graph laplacian
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A better understanding of the various patterns in the coronavirus disease 2019 (COVID-19) spread in different parts of the world is crucial to its prevention and control. Motivated by the celebrated GLEaM model (Balcan et al., 2010 [1]), this paper proposes a stochastic dynamic model to depict the evolution of COVID-19. The model allows spatial and temporal heterogeneity of transmission parameters and involves transportation between regions. Based on the proposed model, this paper also designs a two-step procedure for parameter inference, which utilizes the correlation between regions through a prior distribution that imposes graph Laplacian regularization on transmission parameters. Experiments on simulated data and real-world data in China and Europe indicate that the proposed model achieves higher accuracy in predicting the newly confirmed cases than baseline models.

Abstract Graph neural networks (GNNs) extend the functionality of traditional neural networks to graph-structured data. Similar to CNNs, an optimized design of graph convolution and pooling is key to success. Borrowing ideas from physics, we propose path integral-based GNNs (PAN) for classification and regression tasks on graphs. Specifically, we consider a convolution operation that involves every path linking the message sender and receiver with learnable weights depending on the path length, which corresponds to the maximal entropy random walk. It generalizes the graph Laplacian to a new transition matrix that we call the maximal entropy transition (MET) matrix derived from a path integral formalism. Importantly, the diagonal entries of the MET matrix are directly related to the subgraph centrality, thus leading to a natural and adaptive pooling mechanism. PAN provides a versatile framework that can be tailored for different graph data with varying sizes and structures. We can view most existing GNN architectures as special cases of PAN. Experimental results show that PAN achieves state-of-the-art performance on various graph classification/regression tasks, including a new benchmark dataset from statistical mechanics that we propose to boost applications of GNN in physical sciences.

AbstractNonlinear reformulations of the spectral clustering method have gained a lot of recent attention due to their increased numerical benefits and their solid mathematical background. We present a novel direct multiway spectral clustering algorithm in the p-norm, for $$p\in (1,2]$$ p ∈ ( 1 , 2 ] . The problem of computing multiple eigenvectors of the graph p-Laplacian, a nonlinear generalization of the standard graph Laplacian, is recasted as an unconstrained minimization problem on a Grassmann manifold. The value of p is reduced in a pseudocontinuous manner, promoting sparser solution vectors that correspond to optimal graph cuts as p approaches one. Monitoring the monotonic decrease of the balanced graph cuts guarantees that we obtain the best available solution from the p-levels considered. We demonstrate the effectiveness and accuracy of our algorithm in various artificial test-cases. Our numerical examples and comparative results with various state-of-the-art clustering methods indicate that the proposed method obtains high quality clusters both in terms of balanced graph cut metrics and in terms of the accuracy of the labelling assignment. Furthermore, we conduct studies for the classification of facial images and handwritten characters to demonstrate the applicability in real-world datasets.

Sparse unmixing (SU) aims to express the observed image signatures as a linear combination of pure spectra known a priori and has become a very popular technique with promising results in analyzing hyperspectral images (HSI) over the past ten years. In SU, utilizing the spatial-contextual information allows for more realistic abundance estimation. To make full use of the spatial-spectral information, in this letter, we propose a pointwise mutual information (PMI) based graph Laplacian regularization for SU. Specifically, we construct the affinity matrices via PMI by modeling the association between neighboring image features through a statistical framework, and then we use them in the graph Laplacian regularizer. We also adopt a double reweighted $\ell_{1}$ norm minimization scheme to promote the sparsity of fractional abundances. Experimental results on simulated and real data sets prove the effectiveness of the proposed method and its superiority over competing algorithms in the literature.

Sparse unmixing (SU) aims to express the observed image signatures as a linear combination of pure spectra known a priori and has become a very popular technique with promising results in analyzing hyperspectral images (HSI) over the past ten years. In SU, utilizing the spatial-contextual information allows for more realistic abundance estimation. To make full use of the spatial-spectral information, in this letter, we propose a pointwise mutual information (PMI) based graph Laplacian regularization for SU. Specifically, we construct the affinity matrices via PMI by modeling the association between neighboring image features through a statistical framework, and then we use them in the graph Laplacian regularizer. We also adopt a double reweighted $\ell_{1}$ norm minimization scheme to promote the sparsity of fractional abundances. Experimental results on simulated and real data sets prove the effectiveness of the proposed method and its superiority over competing algorithms in the literature.

Spatial autocorrelation, of which Geary’s c has traditionally been a popular measure, is fundamental to spatial science. This paper provides a new perspective on Geary’s c. We discuss this using concepts from spectral graph theory/linear algebraic graph theory. More precisely, we provide three types of representations for it: (a) graph Laplacian representation, (b) graph Fourier transform representation, and (c) Pearson’s correlation coefficient representation. Subsequently, we illustrate that the spatial autocorrelation measured by Geary’s c is positive (resp. negative) if spatially smoother (resp. less smooth) graph Laplacian eigenvectors are dominant. Finally, based on our analysis, we provide a recommendation for applied studies.