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FDA Oversight of Laboratory Developed Tests Docket Number FDA-2010-N-0274

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FDA Oversight of Laboratory Developed Tests

Docket Number FDA-2010-N-0274

Comments submitted on behalf of the Greenwood Genetic Center by


Julie R. Jones, PhD, FACMG
Director, Molecular Diagnostic Laboratory
Greenwood Genetic Center
Greenwood, SC

The Greenwood Genetic Center (GGC) is a nonprofit institute, organized to provide


comprehensive genetic services. Since 1974, the Greenwood Genetic Center has been a leader in
the delivery of genetic services, committed to diagnosing genetic conditions, counseling
individuals and families, researching the causes of birth defects and genetic diseases, and
educating health care providers, teachers, and the public about genetics.

The Biochemical, Cytogenetic, and Molecular Diagnostic Laboratories at the Greenwood


Genetic Center provide genetic testing for over 350 rare genetic disorders. The vast majority of
these analyses are laboratory developed tests (LDTs) since FDA cleared or approved tests are not
available for most of these rare genetic conditions. Our patients rely heavily on LDTs for
diagnosis, preventative care, treatment (including monitoring efficacy), and family planning.
The Directors of the Diagnostic Laboratories at GGC are certified by the American Board of
Medical Genetics and have had extensive training in assay design and development,
interpretation of test results, and the implementation and maintenance of quality control and
quality assurance programs and are, thus, well qualified to develop and offer LDTs as part of our
genetic services.

We fully understand the FDA’s concerns regarding the analytic and clinical validity of
laboratory developed tests. The GGC Diagnostic Laboratories adhere to the highest standards
established by the Clinical Laboratory Improvement Amendments (CLIA) and the American
College of Medical Genetics, and for the past four years our laboratories have been working
toward implementing all of the practices and documentation required for certification by the
College of American Pathologists (CAP). While CLIA focuses on the overall quality of the
laboratory, CAP not only assesses the overall management and operation of the laboratory, it
also has strict requirements for the analytic validity of every test offered by the lab as well as the
implementation of comprehensive quality control and quality assurance programs including
mandatory proficiency testing. We understand firsthand the tremendous amount of time and
effort required to be in compliance with both CLIA and CAP guidelines, but we are fully
committed to meet and maintain the highest standards in order to provide the best possible care
for our patients.

The ultimate goal of GGC, as well as the FDA, is to provide the highest quality healthcare to our
patients. One of our greatest concerns regarding oversight of LDTs by the FDA is that additional
regulations and requirements would be so time consuming and financially burdensome it would
result in fewer tests being offered and, therefore, limit patient access to crucial testing. It would
also likely hinder test development, especially for those tests designed to diagnose rare genetic
disorders. Most of the genetic testing for rare and ultra rare genetic disorders are performed by
relatively small private companies or diagnostic laboratories at academic institutions, and the
majority of these laboratories do not have the financial resources necessary to submit 510(k)
applications to the FDA, and larger private companies are not interested in developing tests for
rare conditions because it would not be profitable for them to do so. While the intent of the FDA
in considering oversight of LDTs is to ensure quality and safety, the action may inadvertently
have the opposite effect if not implemented appropriately.

In order to continue to provide high quality healthcare to individuals with rare genetic disorders
and to prevent redundancy in the system, we would like to recommend the following:

1) The FDA should work closely with the Centers for Medicare and Medicaid Services (CMS)
and CAP to understand the extensive level of oversight currently in place and to improve these
existing programs rather than the FDA create an entirely new and independent system of
oversight for LDTs.

2) Since CLIA and CAP do not address clinical validity of genetic testing, we recommend
establishing a national mandatory test registry where all genetic diagnostic laboratories would be
required to list all of the tests being offered. This registry would enhance transparency regarding
clinical validity.

3) If the FDA has concerns regarding a specific company’s claims about the clinical validity or
utility of a genetic test, the FDA should address that specific company directly and require the
company to provide evidence for those claims. It would be much more effective for the FDA to
directly confront those individual companies who are engaging in questionable practices than for
the FDA to impose redundant and burdensome oversight on all laboratories.

4) Finally, we recommend that direct to consumer testing be subjected to a completely separate


system of oversight (or at least to supplemental regulations) since these tests pose additional
concerns as highlighted in recent congressional hearings.

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