JMB030-03-01 Fdoc 1
JMB030-03-01 Fdoc 1
JMB030-03-01 Fdoc 1
Review
J. Microbiol. Biotechnol.
Overview of Outbreak of Novel Coronavirus Disease 2019 (COVID-19) 315
Fig. 5. A representative diagram showing currently available diagnostic primer sets on SARS-CoV-2 genome.
Numbers represent genome positions according to SARS-CoV-2 isolate Wuhan-Hu-1 (GenBank: MN908947.3). Each primer set for the diagnosis
was indicated by grey arrows.
immediately to public databases after the start of the (N) have become key diagnostic targets for SARS-CoV-2
outbreak in Wuhan, China on January 10, 2020 (Wuhan- identification. Some countries hosting institutions have
Hu-1, GenBank Accession No. MN908947) [33]. The World shared their protocols and provided specific sequences of
Health Organization (WHO) currently recommends that all target primers on the WHO public database [36].
patient samples with suspected SARS-CoV-2 should be In the Republic of Korea, since the first confirmed case of
isolated from respiratory tract specimens (including nasal SARS-CoV-2 on January 20, 2020, the Korea Centers for
and pharyngeal swabs, sputum, or bronchoalveolar lavage Disease Control and Prevention (KCDC) rapidly applied
fluid) then shipped to authoritative laboratories for nucleic WHO recommended RT-PCR assays and approved various
acid amplification diagnostic testing. During international in vitro diagnostic test kits. The diagnostic test kits have
health emergencies, the real-time RT-PCR assay has shown been distributed to public health departments and hospitals
to be a sensitive and specific method to detect respiratory to prevent the COVID-19 spread in communities.
pathogens in patients with an acute respiratory infection
[34]. The presence of SARS-CoV-2 in respiratory specimens Antiviral Therapies
was detected by real-time RT-PCR and next-generation
sequencing. For the rapid development of real-time RT- During the COVID-19 outbreak, some potential antiviral
PCR diagnostic tests, the genome sequence was used to drugs are being urgently administered to patients with
design specific primers and probes to detect the SARS- COVID-19 (Table 1). Those drugs are described in detail
CoV-2 [35]. All assays can use viral RNA extracted from below.
SARS-CoV as positive control. The primers and probes
targeting specific genes of SARS-CoV-2 were used in real- Nucleoside Analogs
time RT-PCR assays as diagnostic tests (Fig. 5). The first
open reading frames (ORF 1a and 1b), RNA-dependent RNA Nucleoside analogs have been used as antiviral agents.
polymerase gene (RdRp), envelope (E), and nucleocapsid Nucleoside analogs generally interfere with cellular
J. Microbiol. Biotechnol.
Overview of Outbreak of Novel Coronavirus Disease 2019 (COVID-19) 317
Remdesivir Gilead Ebola 0.77 µM [41] Phase II clinical trial for Ebola
(GS-5734) (NCT03719586);
Under phase III clinical trials for
COVID-19 (NCT04252664)
Chloroquine Aralen/Plaquenil Sanofi Malaria 1.13 µM [41] Under clinical trials for
/Hydroxychloroquine COVID-19 (a)
Lopinavir and Ritonavir Kaletra Abbott HIV −b Under clinical trials for SARS [59]
Under clinical trial for COVID-19
(ChiCTR2000029539)
Pegylated interferon Virazole Valeant HBV, HCV 109 µM [41] Under clinical trial for COVID-19
with ribavirin (ChiCTR2000029387)
a
ChiCTR2000029939, ChiCTR2000029935, ChiCTR2000029899, ChiCTR2000029898, ChiCTR2000029868, ChiCTR2000029837, ChiCTR2000029826, ChiCTR2000029803,
ChiCTR2000029762, ChiCTR2000029761, ChiCTR2000029760, ChiCTR2000029740, ChiCTR2000029609, ChiCTR2000029559, and ChiCTR2000029542
b
Undetermined
nucleotide synthesis pathways and cause termination of antiviral agents such as interferon-α (ChiCTR2000029600)
viral genome replication by the accumulating mutations or baloxavir marboxil (ChiCTR2000029544).
and by blocking the entry of incoming natural nucleotides. Among the approved nucleotide analogs, ribavirin is
In a broad spectrum of RNA viruses, nucleoside analogs also a guanine analogue for treatment against hepatitis C
act as inhibitors of viral RNA synthesis. Nucleoside virus (HCV) and respiratory syncytial virus (RSV) infection
analogs target the RNA-dependent RNA polymerase that is and has been used to treat patients with SARS or MERS
responsible for the replication of viral RNA [37-39]. [42-44]. However, the drug showed side effects such as
Favipiravir (T-705) is a guanine analog approved for anemia in high dose treatment. The efficacy and safety of
treatment against influenza virus infection in Japan and the drug are uncertain [43, 44]. For COVID-19 treatment,
also can effectively inhibit replication of Ebola, yellow ribavirin was used in combination therapy with pegylated
fever, chikungunya, norovirus, and enterovirus [40]. A interferon (ChiCTR2000029387) to stimulate innate antiviral
recent study suggested that favipiravir is a potential responses, which was given in much lower doses to
candidate for treatment of SARS-CoV-2 infection showing minimize side effects. The combination therapies with
effective antiviral activities in Vero E6 cells (EC50 = interferon should be monitored carefully.
61.88 μM) [41]. For the treatment of patients with COVID- Remdesivir (GS-5734) is an adenine analog that has a
19, favipiravir was used in combination therapy with other similar chemical structure compared with tenofovir
alafenamide, an approved HIV reverse transcriptase cleaved by viral proteases for viral gene expression and
inhibitor [45]. Remdesivir also showed antiviral activity replication. Protease inhibitors prevent viral gene replication
against MERS-CoV (IC50 = 0.074 μM) and SARS-CoV (IC50 by binding to enzymes that are responsible for proteolytic
= 0.069 μM) in human airway epithelial (HAE) cell, and, cleavage [56, 57].
can inhibit MERS-CoV replication in mice [46]. This drug Both lopinavir and ritonavir are protease inhibitors,
has been developed for the treatment of Ebola virus approved as HIV drugs, and have been reported to have
infection and the therapeutic efficacy was confirmed in a antiviral activities against SARS and MERS [58, 59]. For
phase III clinical trial [47]. In the USA, the first SARS-CoV- treatment of SARS-CoV-2, clinical trials (ChiCTR2000029539)
2-infected patient was reported and administered have been initiated to test the antiviral activity of HIV
remdesivir [48]. For the inhibition of SARS-CoV-2, the protease inhibitors in patients. However, the antiviral
antiviral activity of remdesivir was tested in Vero cells efficacy of HIV protease inhibitors in coronavirus proteases
(EC50 = 0.77 μM) [41]. Remdesivir has emerged as the most is debatable.
promising candidate for the treatment of SARS-CoV-2 There is no specific antiviral agent against emerging
infection. Recently, two phase III clinical trials were novel coronavirus even though great efforts to develop
initiated to test remdesivir in patients with SARS-CoV-2 effective antiviral drugs have been made by targeting of
(NCT04252664 and NCT04257656). The therapeutic efficacy virus protease, polymerase, and host proteins following the
and safety of favipiravir and remdesivir still need to be MERS and SARS epidemics.
confirmed by clinical research in patients with SARS-CoV-2. In the Republic of Korea after initial reports of an
emerging novel coronavirus, experts from the government
Chloroquine and academy initiated projects for the screening of potential
antiviral drugs against SARS-CoV-2. These projects are
An approved small-molecule agent, chloroquine is a cheap supported by the Ministry of Science and ICT (MSIT) of
and safe drug for the treatment of malaria and sequesters Republic of Korea [60]. To identify novel treatments for
protons into lysosomes to increase the intracellular pH. patients infected with COVID-19, repurposing of FDA-
Chloroquine also has potential broad-spectrum antiviral approved drugs is also a realistic approach.
activities by inhibiting endosomal acidification, which is
required for virus-host cell fusion [49, 50]. Previous studies Current Status of COVID-19 Vaccine Development
determined the antiviral activity of chloroquine against
SARS, MERS, HIV, Ebola, Hendra, and Nipah viruses in Vaccines are the most effective strategy for preventing
vitro [51-54]. Chloroquine also showed inhibitory effects infectious disease since they are more cost-effective than
against SARS by interfering with glycosylation of the treatment, and reduce morbidity and mortality without
cellular receptor of SARS [52]. A recent in vitro study long-lasting effects [61, 62]. Preventive and therapeutic
revealed that chloroquine is a promising candidate antiviral vaccines will be of fundamental value as the most obvious
agent against SARS-CoV-2 infection in Vero E6 cells way to protect global health [62, 63].
(EC50 = 1.13 μM) [41]. To meet urgent clinical demand, Over the past two decades, three human coronaviruses
chloroquine is now being evaluated in clinical trials (SARS-CoV, MERS-CoV, and SARS-CoV-2) emerged
(ChiCTR2000029609). For the treatment of COVID-19 cases worldwide, causing considerable threat to global health
in China, patients were treated with chloroquine to test the [64]. However, there is still no approved vaccines for
efficacy and safety of this antiviral agent candidate against human coronaviruses. Research groups around the world
SARS-CoV-2 infection. The results of trials demonstrated are accelerating the development of COVID-19 vaccines
that chloroquine inhibits the exacerbation of COVID-19 using various approaches. Precise recognition mechanisms
[55]. Based on this finding, the experts from the government between the virus surface proteins and the host receptors are
and organizer of clinical trials suggested that chloroquine important for understanding of cross-species transmission
is a promising antiviral agent against SARS-CoV-2. and host tropism and for the establishment of animal
models for vaccine development [65]. The spike (S) protein
Protease Inhibitors of coronaviruses is an important target for vaccine
development because it mediates the infection mechanism
Protease inhibitors are attractive candidates for antiviral through receptor binding of host cells [65-67]. The S protein
drugs. The viral genome encodes polyproteins which are of human infectious coronaviruses recognizes various host
J. Microbiol. Biotechnol.
Overview of Outbreak of Novel Coronavirus Disease 2019 (COVID-19) 319
Table 2. Host tropisms and receptors of coronaviruses. response by introducing GSK’s adjuvant system to S-
Virus Host Cellular receptor Reference Trimer [73].
Alphacoronavirus The University of Queensland is developing subunit
HCoV-229E Human APNa [96] vaccines using the “molecular clamp,” a transformative
HCoV-NL63 Human ACE2b [97] technology [74]. A molecular clamp is a polypeptide that
FCoV Feline APN [98]
stabilizes a surface protein and improves recognition of the
correct antigen, thereby inducing stronger immune
CCoV Canine APN [98]
responses. This vaccine platform can be readily applicable
TGEV Porcine APN [99]
to a wide range of enveloped viruses and their product can
Betacoronavirus
be rapidly manufactured [74]. The University of Queensland
SARS-CoV Human ACE2 [100]
has applied GSK’s adjuvant system for the development of an
MERS-CoV Human DPP4c [101] effective vaccine and entered partnership with CEPI [73, 75].
HCoV-OC43 Human 9-O-acetylated sialic acid [102]
HCoV-HKU1 Human 9-O-acetylated sialic acid [103] DNA Vaccine
MHV Mouse CEACAM d
[104] DNA vaccines represent an innovative approach by direct
a
Aminopeptidase N injection of plasmids encoding the antigens, accompanied
b
Angiotensin-converting enzyme 2 (ACE2) with a wide range of immune responses [76]. These
c
Dipeptidyl peptidase 4 (DPP4/CD26) advantages are applied with prophylactic vaccines and
d
Carcinoembryonic antigen-related cell adhesion molecules (CEACAM) therapeutic vaccines. Recently, various DNA vaccine
platforms have been developed to improve the efficacy of
receptors, including ACE2, APN, and DPP4 (Table 2). vaccines by using electroporation to deliver plasmids and
SARS-CoV-2 and SARS-CoV use ACE2 as a receptor. The adding adjuvant to enhance the immune responses [77].
homology between SARS-CoV-2 and SARS-CoV is Inovio Pharmaceuticals, in collaboration with Beijing
approximately 75% for the spike (S) protein-RBD [68]. The Advaccine Biotechnology, has started pre-clinical trials for
S1 subunit of S protein contains a receptor-binding domain DNA vaccine (INO-4800) against COVID-19 [78]. INO-4800
(RBD) and the S2 subunit is necessary for membrane fusion induces activation of T cells by delivering DNA plasmids
between host cells and viruses [12, 69]. The following that express the SARS-CoV-2 spike [79]. This vaccine platform
describes the current status of vaccine development against has advantages that can produce therapeutic antibodies
COVID-19 through various approaches. and activate immune cells by delivering the vaccines
intradermally into the patient. Inovio Pharmaceuticals is
Recombinant Subunit Vaccine preparing for phase I trials in the U.S.A. and China with
In general, subunit vaccines are advantageous over other support from the Coalition for Epidemic Preparedness
types of vaccines in that they are highly safe and have Innovations (CEPI) [80].
fewer side effects by inducing the immune system without
introducing infectious viruses [12]. Subunit-based vaccine mRNA Vaccine
development studies have also reported enhancement of T mRNA vaccines are rapidly developing technologies to
cell immune responses and generation of high titer treat infectious diseases and cancers. mRNA-based vaccines
neutralizing antibodies in vivo [70, 71]. contain mRNAs encoding the antigens, which are translated
Clover Biopharmaceuticals is pre-clinical testing a at the host cellular machinery by vaccination [61, 81]. mRNA
recombinant subunit vaccine based on the trimeric S vaccines have advantages over conventional vaccines, by
protein (S-Trimer) of the SARS-CoV-2 [72]. The S protein the absence of genome integration, the improved immune
contains three S1 heads and a trimeric S2 stalk [67]. Clover responses, the rapid development, and the production of
Biopharmaceuticals confirmed the generation of a native- multimeric antigens [81].
like trimeric viral spike in mammalian cell culture-based Moderna, Inc. has started phase I clinical trials for
expression system and the detection of antigen-specific mRNA-1273, an mRNA vaccine, encoding viral spike (S)
neutralizing antibodies in the sera of fully-recovered protein of SARS-CoV-2. It was designed in collaboration
COVID-19 patients [72]. Recently, Clover Biopharmaceuticals with the National Institute of Allergy and Infectious
and GSK announced a partnership to improve immune Diseases (NIAID) [82]. In contrast to conventional vaccines
J. Microbiol. Biotechnol.
Overview of Outbreak of Novel Coronavirus Disease 2019 (COVID-19) 321
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