Phytochemistry
Phytochemistry
Phytochemistry
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INTRODUCTION TO PHYTOCHEMISTRY
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INTRODUCTION TO
PHYTOCHEMISTRY
CHUKWUEBUKA EGBUNA1,*, JONATHAN C. IFEMEJE1,
TOSKË L. KRYEZIU2, MINAKSHI MUKHERJEE3, HAMEED SHAH4,
G.M. NARASIMHA RAO5, LAURENCE JOHN FRANCIS J. GIDO6,
and HABIBU TIJJANI7
1
Department of Biochemistry, Chukwuemeka Odumegwu Ojukwu
University, Uli, Anambra State, Nigeria, Tel.: +2347039618485
2
Department of Clinical Pharmacy, University of Pristina, Pristina,
Kosovo
3
Department of Biological Sciences, The State University of New York
at Buffalo, Buffalo, New York, USA
4
CAS Key Laboratory for Biomedical Effects of Nanomaterials and
Nanosafety, National Center for Nanoscience and Technology,
University of Chinese Academy of Science, 100049 Beijing, China
5
Department of Botany, Andhra University, Visakhapatnam,
Andhra Pradesh 530003, India
6
Research Center of the College of Medicine, Davao Medical School
Foundation Inc., Davao City, Philippines
7
Natural Product Research Laboratory, Department of Biochemistry,
Bauchi State University, Gadau, Nigeria
*
Corresponding author. E-mail: egbuna.cg@coou.edu.ng;
egbunachukwuebuka@gmail.com; https://egbunac.com
ORCID: https://orcid.org/0000-0001-8382-0693
ABSTRACT
1.1 INTRODUCTION
It will be recalled that in the food chain, plants are referred to as the producers
because they had the ability to trap energy from sunlight, harness and assemble
some basic units which they transform through some chemical process
into complex high energy-yielding compounds that are readily available
to organisms. Their generosity became overwhelmingly and practically
complex to comprehend at a glance. A field has to emerge – “phytochemistry.”
Phytochemistry is the study of chemicals produced by plants, particularly the
secondary metabolites. It takes into account their structural compositions,
the biosynthetic pathways, functions, and mechanisms of actions in the
living system. The study of phytochemicals has been instrumental in the
discovery of new plant natural products which are of commercial values
in various industries such as the traditional and complementary medicine
systems, pharmaceutical industries, nutraceuticals, and dietary supplement
industries. Not left out is the cosmeceuticals industries, clothing and textiles
industries, food, wine, and beverage industries, the military among others.
Owing to the consistent threat of microorganisms, environmental hazards
to public health, the significance of phytochemistry in the medical and
pharmaceutical industries for the quest for the discovery of new drugs has
overshadowed their essence in other industries.
Phytochemicals have been in existence since time immemorial and
are known to be responsible for the organoleptic properties (color, taste,
flavor, aroma, and odor) of plants, such as the smell of garlic, ginger,
and the deep purple color of blueberries. The ability of plants to exhibit
Introduction to Phytochemistry 5
curative potentials and the characteristic difference that exists within them
may also have awakened early interests for the knowledge about their
chemical compositions. In the plant kingdom, these variations are quite
glaring. One example is the Four O’Clocks plant (Mirabilis jalapa), called
the marvel-of-Peru, or beauty-of-the-night because of its ability to open in
mid-afternoon through the night and closes in the early morning. Mirabilis,
a Latin word meaning wonder, also radiates some pleasant fragrances
and exhibits flowers of different colors such as a white, red, pink, yellow,
and some two-toned blooms simultaneously on the same plant. This
phenomenal features in their biodiversity can be understood through the
study of some chemical networks and interactions within the plants and
its external environment. Plants are diverse and widely distributed from
lands, rocky hills, mountains to marine environments. There are over
400,000 species of plants in the world (Pitman and Jørgensen, 2002), out of
which only a small fraction of about 35,000–70,000 species of plants have
been screened for their medicinal use (Veeresham, 2012). The medicinal
potentials of phytochemicals are exhibited from the least primitive to higher
plants. According to Fabricant and Farnsworth (2001), about 80% of 122
plant-derived drugs are related to their original traditional uses. Reportedly,
as at the dawn of 21st century, 11% of the 252 drugs considered as basic
and essential by the World Health Organization (WHO) were exclusive of
flowering plant origin (Veeresham, 2012).
In the evolutionary study of phytochemicals, it was believed that there
was little free oxygen in the atmosphere when plants first evolved. The direct
consequence of this is that as plants metabolize, the oxygen concentration
in the world increased. This polluted the environment and to deal with
it, plants began to synthesize antioxidants molecules to protect it from
highly reactive species that are cytotoxic to the plant cells. Moreover, the
damaging effects of microbes on the cell structures of plants especially the
important biomolecules has left plants with no options than to synthesize
more bioactive compounds to protect it (see Chapter 3 for more details).
This evolutional theory is supported by recent evidence in the compositional
patterns of phytochemicals in plants. For instance, plant parts such as the
leaves, flowers, stems, barks, roots, and seeds that are prone to insects,
pests, microbial attacks, and the harsh environment have more amounts of
phytochemicals than other parts of the plants. Another supportive evidence
is the variation that exists in the same species of plants grown in the harsh
environment and those in areas with less environmental stress (see Volume
3, Chapter 12 and 13 for more information).
6 Phytochemistry, Volume 1
1.2.2 TRENDS
During the first decade of the 21st century, there was a decrease in the
interest of advancing the knowledge of plant-based chemistry by scientists
and pharmaceutical companies for greater interest in synthetic drugs because
they were easily mass-produced compared to the natural ones (Schmidt and
Ribnicky, 2008). However, due to reported side effects in patients, numerous
products were withdrawn from the market. A study has shown that the effect
of natural remedies persist higher for patients receiving treatment for their
long-lasting diseases. In view of this, there appears to be an increased usage
of plant products since 2010, which provides slower effects yet with fewer
side effects than synthetic medications. At present, new versions of the
pharmacopoeia are also adding recent knowledge about phytochemicals to
their volumes as well as gaining extended sophisticated products related to
the modification of plant enzymes to easily obtain therapeutic substances.
Worthy of note is that some remarkable phytochemicals have been discovered
from the marine environment. Marine-derived compounds have recently
gained a considerable interest because of the wide variety of pharmacological
applications. A detailed overview of marine phytochemistry can be found in
Volume 3 of this book.
are already part of our daily diet except for some refined foods such as sugar
or alcohol. The easiest way to get more phytochemicals is to eat varieties of
at least five to nine servings of fruits or vegetable per day representing colors
of rainbows. Chapter 6 of this book gave a holistic view of phytochemicals
acting as nutraceuticals.
and NMR methods have developed over the time and contributed to the
acquisition of atomic structures of proteins and protein–ligand interactions
to an increasing level of detail (Gore and Desai, 2014), the knowledge of
computational phytochemistry has also grown to give insight into protein
interactions with their ligands. Computational phytochemistry method has
been utilized by research-based pharmaceutical industries to study struc-
ture–activity relationships (Hughes et al., 2011).
This aspect of phytochemistry among other computer-aided drug
discovery program have gain extensive use in studies of drug candidates, to
increase their efficiency and development pipeline, based on their purpose
and required interest (Zhang, 2011). Among such programs are docking
techniques. Docking program is a software technique that allows the user
to fit a molecule (ligand) into target (protein)-binding sites. It can also be
used to predict the structure of the molecular interactions between these
pairs (ligand/protein). The ligands are often relatively the smaller molecules
which conformations (ligand–receptor complexes), binding energies or
affinities, and nature of interactions are assessed in the binding site of their
receptors, which are relatively larger macromolecules. The various software,
databases, and tools for molecular docking and dynamics simulations are
detailed in Chapter 19 of this book. Its applications are discussed further in
Volume 2.
Molecular docking studies have diverse applications. It is a powerful and
important modeling tool utilized in modern drug discovery. They are cheap,
convenient, and not time-consuming, as several samples could be asses in
lesser time. Prior to in vivo studies, molecular docking studies are used to
access lead compounds for further studies. Its applications to phytochemicals
studies are of immense importance, some of which are summarized below;
specification, MOL2 files, and chemical class may enable their use
in docking studies. This will ease the process of identification of
lead compounds from natural products and their development into
phytomedicines (Pathania et al., 2015).
3. Sorting out lead compounds: Molecular docking studies are applied
to a large database, in order to identify hit compounds. The defined
program and the various scores obtained from each compound can
be compared to identify such hit compounds.
4. Optimization of lead phytochemicals: Molecular docking can be
used to predict and subsequently develop a more potent, and effec-
tive drug candidates from selected phytochemicals. The develop
candidate end up with optimized ligand–protein interactions.
5. Identification of the mechanism of action: When in search of the
mechanism of action of certain active phytochemicals, molecular
docking studies may be applied in order to identify the nature of the
interaction of the compound with the protein. Their binding affinities
and nature of interactions can similarly be analyzed.
and measurable objectives. Even for qualitative studies, there must be a clear
set of indicators to be used in the research. A sound literature review needs
good statistics for the research to gain some traction regarding its signifi-
cance. Methodologies and data analysis must be systematic and abiding with
the fundamentals of the different fields not only biology but most commonly
with chemistry and mathematics. Lastly, publication and result dissemina-
tion require a grasp of the understanding of how statistics can be used to
relay findings in scientific yet technical manner. Essentially, the role of
biostatistics is to keep every aspect of a research, from the objectives down
to result publication, as efficient and valid as possible.
biology and statistics easier. Microsoft’s Excel spreadsheet has been able
to adapt to the increasing demand by publishing downloadable macros
that can be used for biostatistics, econometrics, and applied statistics.
SPSS and R GUI has been the go-to professional package and academic
statistical packages, respectively. SPSS offers user-friendly interface that
enables non-practitioners to run data, meanwhile, R GUI has been the
most dynamic statistical software tool as it takes advantage of the user’s
in-depth understanding of statistics to program through codes the different
tests. With the increasing demand, specific programs have been made
available for commercial usage. OpenEpi and Stata have been widely
used in clinical trials. Meanwhile, EpiInfo has been the go-to software for
medical professionals, researchers in clinical trials, and even by industrial
manufacturers. Chapter 18 of this book detailed the various statistical tools
used in phytochemical research with web links to download them while
using essential oil studies to make references to the features of few.
The PSA was founded in 2007 at Kuala Lumpur, Malaysia with Prof.
Yoshinori Asakawa (Japan) elected as the founding President and Prof. Iqbal
Choudhary M. (Pakistan) as the Vice President. The aim of the society is
to promote collaborative research between scientists and in the growth and
advancement of research in the field of natural products from of the region
and outside the region. It has different types of membership such as regular
membership, student membership, honorary members, life members, insti-
tutional membership with different subscription rates. More information can
be accessed from its website: http://phytochemsoc-asia.com/.
So far, a substantial progress has been made for the discovery of new phyto-
chemicals which could serve as a lead compounds for the development of
new drugs. Drug discovery is capital intensive which usually starts with
Introduction to Phytochemistry 27
Phytochemicals can act as cheap and raw materials for different classes of
nanoparticle (NP) synthesis, which has been discussed in details in Volume 2.
28 Phytochemistry, Volume 1
KEYWORDS
•• phytochemistry
•• phytochemicals
•• terpenes
•• flavonoids
•• alkaloids
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