.

2009-2010

- (G-Periodic)
(Kalzium)
(Chemtool)
(Rasmol)

Module Prepared by:

Suresh Babu.K, SPO, Thiruvananthapuram
Santhosh.V, MTC, Cherthala
Sakthidharan.P.P, MT, Kannur
Rajesh.K.O, MTC, Kuttanadu

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1.

9.30 - 10.00

10.00 - 10.30

10.30 - 11.15

- -

11.30 - 12.00

12.00 - 1.00

2.00 - 3.30

- Template

(Chemtool)

3.30 - 4.00

-
,

4.00 - 4.30
2

9.30 - 4.30

- Kalzium

10.00 - 1.00

-
Overview

Time line
State of Matter
-

Glossary, Tools

2.00 - 4.00

- Rasmol
5




Ras,p; cp,,amd
Installation
4.00 - 4.30

-
-


9.30 to 10.00

10.00 to 10.30

10.30 to
- .

-.
Application --> Education --> G-Periodic
.
.

.

.

Chemtool

.
.
IT@Schol Linux
.
Application--> Educaiton --> Chentool
Chentool .
Chentool

Chemtool
Menubar,

Drawing

Tools,

Canvas

Chemtool .
Drawing Tool- 4
.


.
. Bonds
, .

Chemtool

Chemtool _ Benzene

10

Chemtool _ Benzene

current text Text

.

Chemtool _ Benzene
11

 .
.
Methane
Ethane
Ethanol
Cyclopropane
Cyclobutane
Cyclohexane
......................
......................
......................

Templates
Chemtool- Template
Tool-->Templates--> Template
. .
Template- .
Naphthalene
Cytosine
Maltose
...............
...............
...............
12

Chemtool

Current Text font T/T Text box-
. (Font size )
Canvas- . Subscript- underscore, superscript- (rise
to) .

.
Select pen color .

.
Mark object .
13


move marked object
.

Resize marked objects
.


. Tool- Calculator formula right .
.
.

right click .

14

Kalzium

Kalzium.

, , , ,

.
Kalzium -

Application --> Education --> Kalzium
OR
Alt + F2 Kalzium Enter .

- 1
Kalzium sidebar, tableview, standard menubar, statusbar
.
15


- 2
Kalzium

sidebar,

tooltip,

legend

screeshot Kalzium
paste .

View --> Hide sidebar
Sidebar, tooltip, legend
.
- 3

, .
View --> Look --> Gradient --> Melting point.

16


- 4
Table View- , ,
.
View --> Look --> Shrowgroup

- 5
IUPAC,
CAS (Chemical Abstract Service), Old IUPAC
.
17

View --> Look --> Shrowgroup

Kalzium-
.
Overview
Sidebar-

Overview-

table

view-

Overview

- 6

Overview

, , , ,
, ,
.
Kalzium -
Kalzium Sidebar-
Calculator-

textbox-

18

textbox-

calc

H2SO4
calc .

- 7
HNO3

C24H42O21

C12H22O11

CH3(CH2)2 COOH

Ca3(PO4)2

Na3AlF6

.
Timeline

timeline . sidebar- timeline-

year slider .
Slider table view- .

19


- 8
1800

Screenshot

.

3630K
?

Kalzium . Sidebar- State of matter

. Temperature 3630

Enter

Table

view-

. Slider
.

20


- 9
2000K- Kalzium
Scree Shot .

H2

I2

--->

HI

, ! ,
Cu + HNO3 ---> CU(NO3)2 + NO + H2O

Kalzium . Tools Equation solver-

Apply

''

a, b, c, d ...
. '--->' '--' '>'
.
: aCu + bHNO3 ---> cCu (NO3)2 + dNO + CH2O

21


- 10

Kalzium

Screen Shot,
.
CH4 + C2H6 + O2 + HNO3 ---> H2O + CO2 + NO2
CH3 (CH2)3 COoH + O2 ---> H2O + CO2
C24H42O21 + H2O ---> C6H12O6
Fe[2+] + MnO4[-] + H3O[+] ---> Mn[2+] + H2O + Fe[3+]

tools menu- plotdata-
Y-axis ' '

mass,

Electronegativity

. Connect points
checkbox- First element, Last element
plot .

22


- 11
3- Electro negativity, Mass, Melting point
.
Glossary and Tools
Tools

--->

Glossary

--->

Knowledge/Tools

,
. Covalent radius, Vander Waal's radius, isobar
Water Jet Pump, Mortar
.

23

Kalzium

Rasmol

Rasmol.

input

File-

. format PDB
(Protene Data Bank).
Rasmol Open
Application --> Education ---> Rasmol Molecular Graphics.Visualization.
Rasmol- (
Ras 1.jpg). Graphics or Canvas Window Command line
or terminal window

Ras.1.jpg

24

Rasmol

ethanol-

. ethanol.PDB file CD- home-

.

pdb

ftp://ftp.wwpdb.org/pub/pdb/data/ .
1. Rasmol Molecular Graphics Visualization .

Ras.2.jpg
2. Canvas window- File-->Open-->(Ras.2n) (
Ras 2.jpg)
.
3. Terminal window- (ethanol.PDB)
. ( Ras3.jpg) (Canvas window- ethane wireframe )( Ras 4.jpg)

25

 Ras.3.jpg

Ras.4.jpg
4. Ball and Stick
Canvas window- Display ---> Ball & Stick
( Ras 5.jpg)

26

 Ras.5.jpg
Ethane Ball and Stick . ( Ras 6.jpg)

Ras.6.jpg
.

27

1. x Y X
Y or scroll bar
.
2. Display
Display ---> .
3. colours --> mode
.
4. Label settings---> Pick Label
. Label .
5.

Settings ---> Pick Angle .

Settings ---> Pick distance
.
6. Exports (PPM format-)
Export -- PPM (terminal window- file name .

.
7. File save
File ---> Save as (terminal window- file name )
8. File
File ---> Close.

Display Window Back ground colour

28

Terminal window-
background < colour> command
Colour Colour name Colour code
eg: background Blue or
background (0,0,255)
Text Size
Terminal window-
Set fontsize <Size>
eg: Set fontsize 12
Fonrt stroke
Terminal window-
Set fontstroke <num>
eg: Set fontstroke 1

.
. .
:
.
Terminal window- Command
1.

Select carbon

2.

Colour blue or colour (0,0,255)

29

1.

PPM format- export .

a. Diamond, graphite, fallerine

2.

H.O

Screen shot .
3.

Methane

Carbone-

Hydrogen-

. Screen shot .
4.

Ethane screenshot
.

Rasmol Installation
1. CD- rasmol_2.7.2.1.1-5.i386.deb file home-
.
2. File- Open with "GDebi
package installer" item .
3. package installer Install Package button
.
OR
Root Terminal window- command run .
dpkg -i rasmol_2.7.2.1.1-5_i386.deb

30

Kalzium
I

II

III

Std. VIII

1.

Chapter - 5 -

Molecular Atom

2.

Chapter - 6 -

Chemical bonding

3.

Chapter - 7 -

Stability

Std. IX

1.

Chapter - 1 -

Periodic table

2.

Chapter - 2 -

Chemical bonding

3.

Chapter - 5 -

Carbob - Equation balancing

4.

Chapter - 7 -

Non-metals

5.

Chapter - 8 -

Metals

Std. X

1.

Chapter - 1 -

Language of chemistry

2.

Chapter - 2 -

Structure of atom and periodic table

3.

Chapter - 7 -

Organic compounds chemical reaction

- Equation balancing

4.

Chapter - 10

Acids - Equation balancing

***************

31