CSF3R 4
CSF3R 4
CSF3R 4
REVIEW
An overview on CALR and CSF3R mutations and a proposal
for revision of WHO diagnostic criteria for myeloproliferative
neoplasms
A Tefferi1, J Thiele2, AM Vannucchi3 and T Barbui4
Disease-specific mutations facilitate diagnostic precision and drug target discovery. In myeloproliferative neoplasms (MPN), this is
best exemplified by the chronic myeloid leukemia-associated BCR-ABL1. No other mutation in MPN has thus far shown a similar
degree of diagnostic accuracy or therapeutic relevance. However, JAK2 and KIT mutations are detected in more than 90% of
patients with polycythemia vera and systemic mastocytosis, respectively, and are therefore used as highly sensitive clonal markers
in these diseases. JAK2 and MPL mutations also occur in essential thrombocythemia (ET) and primary myelofibrosis (PMF), but their
diagnostic value is limited by suboptimal sensitivity and specificity. The molecular diagnostic gap in JAK2/MPL-unmutated ET/PMF is
now partially addressed by the recent discovery of calreticulin (CALR) mutations in the majority of such cases. However, bone
marrow morphology remains the central diagnostic platform and is essential for distinguishing ET from prefibrotic PMF and
diagnosing patients those do not express JAK2, MPL or CALR (triple-negative). The year 2013 was also marked by the description of
CSF3R mutations in the majority of patients with chronic neutrophilic leukemia (CNL). Herein, we argue for the inclusion of CALR
and CSF3R mutations in the World Health Organization classification system for ET/PMF and CNL, respectively.
Table 2. 2008 World Health Organization diagnostic criteria for myeloproliferative neoplasms
Major criteria
1 Hemoglobin (Hgb) Platelet count X450 109/l Megakaryocyte proliferation and atypia,c accompanied
418.5 g/dl (men) by either reticulin and/or collagen fibrosis, ord
416.5 g/dl (women) orb
2 Presence of JAK2V617F or Megakaryocyte proliferation with large and mature Not meeting WHO criteria for CML, PV, MDS, or other
JAK2 exon 12 mutation morphology. myeloid neoplasm
3 Not meeting WHO criteria for CML, PV, PMF, MDS or Demonstration of JAK2V617F or other clonal marker or
other myeloid neoplasm no evidence of reactive BM fibrosis
4 Demonstration of JAK2V617F or other clonal
marker or no evidence of reactive thrombocytosis
Minor criteria
1 BM trilineage — Leukoerythroblastosis
myeloproliferation
2 Subnormal serum — Increased serum LDH level
erythropoietin level
3 Endogenous erythroid — Anemia
colony growth
4 — Palpable splenomegaly
Abbreviations: BM, bone marrow; CML, chronic myelogenous leukemia; LDH, lactate dehydrogenase; MDS, myelodysplastic syndrome; WHO, World Health
Organization. aPV diagnosis requires meeting either both major criteria and one minor criterion or the first major criterion and two minor criteria. ET diagnosis
requires meeting all four major criteria. PMF diagnosis requires meeting all three major criteria and two minor criteria. bHgb or hematocrit 499th percentile of
reference range for age, sex or altitude of residence or red cell mass 425% above mean normal predicted or Hgb 417 g/dl (men) and 415 g/dl (women) if
associated with a sustained increase of X2 g/dl from baseline that cannot be attributed to correction of iron deficiency cSmall to large megakaryocytes with
aberrant nuclear/cytoplasmic ratio and hyperchromatic and irregularly folded nuclei and dense clustering. dIn the absence of reticulin fibrosis, the
megakaryocyte changes must be accompanied by increased marrow cellularity, granulocytic proliferation and often decreased erythropoiesis (that is,
prefibrotic PMF).
Chronic neutrophilic leukemia (CNL) Atypical chronic myeloid leukemia (aCML) Chronic myelomonocytic leukemia (CMML)
9 9
PB leukocytosis X25 10 /l PB leukocytosis X13 10 /l Persistent PB monocytosis 41 109/l
480% Segmented neutrophils/bands mNeutrophils/precursors with prominent
dysgranulopoiesis No BCR-ABL1
o10% PB immature granulocytesa X10% Immature granulocytesa
o1% PB myeloblasts o20% PB myeloblasts No PDGFRA or PDGFRBmutations
BM hypercellular
Neutrophils increased in % and number No BCR-ABL1 o20% Blasts or promonocytes in BM or PB
o5% myeloblasts No PDGFRA or PDGFRBmutations Dysplasia in one or more myeloid lineages or
Normal neutrophilic maturation Clonal cytogenetic or molecular abnormality
Megakaryocytes normal/left shifted o2% PB basophilia Monocytosis has lasted for X3 months AND
all other causes of monocytosis excluded
No BCR-ABL1
mutations,7 the same had not been realized for the 35–40% of In the second study by Nangalia et al,14 CALR mutations were
patients with ET or PMF who do not express JAK2 mutations.8–11 not seen in 258 patients with PV/post-PV MF or 253 patients with
The discovery of MPL mutations in 200612 only partially addressed JAK2/MPL-mutated ET/PMF/ post-ET MF. CALR mutational
the problem because of its low mutational frequency, estimated at frequencies were 71%, 56% and 86% in JAK2/MPL-unmutated ET
10–20% in JAK2-unmutated ET or PMF.10,11,13 In December 2013, (n ¼ 112), PMF (n ¼ 32) or post-ET MF (n ¼ 14), respectively. In this
two groups reported the occurrence of novel calreticulin (CALR) study by Nangalia et al.,14 CALR mutations were infrequently seen
mutations in JAK2/MPL-unmutated PMF or ET.14,15 Both groups in MDS (8.3%; n ¼ 120) including RARS (11%; n ¼ 27), CMML (3%;
found mutual exclusivity between CALR, JAK2 and MPL mutations. n ¼ 33) and atypical CML (3.4%; n ¼ 29) but not in RARS-T (n ¼ 6),
CALR is a multi-functional Ca2 þ -binding protein chaperone CML (n ¼ 28), AML (n ¼ 48), systemic mastocytosis (n ¼ 114),
mostly localized in the endoplasmic reticulum (ER). Located on eosinophilic disorders (n ¼ 2), ‘idiopathic’ erythrocytosis (n ¼ 5),
chromosome 19p13.2, CALR contains nine exons and its transient abnormal myelopoiesis (n ¼ 10), lymphoid malignancies
protein three domains: N-domain (residues 1–180), P-domain (n ¼ 287), solid tumors (n ¼ 502) or control samples (n ¼ 550).
(residues 181–290) and C-domain (residues 291–400). Knocking Similar to the observations by Klampf et al.,15 Nangalia et al.14 also
out CALR in mice is lethal and causes impaired cardiac found an association between CALR mutations and higher platelet
development.16 count and lower hemoglobin level in ET; in addition, their study
In the study by Klampfl et al.,15 CALR mutations were not suggested an increased incidence of fibrotic transformation
seen in 382 cases of PV but were detected in 25% of patients in CALR-mutated ET without apparent survival difference.14
with ET (n ¼ 311) and 35% of those with PMF (n ¼ 203). The All CALR mutations seen in the above two studies14,15 were
authors subsequently enriched their JAK2/MPL-unmutated patient exon 9 frame-shift mutations with somatic insertions or deletions.
population by adding 211 such cases with ET or PMF and reported Two variants constituted more than 80% of the CALR mutations
CALR mutational frequencies of 67% and 88% in JAK2/MPL- seen: type 1 variant (p.L367fs*46) resulted from 52 bp deletion and
unmutated ET (n ¼ 289) and PMF (n ¼ 120), respectively. They also was more frequent in PMF, and type 2 variant (p.K385fs*47)
found CALR mutations in 3 (13%) of 24 patients with refractory resulted from 5-bp TTGTC insertion. In the study by Klampfl et al.,
15
anemia with ring sideroblasts and marked thrombocytosis these two common variants, respectively, accounted for 53%
(RARS-T). In this particular study,15 CALR mutations were not and 32% of all mutant CALR; the corresponding frequencies
seen in acute myeloid leukemia (AML; n ¼ 254), MDS (n ¼ 73), in the study by Nangalia et al.14 were 45% and 41%. Only three
CMML (n ¼ 64) or CML (n ¼ 45). In regards to clinical and cases of homozygous CALR mutations were reported and all three
laboratory correlative studies, CALR, compared with JAK2, displayed p.K385fs*47. Several other distinct variants were seen
mutations were associated with lower hemoglobin level, lower infrequently. All CALR mutations resulted in one base pair reading
leukocyte count, higher platelet count, lower risk of thrombosis frame shift and an altered C-terminal that is missing the KDEL
and better survival in ET and lower leukocyte count, higher (lysine, aspartic acid, glutamic acid and leucine) endoplasmic
platelet count and better survival in PMF.15 reticulum retention motif and is positively rather than negatively
Table 4. 2014 proposed revision for World Health Organization (WHO) diagnostic criteria for BCR-ABL1-negative myeloproliferative neoplasms
Major criteria
1 Hemoglobin 416.5 g/dl (men) 416 g/ Platelet count X450 109/l Megakaryocyte proliferation and atypiad,
dl (women) or hematocrit 449% (men) accompanied by either reticulin and/or
448% (women) collagen fibrosis ore
2 BM trilineage myeloproliferation with Megakaryocyte proliferation with large and Not meeting WHO criteria for CML, PV, ET, MDS
pleomorphic megakaryocytes mature morphology or other myeloid neoplasm
3 Presence of JAK2 mutation Not meeting WHO criteria for CML, PV, PMF, Presence of JAK2, CALR or MPL mutation
MDS or other myeloid neoplasm
4 Presence of JAK2, CALR or MPL mutation
Minor criteria
1 Subnormal serum erythropoietin level Presence of a clonal marker (e.g. abnormal Presence of a clonal marker (e.g. abnormal
karyotype) or absence of evidence for karyotype) or absence of evidence for reactive
reactive thrombocytosis bone marrow fibrosis
2 Presence of anemia or palpable splenomegaly
3 Presence of leukoerythroblastosisf, or increased
lactate dehydrogenasef
Abbreviations: BM, bone marrow; CML, chronic myelogenous leukemia; MDS, myelodysplastic syndrome. aPV diagnosis requires meeting either all three major
criteria or the first two major criteria and one minor criterion. bET diagnosis requires meeting all four major criteria or first three major criteria and one minor
criterion. cPMF diagnosis requires meeting all three major criteria or the first two major criteria and all three minor criteria. dSmall-to-large megakaryocytes
with aberrant nuclear/cytoplasmic ratio and hyperchromatic and irregularly folded nuclei and dense clustering. eIn the absence of reticulin fibrosis, the
megakaryocyte changes must be accompanied by increased marrow cellularity, granulocytic proliferation and often decreased erythropoiesis (that is,
prefibrotic PMF). fDegree of abnormality can be borderline or marked and institutional reference range should be used for lactate dehydrogenase level.