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Supported by NIH (grant GM43825), the U.S. De-
18. A. B~elawska,H. M. Crane, D. Liotta, L. M. Obeid, Y.
42. R. T. Dobrowsky and Y. A. Hannun, J. Biol. Chem. partment of Defense (DAMD17-94J4301), and the
A. Hannun, J. Biol. Chem. 268, 26226 (1993).
267,5048 (1992);R. T. Dobrowsky, C. Kambayashi, Amercan Cancer Society (CB122). I thank L. Obeid
19. L. Rboni, R. Bassi, S. Sonnno, G. Tettamanti, FEBS for a careful and critical review of the manuscript.
M. C. Mumby, Y. A. Hannun, ibid. 268, 15523
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RESEARCH AARTICL
a/., ibid. 271, 12646 (1996).
20. A. Gomez-Muiioz, D. W. Waggoner, L. O'Brien, D.
N. Brindey, J. Bioi. Chem. 270, 26318 (1995); G.
Dbaibo et ai. , Proc. Natl. Acad. Sci. U.S.A. 92, 1347
(1995).
Structure of Staphylococcal
21. R. A. Wolff, R. T. Dobrowsky, A. Bielawska, L. M.
Obeid, Y. A. Hannun, J. Biol. Chem. 269, 19605
(1994).
a-Hemolysin, a Heptameric
22. A. Gomez-Muiioz, A. Martin, L. O'Bren, D. N. Brind-
ley, ibid., p. 8937; T. Nakamura et ai. , ibid., p. 18384;
M. E. Venable, G. C. Blobe, L. M. Obeid, ibid., p.
Transmembrane Pore
26040; Z. Kiss and E. Deli, FEES Lett 365, 146
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270. 5007 11995): Y. Nakarnura et ai.. J. immunoi. Stephen Cheley, Hagan Bayley, J. Eric Gouauxt
156, 256 ( i 9 9 6 ) : ' ~ .Wong, X.-B. Li, N. Hunchuk,
J. Biol. Chem. 270, 3056 (1995).
23. J. Quintans, J. Kilkus, C. L. McShan, A. R. The structure of the Staphylococcus aureus a-hemolysin pore has been determined to
Gottschalk, G. Dawson, Biochem. Biophys. Res. 1.9 b, resolution. Contained within the mushroom-shaped homo-oligomeric heptamer is
Commun. 202, 710 (1994); M. Chen eta/., Cancer
Res. 55, 991 (1995); S. J. Martin eta/., EMBO J. 14,
a solvent-filled channel, 100 b, in length, that runs along the sevenfold axis and ranges
51 91 (1995); H. Sawai et ai., J. Bioi. Chem. 270, from 14 b, to 46 b, in diameter. The lytic, transmembrane domain comprises the lower
27326 (1995); B. Brugg, P. P. M~che,Y. Agid, M. half of a 14-strand antiparallel p barrel, to which each protomer contributes two p strands,
Ruberg, J. Neurochem. 66, 733 (1996). each 65 b, long. The interior of the p barrel is primarily hydrophilic, and the exterior has
24. M. J. Smyth et ai., Biochem. J. 316, 25 (1996); S. J.
Martn et a/., J. Bioi. Chem. 270, 6425 (1995). a hydrophobic belt 28 b, wide. The structure proves the heptameric subunit stoichiometry
25. J. Zhang et a/., Proc. Nati. Acad. Sci. U.S.A. 93, of the a-hemolysin oligomer, shows that a glycine-rich and solvent-exposed region of
5325 (1996). a water-soluble protein can self-assemble to form a transmembrane pore of defined
26. S. J. Martin eta/. , Cell Death Differ 2, 253 (1995).
27. A. Ito and K. Horigorne, J. Neurochem. 65, 463
structure, and provides insight into the principles of membrane interaction and transport
(1995); Y. Goodman and M. P. Mattson, ibid. 66, activity of p barrel pore-forming toxins.
869 (1996).
28. M. A. Raines, R. N. Koesnck, D. W. Gode, J. Bioi.
Chem. 268, 14572 (1993).
29. J. K. Westwick, A. E. Bielawska, G. Dbaibo, Y. A.
Hannun, D. A. Brenner, ibid. 270, 22689 (1995); S. T h e a-hemolysin (aHL)of the human cytes, and endothelial cells (1). Membrane-
Pyne, J. Chapman, L. Steee, N. J. Pyne, Eur. J. Bio- pathogen Staphylococcus aureus is secreted bound monomers assemble to form 232.4-
chem. 237, 81 9 (1996); K. M. Latinis and G. A. Ko-
retzky, Biood 87, 871 (1996).
as a 33.2-kD water-soluble monomer that kD heptameric transmembrane pores (2).
30. M. Verheij eta/., Nature 380, 75 (1996). binds to rabbit erythrocytes and human The sensitivity of cells to aHL ranges from
31. S. Schutze, T. Machle~dt,M. Kronke, J, Leukocyte platelets, erythrocytes, monocytes, lympho- human erythrocytes, which require solution
I
Fig. 1. Stereo diagram of the electron density distribution in the triangle region calculated with 21FI, -
digitating networks that confer stability on
the heptamer.
The primary structure, corresponding el-
lFcl coefficients and phases from the refined model contoured at 1a.The separation of the polypeptide ements of secondary structure, and diagrams
chain from a protomer core to form the stem p strands (bottomof view)is evident in the electron density. of a protomer are shown in Fig. 3. The
Solvent molecules modeled as waters are indicated by red spheres. protomers adopt a tertiary fold that is dis-
Fig. 3. (A) Ribbon diagram of an isolated protomer with p strands numbered ment following heptamer formation on membranes (52). Single cysteine
consecutively.This view is from the "outside"of the heptamer. The p-sand- mutations at the orange sites have a major effect on activity without chemical
wich domain (blue)is a scaffold for the protomer core and is formed by two modification and at the yellow sites represent positions where effects are
antiparallel p sheets that we define as the inner (strands 1, 2, 3, 13, 6) and seen only after chemical modification (20).Residues colored green are in-
outer (strands9,10,5,14,15,16)sheets,located on the interior and exterior volved in cell binding based on mutagenesis and chemical modification
of the cap domain, respectively. The rim domain (red),Tyr and Trp residues studies (20, 22). Purple circles indicate sites whose reactivity changes on
and glycines (whiteswatches on the ribbon and rope) are also indicated. The heptamer formation in site-directedchemical modification experiments; (half-
p strands that compose the stem domain are green. (8)Stereoview of a filled circles) highly reactive to less reactive; (filled circles) highly reactive to
protomer oriented similarly to the schematic in (A). (C) Correspondence unreactie; (outlined circles) low reactivity to higher reactivity. Abbreviations
between the primary sequence and protomer secondary structure with em- for the amino acid residues are: A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly;
phasis of important residues. Red squares define acrylodan-derivatizedsin- H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro; Q, Gln; R, Arg; S, Ser; T,
gle cysteine mutants in which the label is in a more hydrophobic environ- Thr; V, Val; W, Trp; and Y, Tyr.
-
strands are not tilted as far from the barrel
-
axis ( a 38") as are the P strands in barrels
with shear numbers of S = n + 4 ( a 45").
(about 70 A'). Nonetheless. sevenfold av-
eraged electron density maps enabled us to
obtain a reliable trace through this region
by Prolo3,the channel reaches a maximum
diameter of 46 A. The channel narrows to
-15 A in diameter at the juncture of the
Large p barrels (n > 8) with S = n have and allowed for the placement of amino triangle and the stem. Through the stem,
apparently not been observed before our acid side chains. the d i a ~ e t e of
r the channel varies from 14
to 24 A, depending on the volumeoof the
side chains protruding into the 26 A (C,-
C,) diameter cylinder. Both ends of the
stem are defined by rings of acidic $nd basic
residues, and the intervening 40 A is lined
by neutral amino acids. Two hydrophobic
bands. one formed bv seven Met113residues
and the second by seven Leu135residues, are
solvent-exposed on the interior of the pore
and demonstrate that hydrophobic residues
contribute to the lining of transmembrane
channels. The distribution of rings of neg-
atively and positively charged residues, in
combination with the bands of hydrophobic
groups, are reminiscent of the proposed ar-
rangement of polar and nonpolar groups in
the channel of the nicotinic acetylcholine
receptor (49).
Each promoter is involved in about 120
salt bridges and hydrogen bonds, partici-
pates in about 850 van der Waals contacts,
and buries almost one-third of the solvent
accessible surface area in the heptamer (Ta-
ble 2). Both polar and nonpolar interac-
tions are present in the five major interfaces
although the stem domain has a preponder-
ance of main chain hydrogen bonds. Most
(>98 percent) of the contacts occur be-
leads us to speculate that the base of the rim mechanism to describe the rapid increase refine specific molecular mechanisms.
and the crevice between the rim and stem in pore conductance at low pH and the The protomer structure and extensive
domains interact with the cell membrane. pH-dependent current fluctuations in the biochemical information provide important
In fact, fluorescence studies of a single cys- open channel (6), may involve protonation insights into the structure of a, and mech-
teine mutant labeled with acrylodan at po- 'of one or more Glu'" residues, disruption of anisms of assembly. Because the P sandwich
sition 266 in the rim domain indicate that '
G1ul '-Lys14, ion pairs, and enlargement of forms a compact and well-ordered domain
this site is exposed to a more hydrophobic the pore neck by rearrangement of Glu"' and there is little change in the secondary
environment upon heptamer formation and Lys14, side chains. Although not poised structure on heptamer formation (13), the
(52), thus suggesting membrane insertion. in a constriction of the pore, Asplz7 and water-soluble monomer ~robablvhas a ter-
Molecular basis of transport activity Asplz8 may participate in pH-dependent tiary fold that is similar to an a, protomer.
and mechanism of assembly. The aHL changes in conductance in aHL assembled Nonetheless, the amino latch and the gly-
heptamer structure provides a basis for un- on a cell membrane. cine-rich stem exhibit greater exposure to
derstanding the biophysical properties of Rectification and reduction in Dore con- aqueous solution in the a, state (13, 52).
the pore and forms the basis for detailed ductance at high transmembrane potentials To prevent spontaneous assembly of a, to
mechanistic studies. We find that the nar- (> 2 100 mV) may be understood in terms a, in aqueous solution and to maintain
rowest constriction in the pore is -14 A of varying degrees of conformational re- water solubility of a,, the hydrophobic res-
(Fig. 4), which is in agreement with previ- arrangement and channel closure at the idues of the stem p strands may pack against
ous approximations of the pore diameter glycine-rich stem base. This region of the the nonpolar patch defined by Phe'53,
(4). This constriction is formed by the side structure displays high thermal parameters Val'69, and Leu219(Fig. 5) in the a, state.
chains of Glu'", Lys14,, and Met'13, and it and could undergo conformational changes By covering this hydrophobic cluster, as-
probably confers the estimated 2-kD size leading to partial or complete steric block of sembly will be blocked until interaction
limit for transport of macromoleculesby the the pore in response to an applied mem- with a membrane bilayer triggers strand re-
pore (54). The ring of Glul" residues, lo- brane potential. In fact, substitution of five arrangement. In the a,, al*, and a,* forms,
cated within the Dore and at the to^ of the histidine residues for G l ~ " ~ - ,G l vvields
,' ~ ~ a the amino latch may participate in intra-
stem, forms favorable binding sites for a Znz+-regulatedpore that is closed by micro- protomer interactions with the inner sur-
range of di- and trivalent cations. On incu- molar Zn2+ added from either the cis or face of the p sandwich, some of which may
bation of a7 crystals with 5 mM U02C12, trans sides of a bilayer apparatus (17). These be analogous to the interprotomer amino
for example, we observe strong peaks (>7u) experiments emphasize that the polypeptide latch interactions in a7.Assembly of aHL
in difference Patterson and Fourier maps backbone can undergo conformational re- is probably controlled by a tradeoff of intra-
near the carboxylate groups of Glul". Sim- arrangements to yield a Zn2+ binding site protomer interactions in the a, form for
interprotomer and a,-membrane interac-
tions-in the a, form and thus may represent
a prototype for bilayer-catalyzed folding and
refolding.
c l l ~ ~aapore-forming
s motif for bacte-
rial toxins. In contrast to a wide range of
bacterial and insect toxins that utilize a -
helices to perturb or penetrate the bilayer
(55), the aHL heptamer structure defines
the criteria for membership in a family of
toxins that employ bilayer-spanning anti-
parallel p-barrels. The aHL protomer has
secondary and tertiary structural features in
common with aerolysin from A. hydrophila,
whose structure is only known in the water-
soluble form (56). Both protomeric species
have long p strands that form a p sheet
with a 180" twist, both have a domain
containing numerous solvent-exposed tryp-
Fig. 6. A stereo view of a model for the interaction of the heptamer with phospholipid head groups. tophan residues, and both toxins assemble
Difference electron density from a, crystals soaked in a solution containing DiC,PC shows 50 peaks
near the guanidinium group of ArgZW.We used the difference density in conjunction with chemical and heptameric O1igomen' The structure of
biochemical informationto guide the constructionof a model for the interactions between a, and seven the pore-foming domain of the aHL hep-
DiC,PC molecules. Residues Tyr1lZ,Lys116,Tyr118,His144,and Tyr148project from the surface of the tamer may define a more accurate for
TrplE7,ArgZW,and Metzo4define the rim side of the crevice, together forming the structure of the aerol~sin ore-forming
stem, and T r ~ l , ~TyrlE2,
,
an attractive binding site for phospholipid molecules. domain than the one obtained from fitting
channels in general. containing either 5 mM UO,CI, 10 mM OsCI,, 50 48. A. D. McLachlan, J. Mol. Bioi. 128, 49 (1979); A. G.
mM K,OsO,, or 50 mM K31rCI, and soaked for 1 to Murzin, A. M. Lesk, C. Choth~a,ibid. 236, 1369,
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18. B. E. Menzies and D. S. Kernodle, infect. immun. 62, followed by manual readjystments, first in the 2.4 A PHSINIH Shared Instrumentation Grant and a Lou-
1843 (1994). map and then in the 1.9 A map. is Block grant, respectively, for the FAST and R-
19. M. Krishnasastry, B. Walker, 0. Braha, H. Bayley, 39. T. A. Jones, J.-Y. Zou, S. W. Cowan, M. Kjeldgaard, Axis Ilc area detectors. Initial refinement was per-
FEBS Lett. 356, 66 ( I 994) Acta Crystaliogr. A47, 110 (1991). formed at the Pittsburgh Supercomputer Center.
20. B. Walker and H. Bayley, J. Bioi. Chem. 270, 23065 40. A. T. Brunger, X-PLOR. Version 3.7. A System for This work was supported in part by grants from the
(1995). X-ray Crystaliography and NMR (Yale Univ. Press, Office of Naval Research (J.E.G. and H.B.),the NIH
21. B. Walker and H. Bayley, Protein Eng. 8, 491 ( I 995). New Haven, 1992). (J.E.G.),the Martin D, and Virginia S. Kamen Sus-
22. R. Jursch et a/., Infect. immun. 62, 2249 (1994). 41. The structure was refined with X-PLOR (40), begin- taining Fund for Junior Faculty (J.E.G.),the Searle
23. A. Valeva, M. Palmer, K. Hilgert, M. Kehoe, S. ning from a crystallographic R value of 40.5 percent Scholars Program (J.E.G.), the NSF (J.E.G.), and
Bhakdi, Biochim. Biophys. Acta 1236, 213 (1995). at 2.4 A resolution. This was followed by alternating the DOE (H.B.),the Cancer Research Foundation
24. J. E. Alouf and J. H. Freer, Eds., Sourcebook of cycles of manual refitting to both 2F, - IF,( and Young Investigator Fund (J.E.G.), and the Medical
Bacterial Protein Toxins (Academic Press, San Di- F - lF,l omit maps and refinement of atomic Scientist Training Program at the University of Chi-
ego, CA, 1991). positions and B factors. Before the solvent was cago (M.R.H.).The coordinates have been depos-
25. M . C. Peitsch and J. Tschopp, Curr Opin. Celi Biol. added, the conventional R value was 0.229 and the ~tedat the Protein Data Bank at Brookhaven with
3, 710 (1991). free R value was 0.288 with good stereochemistry. accession number 7ahl.
26. Monomeric CYHL was isolated from cell culture super- Because the electron density features at the base
natants of Staphylococcus aureus (Wood strain 46; of the stem and rim regions are weak, these regions 30 July 1996; accepted 21 October 1996