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Series GSE180236 Query DataSets for GSE180236
Status Public on Jul 14, 2022
Title ATAC-Seq for control and Huntington's disease mouse models for neun+ and neun- cells
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Data collected from HD and control mouse models for multiple brain regions (striatum vs. cortex), time points (8 weeks vs. 12 weeks), and cell types (NeuN+ vs. Neun-)
 
Overall design ATAC-Seq profiles to compare HD and control mouse brains for the conditions described above
 
Contributor(s) P. Gold M, Adam M, Fraenkel E
Citation(s) 36543778
Submission date Jul 16, 2021
Last update date Jan 11, 2023
Contact name Maxwell Gold
Organization name MIT
Street address 21 Ames St
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (43)
GSM5456443 WT.1+, 190627FraA_D19-6998
GSM5456444 WT.1-, 190627FraA_D19-7004
GSM5456445 R6/2.1+, 190627FraA_D19-7001
Relations
BioProject PRJNA747164
SRA SRP328658

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE180236_RAW.tar 35.1 Gb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
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