Design of Experiments PDF
Design of Experiments PDF
Design of Experiments PDF
SECOND EDITION
GALTON LABORATORY,
July 1935.
VII. CONFOUNDING
42. The Problem of Controlling Heterogeneity . II8
43. Example with 8 Treatments, Notation 121
44. Design suited to Confounding the Triple Interaction 12 3
45. Effect on Analysis of Variance 124
46. Example with 27 Treatments I27
INTRODUCTION
1. The Grounds on which Evidence is Disputed
WHEN any scientific conclusion is supposed to be
proved on experimental evidence, critics who still
refuse to accept the conclusion are accustomed to
take one of two lines of attack. They may claim
that the interpretation of the experiment is faulty,
that the results reported are not in fact those which
shpuld have been expected had the conclusion drawn
been justified, or that they might equally well have
arisen had the conclusion drawn been false. Such
criticisms of interpretation are usually treated as
falling within the domain of statistics. They are
often made by professed statisticians against the
work of others whom they regard as ignorant of or
incompetent in statistical technique; and, since the
interpretation of any considerable body of data is
likely to involve computations, it is natural enough
that questions involving the logical implications of
the results of the arithmetical processes employed,
should be relegated to the statistician. At least I
make no complaint of this convention. The statistician
cannot evade the responsibility for understanding the
processes he applies or recommends. My immediate
A
2 INTRODUCTION
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34 EXPERIMENT ON GROWTH RATE
TABLE 2
Number of negative
values. >3 1 4 = 314 <3 1 4 Total.
0 I ... ... I
I IS ... ... IS
2 94 I 10 !OS
3 26 3 3 189 455
4 302 II 1,05 2 1,3 6 5
5 138 12 2,853 3,003
6 22 1 4,982 5,005
7 or more ... . .. 22,81 9 22,8 19
~~~~~~~$~g~~ ~
N ~l ~~ :....
000 Q'\
00 '"C'l ~ 0 ~ 00 t-
Q\ Q\ r--.oo t-
LI') i"""I I-t
~o
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~ 00 OJ) ' " ' " ('l 00 ('l "T ('l t-- r-- -;T
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.................. OOLl')O\tr)LI')V\LI')<o:::ta:>
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---
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8."S'g-~S'~S'S'S'2:'2:'~
'-,-' ' - , - ' ' - , - ' ' - , - ' ' - , - '
I-( N f1")-.::tlf)\O
REFERENCES 77
TABLE S
6x6 square. sxs square.
Rows 5 S-I
Columns 5 S-I
Treatments 5 S-I
Error 20 (S- I)(S-2)
Total 35 S2-1
aA+bB+cC+dD+eE+Fb-Mm.
FAULTY TREATMENTS
A B C D E
E A B C D
D E A B C
C D E A B
B C D E A
A B C D E
D E A B C
B C D E A
E A B C D
C D E A B
6 6 4 7 8 4 2 8 7 5 I 2 53 3 I
666 5 8 3 7 2 5 4 I 7 34 1 834 172 25 8
6 6 2 I I 3 3 5 8 2 5 7 4 8 7 4
7 7 3 6 2 3 8 2 6 I 5 8 I 4 4 5
777 124 681 35 6 435 243 5 6 8 8 I 2
7 7 8 5 5 4 4 I 2 8 I 6 3 2 6 3
8 8 5 2 6 5 7 6 2 4 3 7 4 I I 3
888 4 6 I 274 53 2 153 6 I 5 3 2 7 746
8 8 7 3 3 I I 4 6 7 4 2 5 6 2 5
E B F A C D
633 527 65 2 390 504 4I6 3122
- - - --- - - -
B C D E F A
489 4754I5 488 57 1 282 27 20
- - -- - - - - -- - - --- - - -
A E C B D F
384 481 483 422 334 646 275 0
---
F D E C A B
620 448 505 439 323 384 27 I 9
- - -- - -
D A B F E C
452 43 2 4 II 6I7 594 466 2972
- - -- -
C F A D B E
500 505 259 366 326 420
Total 95
ANALYSIS OF VARIANCE 109
TABLE 12
Degrees of
Freedom.
Blocks 5
Treatments 15
Error 75
Total 95
TABLE 13
Degrees of
Freedom.
Single factors. . . 6
Interaction between :2 factors 15
" " 3
4
20}
I~ Error 42
5
6
"
The 6 primary effects of the individual factors
will each be determined, as we have seen, by the
whole weight of the evidence o 64 trials. To test the
significance of the differences observed, we may use
the 42 degrees of freedom for interactions involving
more than 2 factors to supply an estimate of error;
that is, an estimate of the variance, due to error,
of a single trial. The same test may be applied to
any of the 15 interactions between pairs of factors
which may seem to be possibly significant. If none
of these are very important compared with the
average of the remainder we have an empirical
confirmation of the supposition upon which the
experiment was designed, that the 6 primary factors
HIDDEN REPLICA'fION I J7
CONFOUNDING
42. The Problem of Controlling Heterogeneity
I T has been shown in the last chapter that great
advantages may be obtained by testing experimentally
an aggregate of variants, systematically arranged on
the factorial scheme. The illustrations have shown
that such aggregates may be very numerous. When,
in Chapters II 1. and IV., the advantages of pairing,
or of grouping, the material in relatively homogeneous
blocks was discussed, it was seen that the precision
attainable by a given amount of experimentation was
liable to be reduced, when the number of comparisons
to be made was large, by reason of the increased
heterogeneity, which must in practice then be per-
mitted, among the tests in the same group.
In agricultural experimentation this effect ex-
presses itself very simply in the increased size of the
blocks of land, each of which is to contain plots
representative of all the different combinations to be
tested. Thus if there are 48 different combinations,
each block will have to be nearly an acre in extent,
and it is common experience that within so large an
area considerably greater soil heterogeneity will be
found, than would be the case if the blocks could be
reduced in size to a quarter of an acre or less. The
same consideration applies to experimentation of all
CONTROLLING HETEROGENEITY
. 119
kinds. If large quantities of material are needed, or
large numbers of laboratory animals, these will almost
invariably be more heterogeneous than smaller lots
could be made to be. In like manner, extensive
compilations of statistical material often show evidence
of such heterogeneity among the several parts which
have been assembled, and are seriously injured in
value, if this heterogeneity is overlooked in making
the compilation.
In many fields of experimentation quantitative
knowledge is lacking as to the degree of heterogeneity
to be anticipated in batches of material of different
size, or dra'wn from more or less diverse sources.
This is a drawback to precise planning, which
increased care in experimental design will doubtless
steadily remove. While, therefore, greater hetero-
geneity is always, on general principles, to be
anticipated, when the scope of an experimental
investigation is to be enlarged, this feature will often
do but little to annul the advantages discussed in the
last chapter. Nevertheless, the means by which such
heterogeneity can be controlled are widely applicable,
and will generally give a further increase in pre-
CISIon. In agricultural field trials, where the study
of heterogeneity has been itself the object of a
great deal of deliberate investigation, it is certain
that the further advantages to be gained are very
considera ble.
In the last chapter, we have seen that a factorially
arranged experiment supplies information on a large
number of experimental comparisons. Some of these,
120 CONFOUNDING
.'
such as the effects of single factors, will always be of
interest. I t is seldom, too, that we should be willing
to forego knowledge of any interactions which may
exist between pairs of these factors. But, in the case
of interactions involving 3 factors or more, the
position is often somewhat different. Such inter-
actions may with reason be deemed of little experi-
mental value, either because the experimenter is
confident that they are quantitatively unimportant,
or because, if they were known to exist, there would
be no immediate prospect of the fact being utilised.
In such cases we may usefully adopt the artifice
known as "confounding." This consists of increasing
the number of blocks, or groups of relatively homo-
geneous material, beyond the number of replications
in "the experiment, so that each replication occupies
two or more blocks; and, at the same time, arranging
that the experimental contrasts between the different
blocks within each replication shall be contrasts
between unimportant interactions, the study of which
the experimenter is willing to sacrifice, for the sake
of increasing the precision of the remaining contrasts,
in which he is specially interested. To do this it
must be possible to evaluate these remaining contrasts
solely by comparisons within the blocks. It is not
necessary, however, that comparisons within anyone
block should provide the required contrast, but only
that it should be possible to build this up by com-
parisons within all the blocks of a replication.
NOTATION 121
(e) (be)
(abc) (ab)
(a) ( 1)
(b) (ae)
\
ANALYSIS OF VARIANCE 12 5
Total 39
I 2 3
2 3
3 2
Total 26
ORTHOGONAL SETS 13 1
2 3 3 2 3 2 2 3
3 I 2 2 I 3 23 1 3 21
Total
CHOICE OF COMPONENTS 135
(~ 3 ~) _ (~ ~ ~) + (; 2 ;) ~ (; ; ;)
\ I 2 3, 3 2 1 3 2 3 2 I
+(; ~ ;)_(;
12 3
2
23
;)+(~ ~ ~)_(~ 3 ~)
I 23 321
is equal to 3 N1K1P 1
With the aid of this example the reader will do
well to consider how the data of the experiment
should be combined to obtain other types of inter-
action, such as those denoted by N 1K 1P 2' N 2 K 2 P 1, and
N 2 K2 P 2, and to satisfy himself that these can each be
derived by a similar choice of appropriate compounds
from the data provided by the partially confounded
experiment.
471. Practical Exercises
I. Show that, if each factor is tested at two levels,
blocks of eight will suffice for testing 4, 5, 6 or
7 factors simultaneously, without confounding any
interaction involving only two factors.
2. In a linkage test with eight genetic factors,
show that a selection of 8 out of the 128 possible
types of multiple heterozygotes can be made so that
each of the 28 pairs of factors is in "coupling" in 4,
and in " repulsion" in 4.
3. Using a completely orthogonaIised 7 X 7 square,
show that with eight replications a set of 49 varieties
may be tested in blocks of 7, so that every possible
pair of varieties occurs once only in the same block.
4. Show that the same may be done, in eight
replications, with 57 varieties in blocks of 8, and
that it cannot be done, in seven replications, with
43 varieties in blocks of 7.
14 2 CONFOUNDING
c D
FIG. 2.-Arrangement of treatments and yields of grain in experiment
on quantity and quality of nitrogenous fertilisers in barley 1927.
TABLE 20
I
PRACTICAL EXAMPLE 153
block in fact we may compare th~ plots having single
and double dressings of nitrogen with twice the sum
of the plots having none. Thus two blocks give
(pSI) +(p S2) +(m +(m 2) +(pC I) +(p C2)
I)
+CUI)+CU2)-2(p)-2(p)-2(1)-2(1) = 1483, I 157;
B C
while the other two give
(S;) +(S2) +(pm 1) +(pm 2) +(c1) +(C2) +(pUl)
+CPUz)-2(p)-2(p)-2(I)-2(1) = 1015, 1480 ;
A D
whence we obtain by subtraction
(p-I)(sl+s2-ml-m2+cl+c2-Ul-u2) = 145
No Single Double
Nitrogen. Nitrogen. Nitrogen. Total.
I
With phosphate 2237 3280 387 6 9,393
Without phosphate 199 6 2946 3499 8,44 1
-- -- -- --
Sum 4233 6226 7375 17,834
Difference 241 334 377 95 2
Q 333 2'1
-
264 2568
NQ .
963107
12038 '8375
TABLE 27
Arrangement and Yields of a Complex Experiment
(s p m)1 (s m P)2
when R', C' and T' are the incomplete totals for
row, column and treatment from which the observa-
tion was missing, and M is the incomplete total of
all observations.
(b) The sum of squares ascribable to treatments
in testing significance is
N
194 INC:REASE OF PRECISION
Consequently, if
t = 2093-fL
9.746
TABLE 32
No
Nitrogen. IN'ltrogen. Total. Difference.
,
65. Comparisons "with Intenictions
The last class of variation to be considered In
the tests of significance derivable from the analysis
of variance, consists of cases in which we compare
primary effects with interactions, or interactions with
interactions of a higher order. If, for example, a
test were carried out of five varieties of an agricultural
plant, using a Latin square laid down at each of ten
representative farms, in a region to which the five
varieties tested have all some claim to be thought
appropriate, the experiment at each farm will provide
an analysis of the form:
TABLE 34
Degrees of
Freedom.
Rows. 4
Columns 4
Varieties 4
Error. 12
Total 24
TABLE 35
Degrees of
Freedom.
Rows. 40
Columns 40
Places 9
Varieties 4
VxP 36
Error. 120
Total 249
a jm n n/p
b qn -n n/q
- - - -
n n 0 n/pq
I = ~ -
pq'
and we may now note the well-known fact that, if
our sample of observations were indefinitely increased,
the estimate of p, obtained from the data, tends in the
FUNCTIONAL RELATIQNSHIPS 229
I ~ the
Present
I", :::::: P)2
d;n Ip.
(d
wh case '
e~ce
it foIl / , \
OWs that
-4
i?~ ...
.l- 4 8 16
FIG. 3.-Quantity of information as to the density of organisms in a medium
according to the average number m of organisms per sample.
sInce
03
02
q
0)
-I o x M 1 2 3
4 5 6 7 8
FIG. 4.-Normal distribution curve to illustrate the interpretation of
percentage mortality as a pro bit value.
.
t h e quantIty 0
f.(' .
mlormaUtm, - , IS greatest at t hIS
n#.
pq
point. Hence for a single test, the highest precision
is obtained for a given number of animals by adjusting
the dosage approximately to the 50 per cent. death
point. The quantity nz2
1=-
pq
IS used further as the weight to be assigned to the
'7
'6
'5
o 10 20 30 40 50 60 70 80 90 100
FIG. s.-The amount of information as to the probit in terms
of the percentage mortality.
Hence,
1= 4 =h
_!_+!_+_!_+~ ,
al bl a2 b2
where h is the harmonic mean of the four frequencies
observed.
The information respecting the recombination
fraction, p, estimated in this way may be calculated,
as before, from that respecting log e,q and is evidently
Ip = hfp 2q 2.
We may now ask in what proportions the two
types of mating should be used, in order to secure the
greatest precision for a given number of organisms
bred and examined.
If PI> ql stand for the proportions observed from
matings of the first kind, and P2' q2' from matings of
the second kind, the amount of information has been
shown to be inversely proportional to
1 1 1 1
-+-+-+~,
nlPI nIql n 2P2 n 2q2
'or to
_1_ + _1_
nlPtql n 2P2q2'
We wish to make this quantity as small as possible,
o
242 MEASURE,MENT OF INFORMATION
n n
- IJ - n!41J
4 4
n
': (I-e) - - n!4(1 -0)
1 2n(I+20)
4
': (I -0)
4
4
n
- -
4
n/4(1-0) f
40(' ~O)('+BJ
11
~ (2+0) - 1I(4(2+1J)
4 4
ADVANTAGE OF COVPLING 245
Hence
TAliI.LE 38 ~
Types of
Family. Frequency expected. 11l. dl1l!d~. m. I~m (dn:r
d~
ATAtaTat Coupling Repulsion E=t E= t
--
~I
2 (r _X)2
0 0 0 X
0 2 0 (r _X)2 X2 } 1-2f -2 i 8
0 r 0 r 2x(r-x) 2X(I-X) 2~ +2 i 8
------
7 0
I 7
I 80!3
m. I dmld~. I m.
I
-
m (~:) 2.
I
I
~=l ~=!-
----,
First group 5~6E -6 3! 7 2 /7
Totals. 7 0 7 144/7
25 2 MEASUREMENT OF INFORMATI0N
The amount of ittformation available from seven
families, using Bernstein's classification, is therefore
only 144/7, in place of 80/3 available when the
families are fully classified. The fraction of the
information utilised by Bernstein's method is the ratio
of these two quantities, or 27/35. This ratio is termed
the efficiency of the method. F or larger families its
value is found to be somewhat, but not much, lower,
the limiting value for large families being 9/r6.
There is, however, no difficulty in utilising the whole
of the information available in the record, for families
of any size, once the loss of information, and its cause,
are recognised. The reader may find it instructive to
examine in like manner the classification of families
of three children.
(T - ())2 dl'
V2 :/,