzymes heme oxygenase-1, (NAD (P) H- quinone dehydrogenase, and catalase by 1.8–2.0-fold compared to OGD/R insult. These results indicate that rasagiline provides neuroprotection to the ischemic neuronal cultures through the inhibition of α-synuclein and GAPDH-mediated aponecrotic cell death, as well as via mitochondrial protection, by increasing mitochondria-specific antioxidant enzymes through a mechanism involving the Akt/Nrf2 redox-signaling pathway. These findings may be exploited for neuroprotective drug development in PD and stroke therapy. Full article
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11 pages, 2256 KiB  
Article
Understanding Ameliorating Effects of Boron on Adaptation to Salt Stress in Arabidopsis
by Mei Qu, Xin Huang, Lana Shabala, Anja Thoe Fuglsang, Min Yu and Sergey Shabala
Plants 2024, 13(14), 1960; https://doi.org/10.3390/plants13141960 - 17 Jul 2024
Viewed by 89
Abstract
When faced with salinity stress, plants typically exhibit a slowdown in their growth patterns. Boron (B) is an essential micronutrient for plants that are known to play a critical role in controlling cell wall properties. In this study, we used the model plant [...] Read more.
When faced with salinity stress, plants typically exhibit a slowdown in their growth patterns. Boron (B) is an essential micronutrient for plants that are known to play a critical role in controlling cell wall properties. In this study, we used the model plant Arabidopsis thaliana Col-0 and relevant mutants to explore how the difference in B availability may modulate plant responses to salt stress. There was a visible root growth suppression of Col-0 with the increased salt levels in the absence of B while this growth reduction was remarkably alleviated by B supply. Pharmacological experiments revealed that orthovanadate (a known blocker of H+-ATPase) inhibited root growth at no B condition, but had no effect in the presence of 30 μM B. Salinity stress resulted in a massive K+ loss from mature zones of A. thaliana roots; this efflux was attenuated in the presence of B. Supplemental B also increased the magnitude of net H+ pumping by plant roots. Boron availability was also essential for root halotropism. Interestingly, the aha2Δ57 mutant with active H+-ATPase protein exhibited the same halotropism response as Col-0 while the aha2-4 mutant had a stronger halotropism response (larger bending angle) compared with that of Col-0. Overall, the ameliorative effect of B on the A. thaliana growth under salt stress is based on the H+-ATPase stimulation and a subsequent K+ retention, involving auxin- and ROS-pathways. Full article
(This article belongs to the Section Plant Response to Abiotic Stress and Climate Change)
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21 pages, 5760 KiB  
Article
Vascular Endothelial Growth Factor C (VEGF-C) Sensitizes Lymphatic Endothelial Cells to Oxidative-Stress-Induced Apoptosis through DNA Damage and Mitochondrial Dysfunction: Implications for Lymphedema
by Lazina Hossain, Karina Pereira Gomes, Xiaoyan Yang, Emily Liu, Jacques Du Toit, Pierre-Yves von der Weid and Spencer Bruce Gibson
Int. J. Mol. Sci. 2024, 25(14), 7828; https://doi.org/10.3390/ijms25147828 - 17 Jul 2024
Viewed by 105
Abstract
Secondary lymphedema is caused by damage to the lymphatic system from surgery, cancer treatment, infection, trauma, or obesity. This damage induces stresses such as oxidative stress and hypoxia in lymphatic tissue, impairing the lymphatic system. In response to damage, vascular endothelial growth factor [...] Read more.
Secondary lymphedema is caused by damage to the lymphatic system from surgery, cancer treatment, infection, trauma, or obesity. This damage induces stresses such as oxidative stress and hypoxia in lymphatic tissue, impairing the lymphatic system. In response to damage, vascular endothelial growth factor C (VEGF-C) levels increase to induce lymphangiogenesis. Unfortunately, VEGF-C often fails to repair the lymphatic damage in lymphedema. The underlying mechanism contributing to lymphedema is not well understood. In this study, we found that surgery-induced tail lymphedema in a mouse model increased oxidative damage and cell death over 16 days. This corresponded with increased VEGF-C levels in mouse tail lymphedema tissue associated with macrophage infiltration. Similarly, in the plasma of patients with secondary lymphedema, we found a positive correlation between VEGF-C levels and redox imbalance. To determine the effect of oxidative stress in the presence or absence of VEGF-C, we found that hydrogen peroxide (H2O2) induced cell death in human dermal lymphatic endothelial cells (HDLECs), which was potentiated by VEGF-C. The cell death induced by VEGF-C and H2O2 in HDLECs was accompanied by increased reactive oxygen species (ROS) levels and a loss of mitochondrial membrane potential. Antioxidant pre-treatment rescued HDLECs from VEGF-C-induced cell death and decreased ROS under oxidative stress. As expected, VEGF-C increased the number of viable and proliferating HDLECs. However, upon H2O2 treatment, VEGF-C failed to increase either viable or proliferating cells. Since oxidative stress leads to DNA damage, we also determined whether VEGF-C treatment induces DNA damage in HDLECs undergoing oxidative stress. Indeed, DNA damage, detected in the form of gamma H2AX (γH2AX), was increased by VEGF-C under oxidative stress. The potentiation of oxidative stress damage induced by VEFG-C in HDLECs was associated with p53 activation. Finally, the inhibition of vascular endothelial growth factor receptor-3 (VEGFR-3) activation blocked VEGF-C-induced cell death following H2O2 treatment. These results indicate that VEGF-C further sensitizes lymphatic endothelial cells to oxidative stress by increasing ROS and DNA damage, potentially compromising lymphangiogenesis. Full article
(This article belongs to the Section Molecular Pathology, Diagnostics, and Therapeutics)
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12 pages, 3077 KiB  
Article
Molecular Identification of the Glutaredoxin 5 Gene That Plays Important Roles in Antioxidant Defense in Arma chinensis (Fallou)
by Qiaozhi Luo, Zhongjian Shen, Nipapan Kanjana, Xingkai Guo, Huihui Wu and Lisheng Zhang
Insects 2024, 15(7), 537; https://doi.org/10.3390/insects15070537 - 17 Jul 2024
Viewed by 117
Abstract
Glutaredoxin (Grx) is a group of redox enzymes that control reactive oxygen species (ROS), traditionally defined as redox regulators. Recent research suggested that members of the Grx family may be involved in more biological processes than previously thought. Therefore, we cloned the AcGrx5 [...] Read more.
Glutaredoxin (Grx) is a group of redox enzymes that control reactive oxygen species (ROS), traditionally defined as redox regulators. Recent research suggested that members of the Grx family may be involved in more biological processes than previously thought. Therefore, we cloned the AcGrx5 gene and identified its role in A. chinensis diapause. Sequence analysis revealed the ORF of AcGrx5 was 432 bp, encoding 143 amino acids, which was consistent with the homologous sequence of Halyomorpha halys. RT-qPCR results showed that AcGrx5 expression was the highest in the head, and compared with non-diapause conditions, diapause conditions significantly increased the expression of AcGrx5 in the developmental stages. Further, we found that 15 °C low-temperature stress significantly induced AcGrx5 expression, and the expression of antioxidant enzyme genes AcTrx2 and AcTrx-like were significantly increased after AcGrx5 knockdown. Following AcGrx5 silencing, there was a considerable rise in the levels of VC content, CAT activity, and hydrogen peroxide content, indicating that A. chinensis was exposed to high levels of reactive oxygen species. These results suggested that the AcGrx5 gene may play a key role in antioxidant defense. Full article
(This article belongs to the Section Insect Pest and Vector Management)
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23 pages, 36138 KiB  
Article
Human–Robot Collaborative Manufacturing Cell with Learning-Based Interaction Abilities
by Joel Baptista, Afonso Castro, Manuel Gomes, Pedro Amaral, Vítor Santos, Filipe Silva and Miguel Oliveira
Robotics 2024, 13(7), 107; https://doi.org/10.3390/robotics13070107 - 17 Jul 2024
Viewed by 117
Abstract
This paper presents a collaborative manufacturing cell implemented in a laboratory setting, focusing on developing learning-based interaction abilities to enhance versatility and ease of use. The key components of the system include 3D real-time volumetric monitoring for safety, visual recognition of hand gestures [...] Read more.
This paper presents a collaborative manufacturing cell implemented in a laboratory setting, focusing on developing learning-based interaction abilities to enhance versatility and ease of use. The key components of the system include 3D real-time volumetric monitoring for safety, visual recognition of hand gestures for human-to-robot communication, classification of physical-contact-based interaction primitives during handover operations, and detection of hand–object interactions to anticipate human intentions. Due to the nature and complexity of perception, deep-learning-based techniques were used to enhance robustness and adaptability. The main components are integrated in a system containing multiple functionalities, coordinated through a dedicated state machine. This ensures appropriate actions and reactions based on events, enabling the execution of specific modules to complete a given multi-step task. An ROS-based architecture supports the software infrastructure among sensor interfacing, data processing, and robot and gripper controllers nodes. The result is demonstrated by a functional use case that involves multiple tasks and behaviors, paving the way for the deployment of more advanced collaborative cells in manufacturing contexts. Full article
(This article belongs to the Section Industrial Robots and Automation)
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16 pages, 4431 KiB  
Article
The C2H2 Transcription Factor Con7 Regulates Vegetative Growth, Cell Wall Integrity, Oxidative Stress, Asexual Sporulation, Appressorium and Hyphopodium Formation, and Pathogenicity in Colletotrichum graminicola and Colletotrichum siamense
by Shuangzhen Zhou, Shayu Liu, Chenchen Guo, Hanwen Wei, Zhihui He, Zhiqiang Liu and Xiaoyu Li
J. Fungi 2024, 10(7), 495; https://doi.org/10.3390/jof10070495 - 17 Jul 2024
Viewed by 97
Abstract
The Colletotrichum genus is listed as one of the top 10 important plant pathogens, causing significant economic losses worldwide. The C2H2 zinc finger protein serves as a crucial transcription factor regulating growth and development in fungi. In this study, we [...] Read more.
The Colletotrichum genus is listed as one of the top 10 important plant pathogens, causing significant economic losses worldwide. The C2H2 zinc finger protein serves as a crucial transcription factor regulating growth and development in fungi. In this study, we identified two C2H2 transcription factors, CgrCon7 and CsCon7, in Colletotrichum graminicola and Colletotrichum siamense, as the orthologs of Con7p in Magnaporthe oryzae. Both CgrCon7 and CsCon7 have a typical C2H2 zinc finger domain and exhibit visible nuclear localization. Disrupting Cgrcon7 or Cscon7 led to a decreased growth rate, changes in cell wall integrity, and low tolerance to H2O2. Moreover, the deletion of Cgrcon7 or Cscon7 dramatically decreased conidial production, and their knockout mutants also lost the ability to produce appressoria and hyphopodia. Pathogenicity assays displayed that deleting Cgrcon7 or Cscon7 resulted in a complete loss of virulence. Transcriptome analysis showed that CgrCon7 and CsCon7 were involved in regulating many genes related to ROS detoxification, chitin synthesis, and cell wall degradation, etc. In conclusion, CgrCon7 and CsCon7 act as master transcription factors coordinating vegetative growth, oxidative stress response, cell wall integrity, asexual sporulation, appressorium formation, and pathogenicity in C. graminicola and C. siamense. Full article
(This article belongs to the Section Environmental and Ecological Interactions of Fungi)
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23 pages, 1999 KiB  
Review
The Role of Reactive Oxygen Species in Age-Related Macular Degeneration: A Comprehensive Review of Antioxidant Therapies
by Merve Kulbay, Kevin Y. Wu, Gurleen K. Nirwal, Paul Bélanger and Simon D. Tran
Biomedicines 2024, 12(7), 1579; https://doi.org/10.3390/biomedicines12071579 - 16 Jul 2024
Viewed by 170
Abstract
This review article delves into the intricate roles of reactive oxygen species (ROS) in the pathogenesis of age-related macular degeneration (AMD). It presents a detailed analysis of the oxidative stress mechanisms that contribute to the development and progression of these diseases. The review [...] Read more.
This review article delves into the intricate roles of reactive oxygen species (ROS) in the pathogenesis of age-related macular degeneration (AMD). It presents a detailed analysis of the oxidative stress mechanisms that contribute to the development and progression of these diseases. The review systematically explores the dual nature of ROS in ocular physiology and pathology, underscoring their essential roles in cellular signaling and detrimental effects when in excess. In the context of AMD, the focus is on the oxidative impairment in the retinal pigment epithelium and Bruch’s membrane, culminating in the deterioration of macular health. Central to this review is the evaluation of various antioxidant strategies in the prevention and management of AMD. It encompasses a wide spectrum of antioxidants, ranging from dietary nutrients like vitamins C and E, lutein, and zeaxanthin to pharmacological agents with antioxidative properties. The review also addresses novel therapeutic approaches, including gene therapy and nanotechnology-based delivery systems, aiming to enhance antioxidant defense mechanisms in ocular tissues. The article concludes by synthesizing current research findings, clinical trial data, and meta-analyses to provide evidence-based recommendations. It underscores the need for further research to optimize antioxidant therapies, considering individual patient factors and disease stages. This comprehensive review thus serves as a valuable resource for clinicians, researchers, and healthcare professionals in ophthalmology, offering insights into the potential of antioxidants in mitigating the burden of AMD. Full article
(This article belongs to the Section Cell Biology and Pathology)
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14 pages, 2898 KiB  
Article
Generation of a Potato Radiation Mutation System to Analyse the Features of Radiation Mutant RM1
by Liqin Li, Linjuan Jiang, Bi Ren, Yifei Lu, Chengcheng Lv, Chenrui Wang, Liming Lu and Shimin Yang
Agronomy 2024, 14(7), 1547; https://doi.org/10.3390/agronomy14071547 - 16 Jul 2024
Viewed by 207
Abstract
Potatoes are widely planted worldwide and are the third most important food crop. Mutation breeding involves the artificial use of various physical and chemical factors to induce plants to produce new genotypes. In this study, we established a potato radiation mutation system and [...] Read more.
Potatoes are widely planted worldwide and are the third most important food crop. Mutation breeding involves the artificial use of various physical and chemical factors to induce plants to produce new genotypes. In this study, we established a potato radiation mutation system and analysed the features of a radiation mutant. The LD50 of the potato callus was 24.8 Gy after linear regression analysis. The radiation mutant 1 (RM1) showed significant dwarfism and strong growth; RM1 plants decreased in height by 31%. The root and leaf fresh weights of the RM1 increased 1.8-fold compared to the wild-type (WT, Chuanyu 10) cultivar. Leaf microstructure results showed that the thicknesses of the upper epidermis and lower epidermis of RM1 plants were greater than those of the WT cultivar. Transcriptome analysis of seeding revealed 1179 upregulated and 1641 downregulated differentially expressed genes (DEGs) in RM1 plants. Further analysis showed that the expression levels of WRKY and MYB transcription factors, CIPK and MAPK protein kinases, ABC transporters, hormones, and ROS pathway genes were altered. These results provide theoretical support for potato breeding research and enrich the functional network of vital breeding-related genes. Full article
(This article belongs to the Section Crop Breeding and Genetics)
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16 pages, 4742 KiB  
Article
Isolation, Characterization, and Functional Properties of Antioxidant Peptides from Mulberry Leaf Enzymatic Hydrolysates
by Yichen Zhou, Rijun Zhang, Junyong Wang, Yucui Tong, Jing Zhang, Zhenzhen Li, Haosen Zhang, Zaheer Abbas, Dayong Si and Xubiao Wei
Antioxidants 2024, 13(7), 854; https://doi.org/10.3390/antiox13070854 - 16 Jul 2024
Viewed by 191
Abstract
Recent evidence suggests that mulberry leaves have good antioxidant activity. However, what the antioxidant ingredient is and how the ingredient works are still not well understood. In this study, we enzymatically hydrolyze mulberry leaf proteins (MLPs) using neutral protease and find that the [...] Read more.
Recent evidence suggests that mulberry leaves have good antioxidant activity. However, what the antioxidant ingredient is and how the ingredient works are still not well understood. In this study, we enzymatically hydrolyze mulberry leaf proteins (MLPs) using neutral protease and find that the mulberry leaf protein hydrolysates (MLPHs) have stronger antioxidant activity compared to MLPs. We separate the core antioxidant components in MLPHs by ion-exchange columns and molecular sieves and identify 798 antioxidant peptides by LC-MS/MS. Through bioinformatics analysis and biochemical assays, we screen two previously unreported peptides, P6 and P7, with excellent antioxidant activities. P6 and P7 not only significantly reduce ROS in cells but also improve the activities of the antioxidant enzymes SOD and CAT. In addition, both peptides are found to exert protective effects against H2O2-induced chromatin damage and cell apoptosis. Collectively, these results provide support for the application of mulberry leaf peptides as antioxidants in the medical, food and livestock industries. Full article
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17 pages, 2741 KiB  
Review
The Antioxidant Properties, Metabolism, Application and Mechanism of Ferulic Acid in Medicine, Food, Cosmetics, Livestock and Poultry
by Mengli Zheng, Yating Liu, Guanfeng Zhang, Zhikang Yang, Weiwei Xu and Qinghua Chen
Antioxidants 2024, 13(7), 853; https://doi.org/10.3390/antiox13070853 - 16 Jul 2024
Viewed by 200
Abstract
Ferulic acid is a ubiquitous ingredient in cereals, vegetables, fruits and Chinese herbal medicines. Due to the ferulic phenolic nucleus coupled to an extended side chain, it readily forms a resonant-stable phenoxy radical, which explains its potent antioxidant potential. In addition, it also [...] Read more.
Ferulic acid is a ubiquitous ingredient in cereals, vegetables, fruits and Chinese herbal medicines. Due to the ferulic phenolic nucleus coupled to an extended side chain, it readily forms a resonant-stable phenoxy radical, which explains its potent antioxidant potential. In addition, it also plays an important role in anti-cancer, pro-angiogenesis, anti-thrombosis, neuroprotection, food preservation, anti-aging, and improving the antioxidant performance of livestock and poultry. This review provides a comprehensive summary of the structure, mechanism of antioxidation, application status, molecular mechanism of pharmacological activity, existing problems, and application prospects of ferulic acid and its derivatives. The aim is to establish a theoretical foundation for the utilization of ferulic acid in medicine, food, cosmetics, livestock, and poultry. Full article
(This article belongs to the Section Natural and Synthetic Antioxidants)
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20 pages, 5758 KiB  
Article
Spotlight on Secondary Metabolites Produced by an Early-Flowering Apulian Artichoke Ecotype Sanitized from Virus Infection by Meristem-Tip-Culture and Thermotherapy
by Roberta Spanò, Patrizia Gena, Vito Linsalata, Valeria Sini, Isabella D’Antuono, Angela Cardinali, Pietro Cotugno, Giuseppe Calamita and Tiziana Mascia
Antioxidants 2024, 13(7), 852; https://doi.org/10.3390/antiox13070852 - 16 Jul 2024
Viewed by 302
Abstract
Globe artichoke (Cynara cardunculus L. subsp. scolymus) is an important crop of the Mediterranean basin characterized by many properties, like hepatoprotective, anticarcinogenic, antioxidant, antibacterial, and beneficial to human health. The high bioactive compounds (BACs) content, as polyphenols, has attracted the research [...] Read more.
Globe artichoke (Cynara cardunculus L. subsp. scolymus) is an important crop of the Mediterranean basin characterized by many properties, like hepatoprotective, anticarcinogenic, antioxidant, antibacterial, and beneficial to human health. The high bioactive compounds (BACs) content, as polyphenols, has attracted the research interest in artichoke extracts. We analysed the changes in polyphenol transcriptome profile between sanitized (S) virus-free and non-sanitized (NS) artichoke plants, focusing on genes involved in phenylpropanoid metabolic pathway and flavonoid biosynthesis. A total of 2458 upregulated and 2154 downregulated differentially expressed genes (DEGs) were functionally characterized. Among them, 31 and 35 KEGG orthology entries characterized by upregulated and downregulated DEGs, respectively, were involved in the biosynthesis of other secondary metabolites. A downregulation of PAL, C4H, 4CL, HST/HQT, C3′H, CCoAMT, CCR1, and F5H, was observed in S artichoke compared to NS one, whereas the CSE, CHS, and CHI genes were upregulated in S samples. Transcriptome results were compared to the polyphenols accumulation in S and NS artichoke leaves. A higher content of total polyphenols was observed in older leaves of NS samples, compared to extracts obtained from young leaves or from S plants, and this result was associated with the presence of viral infections in NS plants. In all the conditions tested, the most represented compound was chlorogenic acid, followed by luteolin-7-O-glucoside. The different composition of each extract was evaluated by a polyphenol dose–response treatment on the rodent hepatoma FaO cell line to the accumulation of reactive oxygen species (ROS). A significant reduction in ROS content ranging between −40% and −48% was observed when 10–20 mg/L of polyphenols from NS or S plants were used, characterized by a specific profile of compounds. To reduce MetOH residues in polyphenol extracts, a supercritical fluid CO2 extraction was evaluated to propose a sustainable green extraction. Full article
(This article belongs to the Special Issue Antioxidant and Biological Properties of Plant Extracts—3rd Edition)
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15 pages, 925 KiB  
Article
Entity-Alignment Interaction Model Based on Chinese RoBERTa
by Ping Feng, Boning Zhang, Lin Yang and Shiyu Feng
Appl. Sci. 2024, 14(14), 6162; https://doi.org/10.3390/app14146162 - 15 Jul 2024
Viewed by 240
Abstract
Entity alignment aims to match entities with the same semantics from different knowledge graphs. Most existing studies use neural networks to combine graph-structure information and additional entity information (such as names, descriptions, images, and attributes) to achieve entity alignment. However, due to the [...] Read more.
Entity alignment aims to match entities with the same semantics from different knowledge graphs. Most existing studies use neural networks to combine graph-structure information and additional entity information (such as names, descriptions, images, and attributes) to achieve entity alignment. However, due to the heterogeneity of knowledge graphs, aligned entities often do not have the same neighbors, which makes it difficult to utilize the structural information from knowledge graphs and results in a decrease in alignment accuracy. Therefore, in this paper, we propose an interaction model that exploits only the additional information on entities. Our model utilizes names, attributes, and neighbors of entities for interaction and introduces attention interaction to extract features to further evaluate the matching scores between entities. Our model is applicable to Chinese datasets, and experimental results show that it has achieved good results on the Chinese medical datasets denoted MED-BBK-9K. Full article
(This article belongs to the Special Issue Natural Language Processing (NLP) and Applications—2nd Edition)
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28 pages, 10093 KiB  
Review
Recent Developments in Small-Molecule Fluorescent Probes for Cellular Senescence
by Junyoung Park, Youngjun Lee and Jongmin Park
Chemosensors 2024, 12(7), 141; https://doi.org/10.3390/chemosensors12070141 - 15 Jul 2024
Viewed by 332
Abstract
Cellular senescence is a recently emerged research topic in modern biology. Often described as a double-edged sword, it encompasses numerous essential biological processes, including beneficial effects such as wound healing and embryonic development, as well as detrimental contributions to chronic inflammation and tumor [...] Read more.
Cellular senescence is a recently emerged research topic in modern biology. Often described as a double-edged sword, it encompasses numerous essential biological processes, including beneficial effects such as wound healing and embryonic development, as well as detrimental contributions to chronic inflammation and tumor development. Consequently, there is an increasing need to unravel the intricate networks of senescence and develop reliable detection methods to distinguish it from related phenomena. To address these challenges, a variety of detection methods have been developed. In particular, small-molecule fluorescent probes offer distinct advantages such as suitability for real-time live cell monitoring and in vivo imaging, superior tunable properties, and versatile applications. In this review, we explored recent advancements in the development of small-molecule fluorescent probes toward monitoring cellular senescence by targeting various senescence-related biological phenomena. These phenomena include the upregulation of senescence-associated enzymes, perturbation of the subcellular environment, and increased endogenous ROS levels. Moreover, multi-senescence biomarker-targeting approaches are also discussed to improve their sensitivities and specificities for the detection of cellular senescence. With recent advances in senescence probe development, current challenges in this field are also discussed to facilitate further progress. Full article
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