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17 pages, 1039 KiB  
Article
Born-Digital Memes as Archival Discourse: A Linked-Data Analysis of Cultural Sentiment and Polarization
by Orchida Fayez Ismail
Journal. Media 2025, 6(1), 28; https://doi.org/10.3390/journalmedia6010028 (registering DOI) - 15 Feb 2025
Abstract
This study investigates how born-digital memes about high-profile events can serve as rich archival resources for understanding contemporary cultural phenomena and public sentiment by using a linked-data framework. Using a mixed-method approach, this study analyzes memes from a high-profile trial through web scraping [...] Read more.
This study investigates how born-digital memes about high-profile events can serve as rich archival resources for understanding contemporary cultural phenomena and public sentiment by using a linked-data framework. Using a mixed-method approach, this study analyzes memes from a high-profile trial through web scraping and linked-data structures to map themes, sentiments, and cultural references. The linked-data frame includes data collection and integration, semantic web technologies, ontology development, and API data access. The findings point to dominant narratives and shifting sentiment, which further illustrate how such memes reflect and contribute to the polarization of the societal discourse concerning the event. This research is relevant for understanding digital culture, exploring the archival potential of born-digital materials, and assessing the dynamics of public opinion in widely publicized cases. By showing the efficiency of linked data methodologies in the analysis of born-digital discourse, we add valuable insights to both digital humanities and social sciences, offering a new approach of studying ephemeral online content as cultural artifacts. Full article
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23 pages, 2096 KiB  
Article
Long-Term Variability in the Content of Some Metals and Metalloids in Aesculus Flowers: A Four-Year Study Using ICP OES and PCA Analysis
by Veronica D’Eusanio, Elia Frignani, Andrea Marchetti, Laura Pigani, Mirco Rivi and Fabrizio Roncaglia
Molecules 2025, 30(4), 908; https://doi.org/10.3390/molecules30040908 (registering DOI) - 15 Feb 2025
Abstract
This study investigates the content of some metals and metalloids in the flowers of three Aesculus cultivars (AHP, Aesculus hippocastanum pure species, with white flowers; AHH, Aesculus hippocastanum hybrid species, with pink flowers; and AXC, Aesculus × carnea, with red flowers) over [...] Read more.
This study investigates the content of some metals and metalloids in the flowers of three Aesculus cultivars (AHP, Aesculus hippocastanum pure species, with white flowers; AHH, Aesculus hippocastanum hybrid species, with pink flowers; and AXC, Aesculus × carnea, with red flowers) over a four-year period (2016–2019) using inductively coupled plasma optical emission spectrometry (ICP OES) and principal component analysis (PCA). The research focuses on assessing macro- and micro-elemental compositions, identifying variations in mineral uptake, and exploring potential correlations with soil composition. Results highlight significant differences in elemental profiles among the three species, despite similar total ash content. Potassium and phosphorus emerged as dominant macroelements, with AXC showing lower magnesium levels compared to AHP and AHH. Particularly intriguing was the detection of antimony in all cultivars, raising questions about its role and bioaccumulation pathways in floral tissues. Iron and aluminum concentrations varied significantly across species, indicating species-specific metal transport mechanisms. Nickel content showed temporal fluctuations, potentially influenced by climatic conditions and soil properties. PCA revealed distinct clustering patterns, linking elemental concentrations to specific species and years. This comprehensive analysis enhances understanding of metal absorption and distribution in ornamental plants, providing insights into their metabolic processes and potential implications for environmental monitoring and phytoremediation strategies. Full article
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18 pages, 5354 KiB  
Article
Microalgal Diversity as Bioindicators for Assessing and Sustaining Water Quality in the High Mountain Lakes of Quimsacocha, Azuay, Ecuador
by Ernesto Delgado-Fernández, Darío Cruz, Rubén Ayavaca, Ángel Benítez and Bolívar Hernández
Sustainability 2025, 17(4), 1620; https://doi.org/10.3390/su17041620 (registering DOI) - 15 Feb 2025
Abstract
Phytoplankton has an essential role as a primary producer in lakes, providing information on environmental conditions and water quality. The objective of this research was to inventory, characterize, and assess the diversity of microalgae in the Quimsacocha lake system in Azuay, Ecuador. Water [...] Read more.
Phytoplankton has an essential role as a primary producer in lakes, providing information on environmental conditions and water quality. The objective of this research was to inventory, characterize, and assess the diversity of microalgae in the Quimsacocha lake system in Azuay, Ecuador. Water samples were collected from the two most important Quimsacocha lakes to morphologically characterize the microalgae and evaluate their diversity. The diversity and physicochemical parameters were measured to evaluate and explain differences in community richness and composition using multivariate analysis (NMDS and PERMANOVA). The level of organic pollution in the lakes was estimated using the Pollution Index, and the trophic status was assessed using dominant phytoplankton (AARL-PP Score). Eighty morphospecies were identified within 25 genera, 16 families and 8 classes. The Bacillariophyceae class was the most diverse, represented by five families. The genera Synedra, Chlorella, and Cosmarium were the most abundant, suggesting a moderate level of organic pollution and a mesotrophic state in the lakes. Physicochemical parameters such as temperature, pH, dissolved oxygen and electrical conductivity were similar in both lakes. Nonetheless, the lake depth was different, varying between 0.9 and 8 m in LQA (with one extreme value of 22 m), compared to LQB, which had depths between 7 and 19 m. Alpha diversity revealed a significant difference (p = 0.0001) in species abundance between the two lakes, while specific richness was similar (p = 0.8213). In terms of beta diversity, a significant difference in species composition was observed (p = 0.001). This study provides base-line information regarding the ecological status of these Andean lakes, being of great help in developing conservation plans to preserve their biodiversity and water quality for human consumption. Full article
(This article belongs to the Section Sustainability, Biodiversity and Conservation)
25 pages, 10447 KiB  
Article
Multi-Temporal Analysis of Cropping Patterns and Intensity Using Optical and SAR Satellite Data for Sustaining Agricultural Production in Tamil Nadu, India
by Sellaperumal Pazhanivelan, Ramalingam Kumaraperumal, Manchuri Vishnu Priya, Kalpana Rengabashyam, Kanaka Shankar, Moorthi Nivas Raj and Manoj Kumar Yadav
Sustainability 2025, 17(4), 1613; https://doi.org/10.3390/su17041613 (registering DOI) - 15 Feb 2025
Viewed by 12
Abstract
Analyzing the spatial and temporal trends in cropping patterns and intensity on a larger scale is essential for implementing timely policy decisions and strategies in response to climate change and variability. By converting cropping intensity estimates, we can compute net and gross production [...] Read more.
Analyzing the spatial and temporal trends in cropping patterns and intensity on a larger scale is essential for implementing timely policy decisions and strategies in response to climate change and variability. By converting cropping intensity estimates, we can compute net and gross production values, indirectly indicating food security status in the study region. This study compared the utility of optical (MOD13Q1) and SAR (Sentinel 1A) datasets for determining cropping patterns and associated intensity estimates across multiple agricultural seasons from 2019 to 2023, with spatial resolutions of 250 m and 20 m, respectively. The analysis revealed that the highest and lowest gross cropped areas using Sentinel 1A data were 55.85 lakh hectares (2022–2023) and 52.88 lakh hectares (2019–2020), respectively. For MODIS data, the highest and lowest gross cropped areas were 62.07 lakh hectares (2022–2023) and 56.87 lakh hectares (2019–2020). Similarly, the highest and lowest net sown areas using Sentinel 1A data were 43.71 lakh hectares (2022–2023) and 41.76 lakh hectares (2019–2020), and for MODIS data, the values were 48.81 lakh hectares (2022–2023) and 46.39 lakh hectares (2019–2020), respectively. Regardless of the datasets used, the highest gross and net cropped areas were reported in Tiruvannamalai district and the lowest in Kanchipuram district. Thiruvarur district reported the highest cropping intensity, while Sivagangai district had the lowest. Among all seasons, the rabi season accounted for the maximum area, followed by the kharif and summer seasons. The study concluded that single cropping (51%) was the dominant cropping pattern in Tamil Nadu, followed by double cropping (31%) and triple cropping (17%) in both datasets. Sentinel 1A data showed better performance in estimating gross and net cropped areas than optical data, with deviations ranging from 7.02% to 11.01%, regardless of the year and cropping estimates derived. The results indicated that the spatial resolution of the datasets was not a significant factor in determining cropping patterns and intensity on a larger scale. However, this may differ for smaller study areas. Full article
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26 pages, 780 KiB  
Article
The Microbiological Background of Medication-Related Osteonecrosis of the Jaw (MRONJ): Clinical Evidence Based on Traditional Culture and Molecular Biological Detection Methods
by Zsanett Kövér, Márió Gajdács, Beáta Polgár, Dóra Szabó and Edit Urbán
Antibiotics 2025, 14(2), 203; https://doi.org/10.3390/antibiotics14020203 (registering DOI) - 15 Feb 2025
Viewed by 97
Abstract
Background: Medication-related osteonecrosis of the jaw (MRONJ) is a common adverse event following antiresorptive treatment, leading to chronic inflammation and exposed, necrotic bone surfaces in the jawbone. There is an increasing recognition of the role of compositional changes in the colonizing members [...] Read more.
Background: Medication-related osteonecrosis of the jaw (MRONJ) is a common adverse event following antiresorptive treatment, leading to chronic inflammation and exposed, necrotic bone surfaces in the jawbone. There is an increasing recognition of the role of compositional changes in the colonizing members of the oral microbiota implicated in triggering and/or maintaining MRONJ. The aim of our study was to characterize the culturable and non-culturable microbiota—with particular focus on Actinomyces spp. and Actinomyces-like organisms (ALOs)—from surgically removed bone samples of MRONJ patients and healthy control subjects. Methods: n = 35 patients (median age: 70 years) in various stages of MRONJ, with a history of receiving oral or intravenous antiresorptive treatment were included in the study. The controls (n = 35; median age: 35 years) consisted of otherwise healthy individuals undergoing tooth extraction. Traditional, quantitative, aerobic, and anaerobic culture, and Actinomyces-specific PCR was performed for all bone samples from patients and controls, while microbiome analyses—based on 16S rRNA sequencing—were carried out in 5-5 randomly selected samples. Mann–Whitney U test, Wilcoxon rank sum test (alpha diversity), and PERMANOVA analysis (beta diversity) were performed. Results: In MRONJ samples, 185 anaerobic isolates, corresponding to 65 different species were identified (vs. 72 isolates, corresponding to 27 different species in the control group). The detection of Actinomyces spp. and ALOs was more common in MRONJ bone samples, based on traditional culture (65.7% vs. 17.1%; p < 0.001) and PCR (82.9% vs. 37.1%; p < 0.001), respectively. The isolation of Fusobacterium spp. (22 vs. 7; p = 0.001), Prevotella spp. (22 vs. 6; p = 0.034), and Gram-positive anaerobic cocci (GPAC) (30 vs. 9; p = 0.016) was significantly more common in MRONJ patient samples. The microbiota of the controls’ bone samples were characterized by a considerable dominance of Streptococcus spp. and Veillonella spp, while the bacterial abundance rates were substantially more heterogeneous in MRONJ bone samples. Notable differences were not observed among the samples related to the abundance of Actinomyces in the bone microbiota. Conclusions: According to the “infection hypothesis”, alterations in the oral microbiome—with Actinomyces and ALOs being the most relevant—may play a key role in the development, aggravation, and progression of MRONJ. The timely detection of Actinomyces in necrotic bone is crucial, as it has important therapeutic implications. Full article
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16 pages, 617 KiB  
Article
How Are Brain Fog Symptoms Related to Diet, Sleep, Mood and Gastrointestinal Health? A Cross-Sectional Study
by Canan Altinsoy and Derya Dikmen
Medicina 2025, 61(2), 344; https://doi.org/10.3390/medicina61020344 (registering DOI) - 15 Feb 2025
Viewed by 115
Abstract
Background and Objectives: Brain fog, characterized by cognitive difficulties such as memory impairment, lack of focus, and mental fatigue, is a common symptom reported during recovery from COVID-19, particularly in long COVID cases. This study explores potential triggers such as sleep quality, [...] Read more.
Background and Objectives: Brain fog, characterized by cognitive difficulties such as memory impairment, lack of focus, and mental fatigue, is a common symptom reported during recovery from COVID-19, particularly in long COVID cases. This study explores potential triggers such as sleep quality, mood, and gastrointestinal health and examines the link between adherence to the MIND diet and brain fog severity. Materials and Methods: A cross-sectional study was conducted between 1 July and 15 December 2022. The questionnaire assessed brain fog symptoms, dietary habits, sleep quality, mood, and gastrointestinal symptoms. Linear regression analysis examined the relationships between brain fog symptoms, demographic factors, sleep quality, MIND diet adherence, and gastrointestinal symptoms. Results: Brain Fog Scale (BFS) scores were significantly higher in individuals who had COVID-19 (p < 0.05) and even higher in those with reinfection. Women had higher BFS and Brain Fog Severity Score (BFSS), MIND Diet, The Gastrointestinal Symptom Rating Scale (GSRS), Brief Mood Introspection Scale (BMIS) Pleasant-Unpleasant scores (p < 0.05). BFS and BFSS were positively correlated with GSRS (p < 0.05), while no correlation was found with MIND diet adherence. A negative correlation was observed between BFS and Sleep Quality Scale (SQS) (p < 0.05), but this was not significant in regression (p = 0.367). GSRS, Pleasant–Unpleasant Dimension, and Arousal–Calm Dimension were significant predictors of BFS (R = 0.599, R2 = 0.358, p < 0.01). Conclusions: This study identifies being female as a risk factor for brain fog symptoms, with women reporting higher BFS and BFSS scores. While sleep quality showed a negative correlation with brain fog symptoms, this relationship was not significant in the regression model, suggesting that other factors, such as mood and gastrointestinal symptoms, may play a more dominant role. However, adherence to the MIND diet showed no significant relationship with brain fog symptoms. These findings suggest that addressing mood and gastrointestinal health may be key to managing brain fog in long COVID. Full article
(This article belongs to the Section Epidemiology & Public Health)
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16 pages, 389 KiB  
Article
Adiponectin C1Q and Collagen Domain Containing rs266729, Cyclin-Dependent Kinase Inhibitor 2A and 2B rs10811661, and Signal Sequence Receptor Subunit 1 rs9505118 Polymorphisms and Their Association with Gestational Diabetes Mellitus: A Case-Control Study in a Romanian Population
by Mihai Muntean, Claudiu Mărginean, Elena Silvia Bernad, Claudia Bănescu, Victoria Nyulas, Irina Elena Muntean and Vladut Săsăran
Int. J. Mol. Sci. 2025, 26(4), 1654; https://doi.org/10.3390/ijms26041654 (registering DOI) - 14 Feb 2025
Viewed by 187
Abstract
Gestational diabetes mellitus (GDM) and type 2 diabetes mellitus (T2DM) are public health concerns worldwide. These two diseases share the same pathophysiological and genetic similarities. This study aimed to investigate the T2DM known single nucleotide polymorphisms (SNPs) of the adiponectin C1Q and collagen [...] Read more.
Gestational diabetes mellitus (GDM) and type 2 diabetes mellitus (T2DM) are public health concerns worldwide. These two diseases share the same pathophysiological and genetic similarities. This study aimed to investigate the T2DM known single nucleotide polymorphisms (SNPs) of the adiponectin C1Q and collagen domain containing (ADIPOQ), cyclin-dependent kinase inhibitor 2A and 2B (CDKN2A/2B), and signal sequence receptor subunit 1 (SSR1) genes in a cohort of Romanian GDM pregnant women and perinatal outcomes. DNA was isolated from the peripheral blood of 213 pregnant women with (n = 71) or without (n = 142) GDM. Afterward, ADIPOQ (rs266729), CDKN2A/2B (rs10811661), and SSR1 (rs9505118) gene polymorphisms were genotyped using TaqMan Real-Time PCR analysis. Women with GDM had a higher pre-pregnancy body mass index (BMI) (p < 0.0001), higher BMI (p < 0.0001), higher insulin resistance homeostatic model assessment (IR-HOMA) (p = 0.0002), higher insulin levels (p = 0.003), and lower adiponectin levels (p = 0.004) at birth compared to pregnant women with normoglycemia. GDM pregnant women had gestational hypertension (GH) more frequently during pregnancy (p < 0.0001), perineal lacerations more frequently during vaginal birth (p = 0.03), and more macrosomic newborns (p < 0.0001) than pregnant women from the control group. We did not find an association under any model (allelic, genotypic, dominant, or recessive) of ADIPOQ rs266729, CDKN2A/2B rs10811661, and SSR1 rs9505118 polymorphisms and GDM. In correlation analysis, we found a weak positive correlation (r = 0.24) between the dominant model GG + CG vs. CC of rs266729 and labor induction failure. In the dominant model TT vs. CC + CT of rs10811661, we found a weak negative correlation between this model and perineal lacerations. Our results suggest that the ADIPOQ rs266729, the CDKN2A/2B rs10811661, and the SSR1 rs9505118 gene polymorphisms are not associated with GDM in a cohort of Romanian pregnant women. Full article
(This article belongs to the Special Issue Molecular Therapeutics for Diabetes and Related Complications)
24 pages, 20331 KiB  
Article
Population Dynamics of the Widespread Alien Decapod Species, Brown Shrimp (Penaeus aztecus), in the Mediterranean Sea
by Mehmet Cengiz Deval and Tomris Deniz
Animals 2025, 15(4), 561; https://doi.org/10.3390/ani15040561 - 14 Feb 2025
Viewed by 187
Abstract
This study investigated the population dynamics, growth, reproduction, and parasitism of Penaeus aztecus over a 27-month period in Antalya Bay (Eastern Mediterranean). P. aztecus was the most abundant shrimp species, comprising 53.4% of the collected shrimp specimens. Abundance varied seasonally, with peak densities [...] Read more.
This study investigated the population dynamics, growth, reproduction, and parasitism of Penaeus aztecus over a 27-month period in Antalya Bay (Eastern Mediterranean). P. aztecus was the most abundant shrimp species, comprising 53.4% of the collected shrimp specimens. Abundance varied seasonally, with peak densities in summer. Males had a smaller mean carapace length (CL) of 25.8 mm compared to females at 30.2 mm. Females dominated larger size classes, with all individuals ≥ 46 mm CL being female. The sex ratio was balanced at 1:1, with no seasonal variations. Spawning occurred year-round, peaking in June, late summer, and November. Females displayed four ovarian stages, with the first mature size (FMS) at 36 mm CL. Parasitism by Epipenaeon ingens reduced the density of mature females, with 42% of potential spawners failing to develop gonads. The prevalence of parasitism showed seasonal variation and was inversely correlated with sea surface temperature (SST). Marine recruitment occurred from June to November, with a peak between July and September. Growth analysis revealed faster rates in females, while males reached a smaller maximum size. This study also identified inefficiencies in gear selectivity, with many juvenile shrimp (below recruitment size) being retained. Trawl efficiency improved with the use of turtle excluder devices (TEDs), which reduced bycatch of nontarget species, such as loggerhead turtles and cartilaginous fishes. The instantaneous total mortality rate (Z) ranged from 0.658 to 0.026 month⁻1 for male shrimp and from 1.00 to 0.014 month⁻1 for female shrimp, with survival sharply declining after recruitment, leaving only about 3.6% of individuals surviving beyond 10 months. Full article
(This article belongs to the Section Ecology and Conservation)
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21 pages, 7264 KiB  
Article
Field Monitoring and Numerical Analysis of the Effect of Air Temperature and Water Load on the Static Behavior of a Tied-Arch Aqueduct
by Xiaobin Lu, Yang Li, Xiulin Li and Meng Li
Appl. Sci. 2025, 15(4), 2030; https://doi.org/10.3390/app15042030 - 14 Feb 2025
Viewed by 210
Abstract
This study presents part of a pilot work for the structural health monitoring of a large tied-arch reinforced concrete aqueduct in eastern China. Based on field-monitored data for over a year, it mainly focuses on the effect of air temperature and water load [...] Read more.
This study presents part of a pilot work for the structural health monitoring of a large tied-arch reinforced concrete aqueduct in eastern China. Based on field-monitored data for over a year, it mainly focuses on the effect of air temperature and water load variations on the static behavior of a typical span of the aqueduct through field monitoring and 3D FE model analysis. It is found that the longitudinal deformation of the composite tied-arch shows a good linear relationship with the air temperature during the non-operation period and also has a good bilinear correlation with the air temperature and water level during operation. However, isolation of the air temperature effect from the second bilinear correlation using the first linear relationship results in a poor correlation between the longitudinal deformation and water level due to the dominance of the temperature effect. Therefore, it is recommended to use the bilinear regression to predict the longitudinal deformation of the tied-arch during operation. The vertical deformation of the tied-arch is insignificantly affected by air temperature, whereas it shows a fair bilinear correlation with the air temperature and water level during operation, which can be used to provide a reasonable estimation of the vertical deformation of the tied-arch. The strain measurements of the tied-arch using vibrating-string gauges are more complicated due to the notable influence of the ambient temperature and solar radiation, but the relatively consistent bilinear regression of the strains versus the air temperature and water level can still give fair predictions for the strains of the bottom tension rods during operation. The 3D FE model can provide a fair estimation for the vertical deformation of the tied-arch under water load, but its predictions for longitudinal deformation and strains are less satisfactory when compared to monitored data excluding temperature effects. Full article
17 pages, 2321 KiB  
Article
Insights of Density Functional Theory into JP-10 Tetrahydrodicyclopentadiene Fuel Properties
by Dilip Rijal, Vladislav Vasilyev, Yunxia Yang and Feng Wang
Processes 2025, 13(2), 543; https://doi.org/10.3390/pr13020543 - 14 Feb 2025
Viewed by 229
Abstract
This study aims to investigate the structural, spectroscopic, and electronic properties of the synthetic missile fuel exo- and endo-tetrahydrodicyclopentadiene (THDCPD, JP-10) using density functional theory (DFT). It is to understand the dominance of the liquid exo-isomer (96%) of the jet fuel from the [...] Read more.
This study aims to investigate the structural, spectroscopic, and electronic properties of the synthetic missile fuel exo- and endo-tetrahydrodicyclopentadiene (THDCPD, JP-10) using density functional theory (DFT). It is to understand the dominance of the liquid exo-isomer (96%) of the jet fuel from the subtle differences between the isomers. The present DFT calculations reveal that the exo-isomer is 15.51 kJ/mol more stable than the endo-isomer, attributed to the flipping of the triangular ΔC8-C10-C9 ring in its norbornane skeleton. Calculated nuclear magnetic resonance (13C-NMR) and infrared (IR) spectra, validated by experimental data, reveal larger chemical shifts for junction carbons (C1/C2 and C3/C4) due to reduced electron shielding and show distinct vibrational patterns. Charge analysis indicates that all carbon atoms are negatively charged except for the C1/C2 carbons which are positively charged in both isomers. While overall IR spectra of the isomers appear similar, bands near 3000 cm1 correspond to distinctly different vibrational modes. The exo-isomer’s electronic structure features a more delocalized HOMO and a larger HOMO-LUMO gap (7.63 eV) than the endo-isomer (7.37 eV). All such differences contribute to the properties of exo-THDCPD and, therefore, why the exo-isomer dominates JP-10 fuel. Full article
(This article belongs to the Special Issue Novel Fuel Technologies: Synthesis, Production and Property Analysis)
15 pages, 5903 KiB  
Article
Insights into the Stearoyl-Acyl Carrier Protein Desaturase (SAD) Family in Tigernut (Cyperus esculentus L.), an Oil-Bearing Tuber Plant
by Zhi Zou, Xiaowen Fu, Chunqiang Li, Xiaoping Yi, Jiaquan Huang and Yongguo Zhao
Plants 2025, 14(4), 584; https://doi.org/10.3390/plants14040584 - 14 Feb 2025
Viewed by 214
Abstract
Plant oils rich in oleic acid (OA) are attracting considerable attention for their high nutritional value and significant industrial potential. Stearoyl-acyl carrier protein desaturases (SADs) are a class of soluble desaturases that play a key role in OA accumulation in plants. In this [...] Read more.
Plant oils rich in oleic acid (OA) are attracting considerable attention for their high nutritional value and significant industrial potential. Stearoyl-acyl carrier protein desaturases (SADs) are a class of soluble desaturases that play a key role in OA accumulation in plants. In this study, the first genome-wide characterization of the SAD gene family was conducted in tigernut (Cyperus esculentus L. var. sativus Baeck., Cyperaceae), an oil-rich tuber plant typical for its high OA content. Six SAD genes identified from the tigernut genome are comparative to seven reported in two model plants Arabidopsis thaliana and Oryza sativa, but relatively more than four were found in most Cyperaceae species examined in this study. A comparison of 161 SAD genes from 29 representative plant species reveals the monogenic origin and lineage-specific family evolution in Poales. C. esculentus SAD genes (CeSADs) were shown to constitute two evolutionary groups (i.e., FAB2 and AAD) and four out of 12 orthogroups identified in this study, i.e., FAB2a, FAB2b, FAB2c, and AAD1. Whereas FAB2a and AAD1 are widely distributed, FAB2b and FAB2c are specific to Cyperaceae, which may arise from FAB2a via tandem and dispersed duplications, respectively. Though FAB2d and AAD2 are also broadly present in monocots, they are more likely to be lost in the Cyperaceae ancestor sometime after the split with its close family, Juncaceae. In tigernut, FAB2a appears to have undergone species-specific expansion via tandem duplication. Frequent structural variation and apparent expression divergence were also observed. Though FAB2a and AAD1 usually feature two and one intron, respectively, gain of certain introns was observed in CeSAD genes, all of which have three introns. Despite recent expansion of the FAB2 group, CeFAB2-1 has evolved into the dominant member that was highly and constitutively expressed in all tested organs. Moreover, CeFAB2-1, CeAAD1, as well as CeFAB2-5 have evolved to be predominantly expressed in tubers and thus contribute to high OA accumulation. These findings highlight lineage-specific evolution of the SAD family and putative roles of CeSAD genes in tuber oil accumulation, which facilitate further functional analysis and genetic improvement in tigernut and other species. Full article
(This article belongs to the Special Issue Advances in Oil Regulation in Seeds and Vegetative Tissues)
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21 pages, 1656 KiB  
Article
Cost-Effectiveness of Introducing Nuvaxovid to COVID-19 Vaccination in the United Kingdom: A Dynamic Transmission Model
by Clive Pritchard, Lucie Kutikova, Richard Pitman, Kira Zhi Hua Lai, Hadi Beyhaghi, IIana Gibbons, Amanda Erbe, Marija Živković-Gojović, Catherine Cosgrove, Mark Sculpher and David Salisbury
Vaccines 2025, 13(2), 187; https://doi.org/10.3390/vaccines13020187 - 14 Feb 2025
Viewed by 291
Abstract
Background/Objectives: Vaccination against SARS-CoV-2 remains a key measure to control COVID-19. Nuvaxovid, a recombinant Matrix-M–adjuvanted protein-based vaccine, showed similar efficacy to mRNA vaccines in clinical trials and real-world studies, with lower rates of reactogenicity. Methods: To support decision making on UK vaccine selection, [...] Read more.
Background/Objectives: Vaccination against SARS-CoV-2 remains a key measure to control COVID-19. Nuvaxovid, a recombinant Matrix-M–adjuvanted protein-based vaccine, showed similar efficacy to mRNA vaccines in clinical trials and real-world studies, with lower rates of reactogenicity. Methods: To support decision making on UK vaccine selection, a population-based compartmental dynamic transmission model with a cost-utility component was developed to evaluate the cost-effectiveness of Nuvaxovid compared with mRNA vaccines from a UK National Health Service perspective. The model was calibrated to official epidemiology statistics for mortality, incidence, and hospitalisation. Scenario and sensitivity analyses were conducted. Results: In the probabilistic base case, a Nuvaxovid-only strategy provided total incremental cost savings of GBP 1,338,323 and 1558 additional quality-adjusted life years (QALYs) compared with an mRNA-only vaccination strategy. Cost savings were driven by reduced cold chain-related operational costs and vaccine wastage, while QALY gains were driven by potential differences in vaccine tolerability. Probabilistic sensitivity analysis indicated an approximately 70% probability of cost-effectiveness with Nuvaxovid-only versus mRNA-only vaccination across most cost-effectiveness thresholds (up to GBP 300,000/QALY gained). Conclusions: Nuvaxovid remained dominant over mRNA vaccines in scenario analyses assessing vaccine efficacy waning, Nuvaxovid market shares, and the vaccinated population. Full article
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16 pages, 3030 KiB  
Article
Shifts in Soil Fungal Community and Trophic Modes During Mangrove Ecosystem Restoration
by Xiaofang Shi, Shengyao Zhou, Lanzi Xu, Rajapakshalage Thashikala Nethmini, Yu Zhang, Liangliang Huang, Ke Dong, Huaxian Zhao and Lianghao Pan
J. Fungi 2025, 11(2), 146; https://doi.org/10.3390/jof11020146 - 14 Feb 2025
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Abstract
Mangrove ecosystems are valuable coastal ecosystems; however, studies on the diversity and functional features of their soil fungal communities during restoration are limited. In this study, we examined fungal diversity and trophic modes across mudflat, young mangrove, and mature mangrove stages. We found [...] Read more.
Mangrove ecosystems are valuable coastal ecosystems; however, studies on the diversity and functional features of their soil fungal communities during restoration are limited. In this study, we examined fungal diversity and trophic modes across mudflat, young mangrove, and mature mangrove stages. We found that Ascomycota and Basidiomycota were the dominant phyla, with saprotrophs as the most abundant trophic mode. The abundance of the major phyla and trophic modes significantly varied across restoration stages. Although fungal alpha (α)-diversity remained stable among the stages, beta (β)-diversity showed significant differentiation. Spearman’s analysis and partial Mantel tests revealed that total nitrogen and inorganic phosphorus significantly influenced the fungal α-diversity, whereas temperature and pH primarily shaped the fungal β-diversity. Total nitrogen and carbon were key factors affecting the trophic mode α-diversity, whereas total phosphorus and inorganic phosphorus were the main drivers of the trophic mode β-diversity. Variation partitioning analysis confirmed that nutrients, rather than soil properties, were the primary factors shaping fungal communities and trophic modes. Random forest analysis identified key bioindicators, including species such as Paraphyton cookei, and trophic modes such as saprotrophs, both of which were strongly influenced by soil carbon. These findings advance our understanding of fungal ecology in mangrove restoration. Full article
(This article belongs to the Special Issue Fungal Communities in Various Environments)
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19 pages, 1079 KiB  
Article
Variation in Linseed Oil Composition: Impact of Cultivar, Cultivation System, and Year of Cultivation
by Grzegorz Dąbrowski, Małgorzata Tańska, Sylwester Czaplicki, Tadeusz Sadowski, Bogumił Rychcik, Marta K. Kostrzewska, Zofia Antoszkiewicz and Iwona Konopka
Molecules 2025, 30(4), 875; https://doi.org/10.3390/molecules30040875 - 14 Feb 2025
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Abstract
Linseed oil quality depends on cultivar and agriculture practice/conditions. In this study, we analyzed the effect of the main variable, which was continuous cropping system vs. crop rotation system. The aim of this study was to compare the oil content and composition (fatty [...] Read more.
Linseed oil quality depends on cultivar and agriculture practice/conditions. In this study, we analyzed the effect of the main variable, which was continuous cropping system vs. crop rotation system. The aim of this study was to compare the oil content and composition (fatty acid composition and sterol, tocochromanol, carotenoid, and phenolic contents) of two fiber-type linseed cultivars (Modran and Nike). All measurements were performed according to standard chromatographic/spectrophotometric procedures typical for oil analysis. The factors that affected the crop yield and oil quality of the tested cultivars included the cultivation system (crop rotation or continuous cropping), plant protection level (herbicide application or no herbicide application), and year of cultivation (2018 and 2019). The cultivars exhibited high oil content (35.4–42.7%) with substantial omega-3 fatty acid (α-linolenic acid) content (53.6–62.2% of total fatty acids). The primary bioactive components in all the oils were sterols (dominated by β-sitosterol), with their content reaching 5079 mg/kg, and tocochromanols, with their content reaching 679 mg/kg (dominated by γ-tocopherol), which was influenced by all of the studied factors. In contrast, carotenoids and phenolic compounds constituted a smaller fraction of the oils (up to 17 and 159 mg/kg, respectively), but their content was the most variable and was strongly dependent on the cultivation year and cultivation system (CV 21 and 37%, respectively). In summary, the results of the current study showed that continuous linseed cropping resulted in increased levels of carotenoids, phenolic compounds, and γ-tocopherol in oil. Our findings indicated that the oil content was mostly affected by the cultivar and cultivation year, while the α-linolenic acid content in the oil was also affected by plant protection practices. These findings may be helpful in predicting the composition of obtained linseed oil and applying proper cultivation technology, depending on the purpose of oil usage. Full article
(This article belongs to the Special Issue New Insight into Edible Oil: From Food Chemistry to Health Benefits)
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21 pages, 4477 KiB  
Article
Diversity of Arbuscular Mycorrhiza Fungi in the Arid Desert Ecosystems of Kuwait: Detection and Identification from Perennial Native Grass Roots
by Tareq A. Madouh, Majda K. Suleiman, Ali. M. Quoreshi and Merlin K. Davidson
Diversity 2025, 17(2), 130; https://doi.org/10.3390/d17020130 - 14 Feb 2025
Viewed by 187
Abstract
Arbuscular Mycorrhizal Fungi (AMF) play a key role in enduring stresses in desert ecosystems, as they enhance the moisture and nutrient supply to desert plants. An investigation was carried out to detect the existence of AMF in the root regions of five perennial [...] Read more.
Arbuscular Mycorrhizal Fungi (AMF) play a key role in enduring stresses in desert ecosystems, as they enhance the moisture and nutrient supply to desert plants. An investigation was carried out to detect the existence of AMF in the root regions of five perennial native desert grasses of Kuwait (Cenchrus ciliaris L., Cenchrus setigerus Vahl, Lasiurus scindicus Henrard, Pennisetum divisum (Forssk.) Henr., and Panicum turgidum Forssk.) in comparison with a non-native grass (Panicum virgatum L.). The native plants, C. setigerus and P. divisum had the highest colonization (100%) with vesicles, followed by P. turgidum (90%). The colonization of arbuscules was highest in the non-native grass, P. virgatum (60%), followed by C. setigerus (50%). Phylogenetic analysis for molecular identification to determine the genetic diversity of the AMF community in association with the native plant roots of the two dominant desert species, i.e., L. scindicus and P. turgidum, against P. virgatum, revealed a rich diversity. The AMF, Claroideoglomus lamellosum, and Rhizophagus sp. were identified from L. scindicus roots, Rhizophagus iranicus from P. turgidum roots, and Claroideoglomus lamellosum, from the non-native grass, P. virgatum, with almost 98–100% sequence similarity, indicating a significant difference between the mycorrhizal species in the nativity of grasses. This research confirms the diversity of AMF associated with native desert plants and emphasizes their symbiosis and host specificity. Thus, this study provides insight into AMF community structures, functions, and profiling, allowing us to understand their ecological and economic impacts, and ultimately implement strategies for sustainable biodiversity, productivity, and ecosystem management. Full article
(This article belongs to the Special Issue Biodiversity and Ecology of Soil Fungal Communities)
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