BSCMSC
BSCMSC
BSCMSC
Master of Science
In
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Objectives of B.Sc./ M.Sc. Basic Science programme
The courses offered in the undergraduate programme at BBAU, Lucknow form part of a
comprehensive programme that will enable the students to understand the basic laws of nature and
develop necessary skills to apply them to any desired area or discipline. The program is planned as a
student centric collaborative learning. Students get trained for a career in basic sciences or any related
applied science ortechnology.
General Pattern
The courses offered during the first two years (Semesters I to IV) are meant as basic and introductory
courses in Biology, Chemistry, Mathematics and Physics. These are common and mandatory for all
students. They include four theory courses and three lab courses from each stream. These courses are
meant to give a flavor of the various approaches and analyses and to prepare the students for advanced
courses in later years of study. In addition, there will be Interdisciplinary Courses for computational
skills and mathematical methods as well as Trans-disciplinary Courses on Scientific Inquiry and
Conceptual Inquiry.
In the third and fourth years (Semesters V-VIII), students have the freedom to choose advanced courses
based on their interest and inclination. The courses offered in the first two years would help them to
make an informed judgment to determine their real interest and their aptitude for a given subject. The
fifth year will be devoted to a thesis by research, which completes the requirements of the program.
Every student has to register for approximately 24 credits in a semester. During Semesters I-IV, she/he
has to register for all the courses offered. During Semester V-VIII, she/he can register for up to 30
credits per semester, the minimum being 24. Each credit earned requires 4 hours of study per week.
DETAILS OF COURSES
The list of courses offered from each discipline with brief contents and lists of reference books is given
below. Other relevant details like objectives, topic in detail, pattern of assessment, additional books
for study and reference etc. will be prepared by the course instructor and communicated to the students
well in advance before start of each semester.
BIOLOGY
The overarching philosophy of the curriculum in Biology stems from one of the primary mandates of
the BBAU - to expose undergraduate students to interdisciplinary research in the basic sciences, and
provide them with the necessary skills, knowledge and training to pursue successful careers in science.
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The first four semesters serve as an introduction to Biology. Keeping in mind the diversity amongst
the incoming students in their school education, we introduce all students to the unity and diversity of
biology and the hierarchy of organization of biological systems. We emphasize the distinctness of
biological systems while demonstrating the continuum from the physical/chemical world to
Biology.The courses in these semesters introduce variation, evolution, diversity and the irreducible
complexity of life and biological systems. The unity of life is presented through a thorough description
of biology at sub-organismal (reductionist as well as systems view) and organismal levels. At the sub-
organismal reductionist level, students are introduced to the building blocks of life (biochemistry and
molecular biology), information perpetuation and transfer (genetics), cells as the basic functional unit
of life (cell biology) and higher levels of organization (tissue systems and physiology). In terms of the
systems view at the sub-organismal level, the students learn about design principles of biological
systems (systems biology) and the development of the organism. In organismal biology, students focus
on interactions of the organisms with the environment, dynamics of populations/ communities and
evolution at various temporal and structuralscales.
Courses in the third and fourth years cover in greater detail the content introduced in the first two years.
Courses such as cell and molecular biology, biophysics and biochemistry, physiology, genetics,
biostatistics and evolution and ecology comprise core courses that allow students to obtain a deeper
understanding of biology. Advanced courses in areas such as immunology, neurobiology, disease
biology, developmental biology, ecology, epigenetics, etc., provide students an opportunity to gain a
specialized and comprehensive understanding of those fields.Building on the foundations in physical,
mathematical, chemical and information sciences, the Biology curriculum integrates concepts,
examples and techniques from other disciplines. Experts from other disciplines regularly contribute to
courses in Biology, and the curriculum emphasizes quantitative and computational applications in
biology through courses in mathematical biology, biostatistics, bioinformatics, biophysics, chemical
biology and computational biology.There is a strong emphasis on using current primary literature in
the classroom. This ensures a continually updated content, and at the same time, trains students to read,
understand, and critically evaluate the primary scientificliterature.
Participatory teaching techniques such as group learning, assignments and student presentations are
actively used.To encourage research-based learning techniques, our lab courses of the first three
semesters are designed with small open-ended experimental modules. Third and fourth year students
are encouraged to participate in lab training/theory projects in Biology research groups in addition to
the classroom-based courses. These provide an opportunity to independently design and carry out
laboratory and/or theoretical projects and participate in reading projects.
In the final (fifth) year, students undertake an independent, stand-alone research project. The project
can be carried out in any laboratory within or outside Lucknow. The goal is to develop the technical,
analytical and cognitive skills necessary to pursue a career in scientific research. The goal is to expose
students to contemporary research practices and tools including literature reviews, advanced
techniques, data collection and analysis, and also in scientific writing and presentation. This is the
culmination of the training from the previous years and is an opportunity to directly participate in the
process of knowledge production in Biology.
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CHEMISTRY
The General Chemistry course covered during the first semester will lay the foundation for advanced
concepts in chemistry. Here the students would be exposed to a general overview of chemistry in
everyday life. Some topics covered include units, measurement, periodicity, thermodynamics, kinetics,
bonds, spectroscopy, solutions, chirality and biochemistry. This course serves as the common
backbone for the ensuing three semesters of physical, inorganic and organic chemistry, all
accompanied by laboratory courses. The laboratory course has been designed to complement
classroom interactions. Together, these seven courses in the first four semesters should sufficiently
prepare a student for advanced courses in chemistry and serve as the minimum for anyone who wishes
to major in other disciplines of science such as physics or biology.
1. Chemical Physics: These cover courses in the interface of physics and chemistry and include
Symmetry and Group Theory, Advanced Molecular Spectroscopy, Statistical Thermodynamics, and
Quantum Chemistry and Solid State Chemistry. When combined with suitable physics courses, a
student can have a good exposure to both chemistry andphysics.
2. Chemical Biology: Several courses in the interface of chemistry and biology are offered by the
chemistry division. Starting from the sixth semester, a sequence of courses of Bioorganic Chemistry,
Chemical Biology and Medicinal Chemistry can complement relevant course in biology division to
cover advanced topics in the interface of these twostreams.
3. Materials Science: Courses offered under this broad section would cover areas that are common to
chemistry, physics and to some extent biology. Starting from fifth semester a series of courses such as
Self-assembly in Chemistry, Solid-state chemistry, Polymer chemistry and Advanced materials
chemistry will give good insights to relevant courses both in physics and biology. Further, the courses
offered under this section would be useful to all the students who want to specialize in any branch of
organic, inorganic or physicalchemistry.
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MATHEMATICS
Very basic mathematics, by which one means the bare minimum that any scientist should be familiar
with, is treated in the following six core courses in the first four semesters: Single Variable Calculus,
Multi Variable Calculus, Introduction to Computing, Linear Algebra, Probability & Statistics, and
Introduction to Proofs.
The above examples are mere suggestions because the epithets of pure and applied are totally artificial:
there is nothing impure about applicable mathematics and much of pure mathematics has evolved out
ofapplications.
Some clusters or prerequisites:
The bottom line: Students should choose sequences based on what excites them the most in
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Mathematics. Students also have one reading project course per semester where they can diversify and
explore other subjects within mathematics. Based on students' interests, and available faculty, the
course structure has the provision for topics courses. For example, one can have a course on
“Representation Theory” under “Topics in Algebra”, or a course on “Lie Theory” under “Topics in
Analysis” in the 7th or 8th semesters. Topics courses will often have certain prerequisites that will be
announced by the instructor well ahead of time. Students are also required to take courses from at least
two different disciplines in their 5th and 6th semesters (= thirdyear).
PHYSICS
The courses offered in Physics at BBAU form part of a comprehensive program at the level of a
Bachelor's and Master's degree (BSc and MSc). The Physics program aims to enable students to
understand the basic laws of nature and develop the necessary skills and tools to apply this
understanding to other areas and disciplines. Here students are prepared for careers in basic physics as
well as in related applied sciences or technology.
The courses offered in Physics for the B.Sc/ M.Sc program are structured in two levels.
The four World of Physics courses in the first four semesters offer all students an exposure to both the
rigour and breadth of physics, concentrating mainly on mechanics, waves and matter, electricity and
magnetism, and quantum physics. There are three Laboratory Courses that expose them to key
experiments and teach them skills in handling basic equipment. In addition, there are two
Interdisciplinary Courses offered during this period: Mathematical Methods that provides the basic
mathematical tools needed for a program in science, and Thermodynamics that provides an
introduction to the concepts needed for the further study of physics andchemistry.
Interdisciplinary Courses
The pattern of course work followed at BBAU permits students specializing in other disciplines or
areas, also to take courses from Physics. Thevarious courses like; Mathematical Methods, Nonlinear
Dynamics, Fluid Dynamics, Nanoscale Physics and Material Science are offered such that students
interested in other disciplines also benefit from them.Similarly, a student interested in a career in
Physics and interdisciplinary areas related to Physics, can take courses from other disciplines. Some
such courses are Neurobiology, Genetics, Biophysics etc from Biology; Statistical Thermodynamics,
Symmetry and Group Theory, Quantum Chemistry etc from Chemistry; and Differential Geometry,
Statistics, Complex Analysis etc from Mathematics. During Semesters V and VI, students have to take
at least one course from another discipline.
Semester Projects
Unique to the BBAU undergraduate program is the laboratory training/theory project offered in each
semester during the four semesters V-VIII. This gives an opportunity to work under the guidance of a
faculty member on a topic of mutual interest to earn six credits. This allows students to slowly build a
solid platform from which they may launch themselves into a more challenging fifth-year research
project later on. Any specialization or advanced training needed, in addition to the courses offered, can
be achieved through careful choice of this lab training/theory projectcourse.
Semester IX-X
During the final two semesters of the program, students do an extended project for six credits that
result in the M.Sc. thesis.
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COURSE STRUCTURE FOR B.Sc./M.Sc. BASIC SCIENCES
1stSemester
2nd Semester
Course Code Course Title Maximum Marks Credits
End Semester Sessional
IBS-201 World of Biology II:Introduction 70 30 4
of Cell Biology andBiochemistry
IBS-201a* Cellular Basis of Structure and 35 15 2
Function in Biology
IBS-201b* Biophysics I 35 15 2
IBS-202 World of Chemistry II: Physical 70 30 4
Chemistry
IBS-202a* Statistical Thermodynamics 35 15 2
IBS-202b* Quantum Chemistry 35 15 2
IBS-203 World of Mathematics II: Multi 70 30 4
Variable Calculus
IBS-203a* Ordinary differential equations 35 15 2
IBS-203b* Vector calculus 35 15 2
IBS-204 World of Physics II: Waves and 70 30 4
Matter
IBS-204a* Mathematical Physics-I 35 15 2
IBS-204b* Fluid Dynamics 35 15 2
MPDC-205 Moral Studies 15 1
Total Credits 24+1
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3rdSemester
4th Semester
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5th Semester
6th Semester
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IBS-622 Electronics II 35 15 2
IBS-623 Group Theory in physics 35 15 2
IBS-624 Lab Course 105 45 6
Total Credits 24
7th Semester
8th Semester
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IBS-813 Algebraic Number Theory 105 45 6
IBS-814 Complex Analysis 105 45 6
IBS-815 Topics in Geometry & Topology 70 30 4
IBS-816 Topics in Discrete Mathematics 35 15 2
IBS-817 Topics in Algebra 35 15 2
IBS-818 Topics in Applicable Mathematics 105 45 6
9th Semester
10th Semester
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LEARNING OUTCOMES
COURSE STRUCTURE FOR B.Sc./M.Sc. BASIC SCIENCES
1stSemester
Learning Outcome: The content of this paper is so designed that will provide basic and
good knowledge of diversity, evolution, taxonomy, unicellular, multicellular organisms
and also students will be able to learn about foundation of physics and chemistry both.
IBS-101a* Biomolecules 35 15 2
Learning Outcome: This paper will help in understanding the basic knowledge of
carbohydrates,lipids,proteins and nucleic acid which help in techniques used in
biochemistry and research.
Learning Outcome: The students will attain knowledge about the basic gene
constitution of various microbes and also bacterial transduction, conjugation etc. and
viral genetics too.
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• metabolism of carbohydrates, lipids, and proteins in humans. They will be able
to describe in structures and words the metabolism of sugars through the
pathways of glycolysis.
• different bio synthesis of molecules.
IBS-102b* Chemoinformatics 35 15 2
Learning Outcome: a student will be able to compute limits derivatives and definite and
indefinite integrals of algebraic, logarithmic and exponential functions and Solve
problems by using differentiation and integration.
Learning Outcome Student will learn about Differentiation integration and their
applications in real life problems such as to find the equation of motion of a accelerating
body we sue differentiation.
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IBS-104b* Classical Mechanics 35 15 2
2nd Semester
Learning outcome: This paper will help students to attain knowledge about basic cell
biology including different cell organelles like Endoplasmic reticulum, Golgi complex
etc., hydrogen bonding and most important molecular biology including DNA
replication, transcription etc.
Learning Outcome: This paper contains the knowledge about the transport of
molecules in cell, signal transduction and cell division help to the student about learning
and research purpose.
IBS-201b* Biophysics I 35 15 2
Learning Outcome: Students will be able to learn about physics involved in biology
including thermodynamics of macromolecules and emphasis of light in biology.
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• states of matter and how they depend on temperature and pressure as well as
how they co-exist in phase equilibria
• the transport of ions and thermodynamic functions with applications to
electron transfer in biological systems.
chemical kinetics; how reaction rates are measured and represented in rate laws, and
applications of chemical kinetics in studying enzyme mechanisms.
Learning Outcome student will able to compute line integrals green’s theorem surface
integrals which is useful in physics and chemistry.
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3rdSemester
Learning Outcome: The students will be able to learn more about population genetics
aspects such as Hardy Weinberg law including random mating, panmictic population. In
ecology they will get knowledge of food chain, food web biodiversity.
IBS-301a* Biophysics II 35 15 2
IBS-301b* Neurobiology I 35 15 2
Learning Outcome: This paper include the Knowledge about nervous system, Action
potential and transmission of nerve impulse which help to understand the neuroscience
and disease related to nervous system.
Learning Outcome Student will learn Laplace transform and inverse Laplace transform
which useful in finding the behaviour of different biological fluids using equation
motion related to fluids in the form of Differential equations.
Learning Outcome: Completion of this course will enable the students to:
• Understanding of: Importance of quantum mechanics compared to classical
mechanics at microscopic level.
• Understand various tools to calculate Eigen values and total angular
momentum of particles.
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IBS-304b* Nanotechnology 35 15 2
Learning Outcome:
The goal is to generate new interest in nanoscience and nanotechnology among stud
ents and prepare them with the knowledge and skills
• Apply principles of basic science concepts in understanding, analysis and
prediction of matter at Nano scale
• To develop human resource with specialization in theoretical and experimental
techniques required for career in academia and Nano technology driven
industry
4th Semester
Learning outcome: The students after studying this particular paper will easily be able to
understand and explain about detailed embryogenesis such as different stages morula,
blastula, gastrula and organogenesis too. Students will also attain knowledge about
regeneration of stem cell and also basic immunology included in this course.
IBS-401a* Vaccines 35 15 2
Learning Outcome: The students will be able to learn about types of vaccines which are
prepared from killed and attenuated system and also the mechanism of action and drug
resistance.
IBS-401b* Neurobiology II 35 15 2
Learning Outcome: Students will be able to know about the knowledge ofdifferent brain
imaging function like MRI,PET Scan, emotions, learning and memory help to understand
the different diseases in daily life.
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• the hybridization and geometry of atoms and the three-dimensional structure of
organic molecules.
• the reactivity and stability of an organic molecule based on structure, including
conformation and stereochemistry.
• an understanding of nucleophiles, electrophiles, electronegativity, and resonance.
• the prediction of mechanisms for organic reactions.
how to use their understanding of organic mechanisms to predict the outcome of
reactions.
Learning Outcome Student will be able to learn terms position, velocity acceleration ,
straight line motion, absolute motion, relative motion relative acceleration and motion
relative to rotating axes.
Learning Outcome: Student will be able to analyze centre of mass, motion of inertia,
kinetic energy of a rigid body in a plane and conservation of energy.
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IBS-404 World of Physics IV: Quantum 70 30 4
Physics
Learning Outcome: After the completion of the course, Students will be able to
• Student will be able to select molecular spectroscopy methods suitable for solving
given scientific problem.
• Student will know basic information on molecular methods (THz)
• Student will be able to analyze results of measurements using molecular
spectroscopy methods.
• Understand the concept of continuous absorption and emission spectra.
IBS-404b* Electromagnetism 35 15 2
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5th Semester
Learning Outcome: Student will be equipped with the knowledge to handle techniques
about DNA fingerprinting, Cloning methods, DNA sequencing, making genomic
libraries help to handle various problem in life and criminal cases.
IBS-504 Biostatistics 35 15 2
Learning Outcome: This paper will provide students knowledge about various basic
statistics variables. Mean, median, mode and types of various tests as t-test etc.
Learning Outcome: Students have to choose dissertation topic related with the
subject and also some experiments such as blood test, parasitic slide preparation etc.
Learning outcomes: Student will gain the lab techniques of Separation of ternary
quantitative analysis of organic compounds.Electrophilic aromatic substitution reactions
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transformations; Carry out linear combinations of orbitals to form molecular orbitals;
Apply this to polyatomic systems (e.g. square planar, octahedral)Be familiar with Morse
potential energy curves, P/R branches in rotational spectroscopy; Find symmetry species
of normal modes of vibrations; Deduce which modes are IR/Raman active; Have a firm
grasp ???*, n??* transitions, Jablonski diagrams; Understand the role of symmetry in
electronic spectroscopy, selection rules; Apply orbital symmetry to chemical reactions.
This module will develop skills in numeracy and problem solving. The students should
develop the ability to apply their knowledge to problems related to those covered in the
lectures. The subject specific skill is the acquisition of a theoretical framework which
underlies much of spectroscopy.
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d. titrations
e. the calibration and use simple spectrophotometers, pH meters, centrifuges, and
vortexers
f. The analysis of data using a spreadsheet program such as Excel
g. how to design and perform experiments to determine the rate, order, and
activation energy of chemical reactions by varying concentrations and/or
temperature
h. methods to measure equilibrium concentrations and equilibrium constants for
acid-base, solubility, and complexation reactions given initial concentrations
of reactant
i. the preparation of buffer solutions at a required pH, given a choice of solutions
of acid/conjugate base pairs
j. the identification of the absence or presence of a number of cations or anions
in solution, using tests based on acid-base, solubility, and complexation
equilibria.
k. the acquisition of solubility vs. temperature data and the calculation of ΔH,
ΔS, and ΔG for dissolving a salt at a given temperature.
l. how to set up and use an electrolysis cell to determine the equivalent mass of
an unknown metal
m. the determination of the molar mass of an unknown nonelectrolyte and an
unknown electrolyte from a freezing point depression experiment
n. ligand strengths by the stability of the complexes and precipitates formed by
the ligands with a given metal ion
Learning Outcome student will able to Compare and contrast the geometries of
Euclidean and non- Euclidean and will use transformational and axiomatic techniques
to prove the theorem. And demonstrate the knowledge of the historical development of
Euclidean and non-Euclidean geometries.
IBS-515 Analysis 70 30 4
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• understand the physics of stars, including nuclear and neutrino processes, the
emission, absorption and transport of radiation, and stellar atmospheres,
• have an ability to interpret observations of stars including spectra and binary
phenomena.
• This paper deals with the study of various phenomenons of Nano science and
Nano technology.
• First unit describes the free electron theory which can describe various
phenomenons.
• The last unit describes various synthesis techniques like cluster beam
deposition, ion beam deposition, chemical bath deposition techniques etc.
• The understanding of the subject leads the students in their research work.
IBS-522 Electrodynamics 35 15 2
• After taking this course, students are able to appreciate the need and necessity
of four Maxwell equations.
• They have applied it for electromagnetic field tensor which is one of the major
aspects of theoretical physics.
• They have understood the covariance formulation of Maxwell equation.
• One of the major advantages of this course is that it is very much related to the
real life where the ionosphere is playing very important part.
• Students now know the basics of scattering and absorption and relate them to
real life phenomena.
• They have learnt about wave guides and transmission lines and propagation of
waves through them.
• Understand the relationship between electrical charge, electrical field, electrical
potential, and magnetism
Learning Outcome: Student will learn lab techniques of Skin depth measurement,
Generation and transmission ofelectromagnetic waves (Lecher Wire). Magnetic
susceptibility measurement
Learning Outcome: The student will has to identify, talk to and mutually agree on a
researchproject before registering for this course. The scope, duration, structure,
expectations, and evaluation criteria for the course are decided by the project supervisor.
Total Credits 24
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6th Semester
Learning Outcome: This paper include the knowledge about the Introduction of
plants,Physiology growth hormone and mineral nutrition which help to the student to
understand the breeding techniques,crop improvement and research and socio economic
development
Learning outcome: This paper of immunology will provide detailed knowledge to the
students about the natural and acquired immunity including macrophages dendritic cells,
B-and T-cell immunity. The students will also be able to learn more about complement
system and major histocompatibility complex.
Learning outcome: The Paper will help the students to know the role of water and
biomolecules in life. The paper also focuses on the structure and functions of biomolecules
including protein, Carbohydrates, Nucleic etc. Some other topics such as Thermodynamic
principles, Enzyme biochemistry are included which helps in providing the advanced
knowledge of Biochemistry. Some biochemistry techniques are also covered which helps
the students to know about Lab techniques and Instrumentation part for further research.
IBS-604 Epigenetics 35 15 2
Learning outcome: This study will provide students to know how the expression of DNA
can be changed without changing the structure of DNA itself and will be able to
understand what causes disease and is not only essential to create treatments but also
precautions.
Learning outcome: The students will attain knowledge of evolution of body plans,
stem cell biology and tissue repair, Regeneration and nervous system development. The
students will also learn embryogenesis in plants and genes controlling embryogenesis.
Learning outcome: The student has to identify, talk to and mutually agree on a
research project before registering for this course. The scope, duration, structure,
expectations, and evaluation criteria for the course are decided by the project
supervisor.
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mechanics, particle in a box, harmonic oscillator, rigid rotor, hydrogen atom, variational
principle, perturbation theory, introduction to many electron systems, electron spin,
antisymmetry, Slater determinants, 2-e system, Valence Bond theory, Molecular Orbital
theory, Huckel theory, Hartree-Fock theory, post Hartree-Fock methods.
Learning Outcome: Students will gain an understanding of the use of nuclear magnetic
resonance spectroscopy, mass spectrometry and infrared spectroscopy, ESR
spectroscopy for organic structure elucidation
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• synthesize at least one organic compound will be synthesized and identify the
corresponding alteration in the functional groups.
• correctly calculate reaction yield for relevant lab experiments.
• analyze the given procedure of an experiment and suggest or recommend
improvements.
• apply safety rules in the practice of laboratory investigations.develop better
understanding of the organic chemistry behind everyday observations such as
the action of soap, or application of color dyes on variety of fabrics.
Learning Outcome student will be able to define lebesgue measure Algebra and sigma
Algebra of a set . and will also Learn about Canter’s set Cantor’s ternary function ,
integrability, etc. Determine convex function , General measure integration of measurable
functions
Learning Outcome: a student will be able learn about different types of graphs and their
applications in real life situations.
Learning Outcome: Students will be able to use matrix algebra and related matrices to
linear transformation which is useful in programming of many languages in computer.
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IBS-619 Quantum Mechanics I 105 45 6
• After taking this course students will be able to appreciate the beauty of
quantum mechanics. They will know all types of representations of operators
and ways to apply them in different problems.
• The most important thing students learned from this course was how to solve the
hydrogen atom problem by using quantum mechanics.
• Students learned about time independent degenerate and non degenerate
perturbations and to apply them in harmonic oscillator.
IBS-622 Electronics II 35 1 2
5
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• Understand the basic electronics of logic circuits, counters, registers and be
able to use integrated circuit packages.
Learning Outcome: This covers Introduction to discrete groups, Lie groups and Lie
algebras, Liealgebras in particle physics, discrete and continuous symmetries in nature,
symmetries and conserved quantities, gauge symmetries and fundamental forces.
Learning Outcome: The student will has to identify, talk to and mutually agree on a
researchproject before registering for this course. The scope, duration, structure,
expectations, and evaluation criteria for the course are decided by the project supervisor.
Total Credits 24
7th Semester
Learning Outcome: Students will be more aware and get more knowledge about
various dreadful and important diseases like cancer, AIDS and various fungal,
bacterial and parasitic diseases. The students will also know more about precautions
and preventive measures.
Learning Outcome: This paper will help in understanding the knowledge about the tissue
culture, crop improvement tool, breeding techniques and secondary metabolites help in socio
economic development.
Learning Outcome: Students will be equipped with various experimental techniques such
as X-ray crystallography, electron microscopy, recombinant technology and purification
tools to isolate biomolecules.
Learning Outcome: This paper will provide more information about the physiology of sub-
mammalian vertebrates to the students. Nervous and sensory systems across various
invertebrate groups and respiration, digestion, moulting, sensory, nervous and
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neuroendocrine systems and reproduction in insects will also provide knowledge about the
lower groups of animals.
IBS-705 Immunology II 35 15 2
Learning Outcome: After studying this paper the students will be able to learn and explain
molecular interactions between the T cell receptor and MHC molecules; immune synapse,
polyspecificity of T cell receptor recognition, molecular mimicry and epitope spreading; T
cell memory; Peripheral tolerance and regulatory lymphocytes; Interactions between the
immune and the nervous systems.
Learning Outcome: The student has to identify, talk to and mutually agree on a research
project before registering for this course. The scope, duration, structure, expectations, and
evaluation criteria for the course are decided by the project supervisor.
Learning Outcome: Students will learn about Field, extension field, Galois Group and its
application . This theory is applicable in various programming language.
Learning Outcome student will learn about linear spaces which is nothing but vector space
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but approach is different, l-p spaces , normed linear spaces, and other important spaces which
are the extension of topological spaces.
IBS-716 Algorithms 35 15 2
Learning Outcome: Student will learn about different types of algorithms which are useful
in different programming languages and data analysis and experimental techniques.
Learning Outcome: Students will be able to Compute with the characteristic polynomial,
eigenvectors, eigenvalues and eigen spaces, as well as the geometric and the algebraic
multiplicities of an eigenvalue and apply the basic diagonalization result,
• After studying this course, students can calculate the ground state and excited state
energies of various real life systems by using Principle, WKB method and
perturbation methods.
• Students will be knowing about the Einstein’s coefficients and relating them to
lasers.
• They know about scattering in two different frames and can easily calculate
scattering amplitude and scattering cross section.
• Students can write total energy and wave function as slater determinant for system
of identical fermion.
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• Understand the behaviour of real gases.
Learning Outcome: The student will has to identify, talk to and mutually agree on a
researchproject before registering for this course. The scope, duration, structure,
expectations, and evaluation criteria for the course are decided by the project supervisor.
Total 24
Credits
8th Semester
Learning outcome: This paper provides the knowledge of basic concepts of microbiology
include microbial diversity, taxonomy and classification. Students also study the role and
importance of micro-organisms in human life, about Biodegradation and Bioreactor. Such
topics are helpful to move further in various Industrial, Pharmaceutical other research sectors.
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IBS-802 Advanced Biochemistry II 105 45 6
Learning outcome: Students will be able to learn more about carbohydrate, protein and fat
metabolism. This paper will also improve knowledge of students about different metabolism
pathways and different processes such as glycolysis, gluconeogenesis pathway, amino acid
biosynthesis and urea cycle.
Learning outcome: The students will be equipped with the knowledge to prepare sequences
analysis (pair wise alignment, multiple sequence alignment,motif discovery, gene
annotation), inferring phylogenetic trees (UPGMA, neighbor-joining, maximum parsimony,
maximum likelihood), analysis of next generation sequencing data.
Learning outcome: The students will attain knowledge of nucleic acid, protein structure and
chemistry. FISH methods, chromosome painting studies and molecular cytogenetics, copy
number variations (CNV), array-comparative genomic hybridization (a-CGH), Chromosome
conformation capture, 3C, 4C and Hi-C; microarrays, next generation DNA and RNA
Sequencing.
Learning outcome: This paper will provide information about the relationship of
mathematics and biology, such as modeling in neuroscience (the classification of spiking
activity based on different bifurcation scenarios), enzyme kinetics and Michaelis Menten
equations.
Learning Outcome: The student has to identify, talk to and mutually agree on a research
project before registering for this course. The scope, duration, structure, expectations, and
evaluation criteria for the course are decided by the project supervisor.
Learning outcome: The paper focuses the Instrumentation part and the Structural Methods
and Analysis techniques that may help the students to learn the biological techniques which
would be beneficial for their further research work.
The course will also play an important role in understanding the biological macromolecules
with their functions with the help of advanced techniques.
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IBS-809 Medicinal Chemistry 70 30 4
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• Produce rigorous arguments (proofs) centered on the material of number theory,
most notably in the use of Mathematical Induction and/or the Well Ordering
Principal in the proof of theorems.
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• Use the definition and properties of linear transformations and matrices of linear
transformations and change of basis, including kernel, range and isomorphism,
• Compute with the characteristic polynomial, eigenvectors, eigenvalues and
eigenspaces, as well as the geometric and the algebraic multiplicities of an eigenvalue
and apply the basic diagonalization result,
• Compute inner products and determine orthogonality on vector spaces, including
Gram-Schmidt orthogonalization, and
• Identify self-adjoint transformations and apply the spectral theorem and orthogonal
decomposition of inner product spaces, the Jordan canonical form to solving systems
of ordinary differential equations.
Learning Outcome: student will learn different mathematical techniques in different field
of mathematical modelling , Science and technology.
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5
• The objective of the paper is to aware the students about the field of Condensed
matter physics.
• This paper enable the students to understand about the crystal structure, interaction
with X-ray, lattice vibrations, defects, electronic properties and the magnetic
properties etc.
• It also helps the students to understand various properties about crystals.
• This paper deals with the study of structural properties of solids
Learning Outcome: The student will has to identify, talk to and mutually agree on a
researchproject before registering for this course. The scope, duration, structure,
expectations, and evaluation criteria for the course are decided by the project supervisor.
Total 24
Credits
9th Semester
Learning Outcome:In this topic students willsupposed to carryout field/ laboratory training
cum experimental works and prepare a corresponding report along with a research proposal
for future career. The area should include from basics to latest developments and discoveries
which will impart a broad training in various discipline of life sciences and biotechnology,
these students will be able to pursue careers in pharmaceutical industries, research laboratories,
clinical research organizations, school colleges and Universities as researcher or
academicians..
Page 41
Learning Outcome Student will learn about General research, Computer applications , GLP
and Bio safety, IPRE and Bioethics, and laboratory courses.
Learning Outcome:student will learn about general statistics and probability , population and
sampling theory, experimental design and bioinformatics tools.
Learning Outcome: student will learn about different programming languages which are
useful in various research fields.
Total Credits 24
10th Semester
Learning OutcomeStudents are required to visit research institute for real exposure in
subject and qualitative interactions.
Page 42
SEMESTER I
Content:
Unit 1: Introduction: What is biology: Salient features of life; Importance of biology on the frontiers
of science and technology; Brief history of biology; How plants, animals and microorganisms shaped
human history.
The logical structure of biology: Foundations of physics and chemistry, concepts of complexity,
emergent properties, adaptation, optimality, diversity, chance and necessity, structure-function
relationship, theme and variations, individual variability and plasticity; Nature of experimentation in
biology and statistical inference.
Unit 2: Diversity and comparative organization of life forms: Introduction to natural history, art and
methodology of making and recording observations. Shapes and sizes of life forms: Size range,
properties and constraints associated with size. Scaling rules in biology. Adaptability and optimality
of shapes. Expanse of the living world.
Concept of species. Principles of taxonomy, outline classification. Hierarchical organization: cell,
tissue, organ, systems, individual, kin, group, society, community, ecosystem. Organizational themes
in plants and animals.
Unit 3: Evolution: Brief history of evolutionary thought. Nature of evidence in evolution. Mechanisms
of Darwinian evolution. Concept of adaptive versus neutral evolution. Concept of evolutionary
relationships and phylogeny.
Unit4: Biological information: Nature of biological information. Mechanisms of transmission of
information: genetic, epigenetic, cultural and other mechanisms of inheritance. Signaling and its role
in different levels of interactions.
Laboratory Course
Content: This practical course will cover basic concepts in biology, cell biologyand cell culturing
techniques with an emphasis on 3D's in biology – draw, describe and differentiate.
Practical include: Basics of microscopy; Field trip; Microscopy of samples; Micrometry of different
cells; Staining of bacteria, fungi, Plant cells, Blood cells and Bone marrow; Osmosis; Mitosis; Crude
cultures – Bacteria and Protozoa; Pure culture techniques; Sterilization and media preparation;
Streaking of bacteria; Enumeration of bacteria.
Recommended Readings:
1. Principles of Biology: Interactive textbook from NatureEducation
2. Biology: N. Campbell and J. Reece (2005) 7th edition, Pearson, Benjamin,Cumming
3. Evolutionary Analysis: S. Freeman and J.C. Herron (2007) PrenticeHall
4. Evolution: D.J. Futuyma (1997) Sinauer Associates
5. Evolution: N.H. Barton, D.E.G. Briggs, J.A. Eisen, D.B. Goldstein and N.H. Patel (2007) Cold
Spring Harbor LaboratoryPress
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IBS-101 a:Biomolecules
Classification and physico-chemical properties of amino acids and proteins. Classification & properties
of mono-, di-, oligo and poly- saccharides. Structural features and compositional analysis of
polysaccharides. Biological importance of glucose, fructose, maltose, sucrose, lactose, starch,
glycogen. Classification, structure, properties and functions of lipids. Structure, properties and
functions of nucleic acids.
Recommended Readings:
1. Christopher K. Mathews, K.E. van Holde and Kevlin G. Ahern, Biochemistry, Pearson
Education (Singapore) Pte. Ltd. Indian Branch, 482 F.I.E. Patparganj, Delhi.
2. Lubert Stryer, Biochemistry, W.H. Freeman and Company, New York.
3. D.L. Nelson, M.M. Cox, Lehninger’s Principles of Biochemistry, Macmillan Worth Pub.
Inc. NewYork
4. Geoffery Zubey, Biochemistry, Macmillon Publishing Company, NewYork
5. Donald Voet and Judith Voet, Biochemistry, John Wiley & Sons, NewYork.
Recommended Readings:
1. Chemistry: Principles, Patterns and Applications: B.A. Averill and P. Eldredge (2007)
1stedition, PrenticeHall
2. Chemical Principles: S.S. Zumdahl (2009) 6th edition, Houghton-MifflinCompany
3. The Biological Chemistry of the Elements: J.J.R.F. da Silva, R.J.P. Williams (2001)
2ndedition, Oxford UniversityPress
Contents: Overview of basic structure of carbohydrates, nucleic acids, proteins and lipids, secondary
metabolism, bioenergetics, biological and organic reaction mechanisms, coenzymes and cofactors,
amino acids: biosynthesis of amino acids promoted by pyridoxal phosphate, Shikimic acid pathway to
aromatic amino acids, peptides, depsipeptides antibiotics and their biological activities, biosynthesis
of nucleosides.beta-oxidation of fatty acids, biosynthesis of fatty acids, various lipids, polyketides,
prostanoids, leucotrienes and other secondary metabolites, metabolites of mixed biosynthetic origin,
from acetate, mevalonate and shikimate pathway, isoprenoids: isoprene unit, monoterpenes,
diterpenes, sesquiterpenes and triterpenes, and biological activities, steroids: steroidogenesis,
biosynthesis and biologicalimplications.
Recommended Readings:
1. Lehninger Principles of Biochemistry: D.L. Nelson and M.M. Cox (2008) 5th edition, W.H.
Freeman
2. Biochemistry: D. Voet and J.G. Voet (2004) 3rd edition,Wiley
IBS-102b: Chemoinformatics
Recommended Readings:
1. How to Solve It: G. Polya (2004) Princeton UniversityPress
2. How to Read and Do Proofs: D. Solow (2009)Wiley
3. How to Prove It: A Structured Approach: D.J. Velleman (2006) Cambridge UniversityPress
4. Proof in Mathematics: An Introduction: J. Franklin & A. Daoud (2011) Kewbooks
5. What is Mathematics: R. Courant and H. Robbins (1996) Oxford UniversityPress
6. Calculus Vol. 1 and 2: T.M. Apostol (2007)Wiley
7. Calculus: M. Spivak (2006) Cambridge UniversityPress
8. A Course in Calculus and Real Analysis: S.R. Ghorpade and B.V. Limaye (2006)Springer
9. Introduction to Calculus and Analysis, Vol. 1, 2 and 3: R. Courant and F. John (1989)
Springer
10. Calculus: J. Stewart (2007) CengageLearning
Contents:
Section 1: Place of mechanics in physics, Range of validity of classical mechanics. Kinematics and
mathematical tools, Newton's laws, Examples of one, two and three dimensional motion under forces.
Section 2: Central force motion and application to planetary motion, Rotational motion of a rigid body,
Potential energy, multiparticle systems and conservation laws.
Section 3: Frames of reference, Galilean relativity, non-inertial frames, basic special relativity, Least
action principle, Hamiltonian and phase space.
Laboratory Course
Contents: Torsional pendulum, physical pendulum, Young's modulus, coefficientof friction, Euler's
relation, Faraday's and Lenz's law of electromagnetic induction, Biot-Savart's law, Stoke's law,
Page 46
numerical experiments.
Recommended Readings:
1. Mechanics: C. Kittel, W.D. Knight, M.A. Ruderman, C.A. Helmholz and B.J. Moyer (2008)
Berkeley Physics Vol 1, Tata McGraw-HillLtd
2. Classical Mechanics: R.D. Gregory (2008) Cambridge UniversityPress
3. Introduction to Classical Mechanics: D. Borin (2009) Cambridge UniversityPress
4. Classical Mechanics: J.R. Taylor (2005) University ScienceBooks
5. Mechanics: L.D. Landau and I.M. Lifshitz (2007) 3rd edition,Butterworth-Heinemann
Recommended Readings:
1. Mathematical methods in classical and quantum physics- T. Das and S.K. Sharma, University
Press(1998)
2. Theory and problems of vector analysis- M. Spiegel, Schaum Out line series, McGraw Hill Book
company.
3. A first course in general relativity- B.F.Schutz, Cambridge universitypress(1985)
4. Mathematical methods for physicists- G.B. Arfken and ,H.T.Weber General, thorough A.
Sommerfeld: Thermodynamics and Statistical Mechanics, Academic press,New
York, 1956. Good for traditional thermodynamics
Recommended Readings:
1. Classical Mechanics: H. Goldstein, C. Poole and J. Safko (2002) 3rd edition,Pearson
2. ClassicalDynamicsofParticlesandSystems:ThorntonandMarion(2003)Thomson
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Learning EMEA Ltd
3. Classical Mechanics: R.D. Gregory (2008) Cambridge UniversityPress
4. Mechanics: L.D. Landau and E.M. Lifshitz(2007)3rd edition,Butterworth-Heinemann
5. Classical Mechanics A Contemporary Approach: J.V. Jose and E.J. Saletan (2006)
Cambridge UniversityPress
SEMESTER II
Content:
Unit 1:Elemental Composition of Biomolecules; Properties of Water, hydrogen bonding and its
biochemical properties; Concept of pH, pKa and buffers; Basic structure and function of Biological
Macromolecules: Amino acids, Nucleotides and Monosaccharides, fatty acids (building blocks)
Proteins, Nucleic Acids, Carbohydrates and Lipids (polymers)
Unit 2: Cellular organization, Cell theory, cell types: prokaryotes vs. eukaryotes, single cell to multi-
cellular organism. Cell structures, beginning with the cell envelope of bacteria, plant and animal cells,
cell membranes and their properties and structure of the cellmembrane.
Unit 3: Cytoskeletal components: actin, microtubules and microfilaments and motor proteins. Cell
organelles, Cell nucleus and chromatin structure.
Unit 4: Fundamental processes: DNA replication, mitosis and meiosis, RNA, transcription and
translation.
Laboratory Course
Content: This practical course will cover biochemical, genetic and molecular basis of life. Practicals
include: Glucose estimation; Lipid estimation; Amino acid Paper chromatography; Protein estimation;
Enzyme assay and Kinetics; Human genetic traits and blood grouping; DNA isolation; DNA
estimation; Transformation; Plasmid isolation; Agarose gel electrophoresis; Restriction digestion and
Ligation; PCR demonstration; ATC PTC demonstration; Animal handling, inoculation, dissection.
Recommended Readings:
1. Biochemistry: D. Voet, and J.G. Voet (2010), 4th edition,Wiley
2. Harper's Illustrated Biochemistry: R. Murray, V. Rodwell, D. Bender, K.M. Botham, P.A.
Weil and P.J. Kennelly (2009) 28th edition, McGrawHill-Medical
3. Biology: N. Campbell and J. Reece (2005) 7th edition, Pearson, Benjamin,Cummings
4. Biology: P.H. Raven, G.B. Johnson, J.B. Losos and S.R. Singer (2005) 7th edition, McGraw
Hill
5. Molecular Biology of the Cell: B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts and P.
Walter (2007) 5th edition, GarlandScience.
Page 48
animals. Signal transduction- electrical signals, messengers and receptors. Plants forms and functions. Mitosis,
meiosis in plants and animals. Basics genetics of animals and plants.
Recommended Readings:
1. The world cell by Wayne M. BeckerAuthor.
2. Molecular cell biology by Harvey LodishAuthor
3. Human molecular genetics by Tom StrachanAuthor
4. Essential cell biology second edition by Bruce AlbertsAuthor
5. Essential Developmental Biology Second Edition by J M WSlack
IBS-201b: Biophysics I
Content: Order of magnitude physics applied to biology, molecular biophysics,cellular biophysics,
physics in development, and biophysical techniques with special emphasis on light in biology.
Laboratories will be conducted for measuring molecular thermodynamics of biological
macromolecules, quantifying cellular dynamics and measuring diffusion.
Recommended Readings:
1. Biological Physics: Energy, Information, Life: P. Nelson (2003) W.H.Freeman
2. Physical Biology of the Cell: R. Philips, J. Kondev and J. Theriot (2008) GarlandSciences
3. Biological Physics of the Developing Embryo: G. Forgacs (2005) Cambridge UniversityPress
Contents:
Chemical kinetics:Basic laws of kinetics, Experimental determinationof reaction order and rate, Study
of fast reactions, Simultaneous reactions, Temperature dependence of reaction rate, Mechanism of
chemicalreactions
Kinetic Theory of Gases: Maxwell's distribution of molecular velocities, collisionin a gas, mean free-
path, heat capacity of gases, Equi-partition of energy, viscosity, thermal conductivity Impact on
environmental science and astrophysics;
Thermodynamics: State and path functions, Internal Energy, Heat and Work, Lawsof thermodynamics,
Heat Capacity, Enthalpy, Entropy, Gibbs Free energy, Gibbs Helmholtz Equation, Chemical Potential,
Colligative properties; Chemical Bonding & Spectroscopy: Historical development, Schrödinger
equation andPostulates of Quantum Mechanics, Operators in Quantum Mechanics, Particle in a 1 D
Box to 3 Dimensional Box, Harmonic Oscillator, Hydrogen atom, Molecular Orbital Theory and
Valence Bond Theory, Applications in Spectroscopy.
Laboratory Course
Contents: Acid Base Titration using pH meter, Acid Base Titration usingconductivity method,
Potentiometric titrations, Heat of Neutralization, Kinetic Study of Ester hydrolysis, Activation
Parameter calculations, Colligative properties of Solutions, Optical Activity by Polarimetry, UV-VIS
Page 49
Spectrophotometry
Recommended Readings:
1. Physical Chemistry: G.M. Barrow (2007) 5th edition, Tata McGrawHill
2. Physical Chemistry: I.N. Levine (2002) 5th edition, Tata McGrawHill
3. Physical Chemistry: P.W. Atkins (2006) 8th edition, Oxford UniversityPress
4. Quantum Chemistry: D.A. McQuarrie (2003), VivaBooks
5. Quantum Chemistry: I.N. Levine (2007) 5th edition, Pearson Education
6. Chemical Kinetics: K.J. Laidler (1987) 3rd edition, PearsonEducation
7. Experiments in Physical Chemistry: C.W. Garland, J.W. Nibler and D.P. Shoemaker (2008)
8thedition, McGraw-Hill Science/Engineering/Math
8. Physical Chemistry: P. Atkins and J. de Paula (2006) 8th edition, W.H.Freeman
Page 50
differentiation, directional derivatives, total derivative, level surfaces, tangent planes, applications of
derivatives, Inverse function theorem, Lagrange multipliers, multiple integrals, line and surface
integrals, change of variables, applications of integrals, Stokes' Theorem, Green's Theorem.
Recommended Readings:
1. Calculus Vol. II: Multi variable calculus and linear algebra with applications to differential
equations and probability: T.M. Apostol (1969)Wiley
2. Calculus and Analytic Geometry: G.B. Thomas and R.L. Finney (1984) 6th/9th edition, Narosa or
Addison-Wesley orPearson
3. Calculus – Concepts and Contexts: J. Stewart (2004) 4th edition, BrookesCole
4. Principles of Mathematical Analysis: W. Rudin (1976) McGraw-Hill BookCompany
5. Functions of Several Real Variables: M. Moskowitz and F. Paliogiannis (2011) WorldScientific
Page 52
6. Theory of Elasticity: L.D. Landau and I.M. Lifschitz (2007) 3rd edition, Butterworth-
Heinemann
IBS-204a: Mathematical Physics-II
Functions of a complex variable – The derivative and Cauchy Reimann differential equations – Line
integrals of complex functions – Cauchy’s integral theorem - Cauchy’s integral formula – Taylor’s
series – Laurent’s series – Residues – Cauchy’s residue theorem – Singular points of an analytic
function – The point at infinity – Evaluation of residues – Evaluation of definite integrals by contour
integration - Method of steepest descent (Sterlings formula)- summation of series using residue
theorem. Definition of groups (eg.)– matrix groups- transformation groups- cosets- congugacy classes-
Lagrange theorem – invariant subgroup- factor group- homomorphismhomomorphism theorem-
isomorphism- direct product of groups. Fourier series – Dirichlet’s conditions – Fourier series of even
and odd functions –Complex form of Fourier series – Fourier integral and it’s complex form – Fourier
transforms – Fourier sine and cosine transforms – Convolution theorem and Parseval’s identity.
Laplace transform of elementary functions – Inverse Laplace transforms – Methods of finding Inverse
Laplace transforms – Heaviside expansion formula –Solutions of simple differentialequations.
Principle of equivalence (weak and strong) - Einstein – Hilbert action- Einstein equations from the
action- Newtonian limit of Einstein’s equations. Centrally symmetric gravitational fields.
Recommended Readings:
1. Mathematical methods in classical and quantum physics, T Dass & S KSharma
2. Mathematical methods for physicists- G F Arfkan &Weber
3. A first course in general relativity- B FSchutz
4. Classical theory of fields- L D Landau & E MLifshitz
SEMESTER III
Page 53
IBS-301: World of Biology III: Evolution and Ecology
Content:
Unit 1: Introduction: An overview of biological processes; Why study ecologyand evolution?
Unit 2: Population ecology: Survivorship curves, Life-tables, Simple population dynamics models and
their behavior, Spatial ecology.
Unit 3: Life history evolution: Basic concepts; Community ecology/ Species interaction: Competition;
Predation; Ecosystem dynamics: Food webs; biodiversity; conservation biology.
Unit 4: Classical Genetics: Mendel's laws, linkage; Population genetics: Hardy-Weinberg equilibrium;
mutation; selection; genetic drift; inbreeding. Macroevolution and diversity of life: Macroevolutionary
concepts: reproductive isolation, speciation.
Laboratory Course
Content: This practical course will cover basic concepts in ecology and evolution.Practicals include:
Evolution of Ethnocentrism; Isolation of organisms; Global Population Dynamics Database; Plant
Biodiversity field work; Growth curve (Factorial design 3 pH × 2 temperatures); Effect of nutritional
selection on bacterial growth; Chemical ecology and its impact on diatom diversity; Behavioral
Ecology.
Recommended Readings:
No single text book can be prescribed. The following books shall cover much of the proposed syllabus:
1. Ecology - From Individuals to Ecosystems: M. Begon, C.R. Townsend, and J.L. Harper (2005)
BlackwellPublishing
2. Ecology Concepts and Applications: M.C. Molles (2009) McGrawHill
3. Evolutionary Analysis: S. Freeman, and J. Herron (2004) 4th edition, W. PrenticeHall
IBS-301a: Biophysics II
Recommended Readings:
1. Mechanics of the Cell: D. Boal (2001) Cambridge UniversityPress
2. Physical Biology of the Cell: Philips, Kondev, Theriot & Orme (2009) Garland Science, Taylor
and Francis Group LLC.3
3. Biological Physics of the Developing Embryo: G. Forgacs and S. Newman (2005) Cambridge
UniversityPress
4. Biological Physics: P. Nelson (2007) W.H.Freeman
5. Biophysics: An Introduction: R. Glaser (2010, 2012)Springer
6. Life in Living Fluids: S. Vogel (1996) Princeton UniversityPress
7. Lehrbuch Der Biophysik: E. Sackmann and R. Merkel (2010) Wiley-VCH Verlag GmbH & Co
KGaA
IBS-301b: Neurobiology I
Page 54
Content: Evolution and organization of the nervous system; electrical properties of neurons; ionic
basis of membrane potentials and the action potential; synaptic transmission and neurotransmitters;
development of the nervous system; experience-dependent synaptic refining & plasticity; introduction
to Hebb's postulate and learning andmemory.
Recommended Readings:
1. Principles of Neural Science: E. Kandel et al. (2000) 4th edition, McGraw-HillMedical
2. Neuroscience: M. Bear et al. (2006) 3rd edition, Lippincott Williams &Wilkins
3. Development of the Nervous System: D. Sanes et al. (2005) 3rd edition, AcademicPress
4. Foundations of Cellular Neurophysiology: D. Johnston and S. Wu (1994) 1st edition, MIT
Press
Laboratory Course
Contents: Acid-base titrations relevant to the neutralizing power of antacids,conventional and
photochemical synthesis of coordination compounds, complexametric and spectroscopic estimation of
metal ion concentrations in coordination compounds, redox titration relevant to the iodine content in
common salts, synthesis of disinfectants containing main group compounds such as Alum, soaps
andmicelles.
Recommended Readings:
1. Inorganic Chemistry: Shriver and Atkins (2006) International Student Edition, 4th edition,
Oxford UniversityPress
2. Concepts and Models of Inorganic Chemistry: B. Douglous, D. McDaniel and J. Alexander
(2006) 3rd edition (student edition), Wiley-India
3. Inorganic Chemistry: J.E. Huheey, E.A. Keiter and R.L. Keiter (2007) 4thedition, Pearson
Education
4. Concise Inorganic Chemistry: J.D. Lee (1999) 5th edition, BlackwellScience
5. A Collection of Interesting General Chemistry Experiments: A.J. Elias (2007) Revised edition
Universities Press (India) Pvt. Ltd.
Page 55
pyrazole and imidazole. Preparation ofphosphole, benzaluminol. Synthesis and reactions of pyridine,
pyran, quinoline, isoquinoline, acridine and phenanthridine. Strain – bond angle and torsional strains
and their consequences in small ring heterocycles.
Recommended Readings:
1. Bansal R K, HeterocyclicChemistry.
2. Acheson R H, An introduction to the chemistry of Heterocycliccompounds.
3. Trivedi J J, Chemistry of HeterocyclicCompounds.
4. Gupta R R, Kumar M amd Gupta V, Heterocyclic Chemistry,Springner.
5. Eicher T and Hauptmann S, The Chemistry ofHeterocycles.
6. Joule J A, Mills K and Smith G F, HeterocyclicChemistry.
7. Gilchrist T L, HeterocyclicChemistry.
Contents: Definition and examples of fields, real and complex numbers, finitefields, vector spaces,
matrices, solution of a system of linear equations using elementary row and column operations and
related geometry, linear transformations, representations of linear transformations by matrices, linear
functionals, similarity (conjugacy) of matrices, determinants, invertible matrices, eigenvalues and
eigenvectors, characteristic and minimal polynomials, triangulation of matrices, diagonalization of
matrices, Cayley-Hamilton theorem.
Recommended Readings:
1. Linear Algebra: K. Hoffman and R. Kunze (2009)Prentice-Hall
Page 56
2. Basic linear algebra: T.S. Blith and E.F. Robertson (1998) UTMSpringer
3. Linear algebra problem book: P.R. Halmos (1995)MAA
4. Introduction to Linear Algebra: G. Strang (2009) Wellesley CambridgePress
5. Linear Algebra: G. Shilov (1977)Dover.
Recommended Readings:
1. Review of Laplace transform, Laplace transform of periodic functions, Initial and Final value
Theorems, Inverse Laplace transform.
2. David K.Cheng; “Analysis of Linear System”, Addision Welsley PublishingCompany.
3. ME Van-Valkenberg; “Network Analysis”, Prentice Hall of India
4. Donald E.Scott,”An Introduction to circuit Analysis”, Mc Graw Hill, InternationalEdition.
5. Choudhary, D.Roy, “Network & Systems”, Wiley EasternLtd.,India.
Introduction, State space representation of linear systems, transfer function and state variables.
Recommended Readings:
1. Review of Laplace transform, Laplace transform of periodic functions, Initial and Final value
Theorems, Inverse Laplace transform.
2. David K.Cheng; “Analysis of Linear System”, Addision Welsley PublishingCompany.
3. ME Van-Valkenberg; “Network Analysis”, Prentice Hall of India
4. Donald E.Scott,”An Introduction to circuit Analysis”, Mc Graw Hill, InternationalEdition.
5. Choudhary, D.Roy, “Network & Systems”, Wiley EasternLtd.,India.
Contents: Electrostatics, Coulomb's law, Gauss's law and its applications, methodof images,
magnetostatics, electric fields in matter, dielectrics, polarisation, magnetic fields in matter, magnetic
materials, Biot-Savart law, Ampere's law, Faraday's law, Lorentz force law, displacement current,
Maxwell equations, plane electromagnetic waves, polarised light
Laboratory Course
Contents: Thermal expansion of solids, thermal conductivity by Lee's method,specific heat of solids,
Stefan's law of radiation, temperature dependence of a thermistor, resolving power of a telescope,
Newton's rings, Malus's Law.
Recommended Readings:
1. Electricity and Magnetism: E.M. Purcell (2008) Berkeley Physics Course, Vol 2, Tata McGraw-
HillLtd
Page 57
2. Feynman Lectures on Physics: R.P. Feynman, R.B. Leighton and M. Sands (2011) The
Millenium edition, Vol 2, BasicBooks
3. Introduction to Electrodynamics: D.J. Griffths (2012) PearsonEducation
IBS-304b: Nanotechnology
Basic concepts of Nanoscience and Nanotechnology – Quantum wire – Quantum well – Quantum dot
– fullerenes – Graphene – Carbon nanotubes – Material processing by chemical vapor deposition and
physical vapor deposition –Principle of SEM, TEM, AFM, Scanning near-field optical microscopy
(SNOM) –Scanning ion-conducting microscopy (SCIM) – Potential uses of nanomaterials in
electronics, robotics, computers, sensors, sports equipment, mobile electronicdevices, vehicles and
transportation – Medical applications ofnanomaterials.
Recommended Readings:
1. Cao G., “Nanostructures and Nanomaterials: Synthesis, Properties and Applications”,
Imperial College Press,2004.
2. T.Pradeep, “A Text Book of Nanoscience and Nanotechnology”, Tata McGraw Hill, New
Delhi,2012.
SEMESTER IV
Page 58
Content: Introduction to complex systems; Emergent properties and evolution of biological
complexity; Signal transduction; Gene regulation and gene regulatory networks; Network motifs;
Fertilization and organismal development; Pattern formation; Reaction-diffusion; Evolution of body
plans; Regeneration and stem cells; Physiology and models of the immune system; Physiology and
models of the nervous system; Oscillation in biology.
Recommended Readings:
1. Molecular Biology of the Cell: B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts and P.
Walter (2002) 4th edition, GarlandScience
2. PrinciplesofDevelopment:L.Wolpert,J.Smith,T.Jessell,P.Lawrence,E.Robertsonand
E. Meyerowitz (2006) 3rd edition, Oxford University Press
3. An Introduction to Systems Biology: Design Principles of Biological Circuits: U. Alon
(2006) 1st edition, Chapman &Hall/CRC
4. Mathematical Biology: J.D. Murray (2007) Vol. I. 3rd edition,Springer
IBS-401a: Vaccine
Conventional vaccines -killed and attenuated, modern vaccines—recombinant proteins, subunits,
DNA vaccines, peptides, immunomodulators (cytokines), vaccine delivery and adjuvants, large scale
manufacturing. Interferons, designing and screening for antivirals, mechanisms of action, antiviral
libraries, antiretrovirals—mechanism of action and drug resistance.
Recommended Readings:
1. Antiviral Agents, Vaccines, and Immunotherapies. Stephen K. Tyring. Latest edition / Pub.
Date: October 2004. Publisher: MarcelDekker.
2. Antiviral Drug Discovery for Emerging Diseases and Bioterrorism Threats. Paul F. Torrence
(Editor). Latest edition / Pub. Date: July 2005. Publisher: Wiley, John & Sons,Incorporated.
3. Chimeric Virus -like Particles as Vacc ines. Wolfram H. Gerlich (Editor), Detlev H. Krueger
(Editor), Rainer Ulrich (Editor). Latest edition / Pub. Date: November 1996 Publisher: Karger,
S.Inc.
4. Vaccines. Stanley A. Plotkin, Walter A. Orenstein. Latest edition / Pub. Date: September 2003.
Publisher: Elsevier HealthSciences.
IBS-401b: Neurobiology II
Content: Autonomous nervous system; Sensory systems and sensory processing;Motor control and
pattern generators; Brain imaging: electro-encephalography, positron emission tomography, functional
magnetic resonance imaging; Sleep and circadian rhythms; Processing of emotion; Learning and
memory; Neurobiology of perception and cognition; astrocyte and glial feedback; Current topics:
mirror neurons, neurodegeneration.
Recommended Readings:
1. Principles of Neural Science: E. Kandel et al. (2000) 4th edition, McGraw-HillMedical
2. Neuroscience: M. Bear et al. (2006) 3rd edition, Lippincott Williams &Wilkins
Page 59
3. Foundations of Cellular Neurophysiology: D. Johnston and S. Wu(1994)
4. 1st edition, MITPress
5. The Other Brain: D. Fields (2009) 1st edition, Simon andSchuster
6. Mathematical Physiology I: J. Keener and J. Sneyd (2008) 2nd edition,Springer
7. Neuroscience: D. Purves et al. (2011) 5th edition, SinauerAssociates
Laboratory Course
Contents: Functional group analysis, classical name reactions and oxidation,reduction, cycloaddition,
aromatic electrophilic substitution reactions, isolation of natural products and synthesis of fluorescent
compounds, purification techniques such as recrystallization and column chromatography
Recommended Readings:
1. Organic Chemistry: J. Clayden, N. Greeves, S. Warren and P. Wothers (2000) 1stedition,
Oxford UniversityPress
2. Organic Chemistry: T.W.G. Solomons, 2nd or 3rd edition, John Wiley &Sons
3. March's Advanced Organic Chemistry: M. Smith and J. March, 5th or 6th edition, Wiley-
Interscience
Page 60
density, influence of branching on the melt, viscosity, rheological and thermal properties of polymers
Recommended Readings:
1. Principles of Polymerization: G. Odian (2004) 4th edition,Wiley
2. Text Book of Polymer Science: F.W. Billmeyer Jr. (1984) 3rd edition, John Wiley &Sons
3. Polymers: Chemistry and Physics of Modern Materials: J.M.G. Cowie (2007) 3rd edition,
CRCPress
4. Review and research articles, communications and notes published in international journals
(will beprovided)
Contents: Basic concepts of acidity, basicity, and pKa; Equilibria, kinetics andmechanisms;
Rearrangements; Radical Reactions; Mechanisms in Biological Chemistry; Advanced Molecular
Orbital Theory; Sterochemistry and conformational analysis; Thermal pericyclic reactions;
Sigmatropic and electrocyclic reactions; Synthesis and Reactions of carbenes.
Recommended Readings:
1. Organic Chemistry: J. Clayden, N. Greeves, S. Warren and P. Wothers (2000) 1stedition, Oxford
UniversityPress
2. Modern Physical Organic Chemistry: E. Anslyn and D.A. Dougherty (2006) 1st edition,
University ScienceBooks
3. Advanced Organic Chemistry: Part A: Structure and Mechanism: R.J. Sundberg and F.A. Carey
(2000) 4th edition, Kluwer/Plenum Press
4. Physical Organic Chemistry: N. Isaacs (1995) 2nd edition,Addison-Wesley-Longman
Contents: Organization of Data, Measures of central tendency and dispersion,Graphs and Charts,
Histogram, Box plot, Axiomatic definition of Probability, Conditional Probability and Independence,
Bayes' theorem, Random Variables, Cumulative Distribution Function, probability mass function,
probability density function, Some standard discrete and continuous random variables, Mathematical
expectation, moments, moment generating function, Chebychev's and Markov's inequality, Functions
of random variables and their distributions, Random vectors, Joint, marginal and conditional
distributions, Independence of random variables, Law of large numbers, Central limit theorem,
Sampling distributions.
Recommended Readings:
1. An Introduction to Probability and Statistics: V.K. Rohatgi, A.K.Md.E. Saleh (2000) Wiley-
Interscience
2. A First Course in Statistics: S. Ross, PrenticeHall
3. Introduction to Probability Theory and Its Applications, Vol 1: W. Feller (1968)Wiley
4. Statistical Inference: G. Casella and R.L. Berger (2001)Duxbury
5. Parametric Inference: B.K. Kale (1999)Narosa
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IBS-403a: Dynamics of rigid bodies
Position, velocity, acceleration, straight line motion, Acceleration as a function of time, position, or
velocity. Introduction, Rotation, Absolute Motion, Relative Velocity, Instantaneous Center of Zero
Velocity, Relative Acceleration, Motion Relative to Rotating Axes.
Recommended Readings:
1. F. P. Beer and E. R. Johnston, Vector Mechanics for Engineers, Vol I - Statics, Vol II Dynamics, 9th
Ed, Tata McGraw Hill,2011.
2. J. L. Meriam and L. G. Kraige, Engineering Mechanics, Vol I Statics, Vol IIDynamics, 6th Ed, John
Wiley, 2008.
3. R. C. Hibbeler, Engineering Mechanics: Principles of Statics and Dynamics, Pearson Press,2006.
4. I.H. Shames, Engineering Mechanics: Statics and dynamics, 4th Ed,PHI,2002.
Contents: Historical background, discrete spectra, wave-particle duality, wave packets, uncertainty
principle, postulates of quantum mechanics, Schroedinger equation, expectation values, particle in a
box, potential well and barrier in one dimension, Hydrogenatom
Laboratory Course
Contents: Photo-electric effect, Cornu's method to determine Young's modulus,e/m by Thomson's
method Rydberg's Constant, Millikan's oil drop Methods, G-M Counter Characteristics, Constant
Deviation spectrometer, Michelson interferometer.
Recommended Readings:
1. Quantum Physics: S. Gasiorowicz (2003) 3rd edition, Wiley IndiaEdition
2. Quantum Physics: E.H. Wichman (2008) Berkeley Physics Course, Vol 4, Tata McGraw-Hill
Ltd
3. Quantum Physics of Atoms, Molecules, Solids, Nuclei and Particles: R. Eisberg and R.
Resnick, 2nd edition, John Wiley andSons
4. Quantum Mechanics: C. Cohen-Tannoudji, B. Diu and F. Laloe (1977) Vol 1, Wiley-
Interscience
5. Advanced Practical Physics: B.L. Worsnop and H.T. Flint, Asia PublishingHouse
6. Analytical Experimental Physics: Michael Ference Jr., Harvey B. Lemon, Reginald J.
Stephenson (1970) University of ChicagoPress
7. The Art of Experimental Physics: D.W. Preston and E.R. Dietz (1991) JohnWiley
Page 62
coupling schemes, emission and absorption of electromagnetic radiation by atoms, transition
probabilities and selection rules, induced and spontaneous emission, Einstein coefficients, broadening
of spectral lines, continuous absorption and emission spectra, rotation and vibration spectra of
molecules, experimental techniques, optical cooling and trapping of atoms, atom interferometer,
quantum measurement and decoherence, THzspectroscopy.
Recommended Readings:
1. Physics of Atoms and Quanta: H. Haken and H.C. Wolf (2005)Springer
2. Physics of Atoms and Molecules: B.H. Bransden and C.J. Joachain (2003) Pearson Education
India
3. Atoms, Molecules and Photons: W. Demtroder (2010)Springer
IBS-404b: Electromagnetism
Sources and effects of electromagnetic fields – Vector fields – Different co-ordinate systems- vector calculus
– Gradient, Divergence and Curl - Divergence theorem – Stoke’s theorem. Coulomb’s Law – Electric field
intensity – Field due to point and continuous charges – Gauss’s law and application – Electric potential
– Electric field and equipotential plots – Electric field in free space, conductors, dielectric
-Dielectric polarization - Dielectric strength - Electric field in multiple dielectrics – Boundary
conditions, Poisson’s and Laplace’s equations – Capacitance- Energy density. Lorentz Law of force,
magnetic field intensity – Biot–savart Law - Ampere’s Law – Magnetic field due to straight
conductors, circular loop, infinite sheet of current – Magnetic flux density (B) – B in free space,
conductor, magnetic materials – Magnetization – Magnetic field in multiple media – Boundary
conditions – Scalar and vector potential – Magnetic force – Torque – Inductance – Energy density –
Magnetic circuits. Faraday’s laws, induced emf – Transformer and motional EMF – Forces and Energy
in quasistationary Electromagnetic Fields - Maxwell’s equations (differential and integral forms) –
Displacementcurrent.
Recommended Readings:
SEMESTER V
IBS-501: Animal Physiology I
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Content: Skeletal and smooth muscle systems, human cardio-vascular system and blood, excretion
and regulation of the body fluids, gaseous exchange, transport and tissue respiration, physiology of
digestion and gastrointestinal hormones, endocrines and reproduction.
Recommended Readings:
1. Textbook of Medical Physiology: A.C. Guyton, J.C. Hall (2008)Elsevier-Saunders
2. Williams Textbook of Endocrinology: H.M. Kronenberg et al. (2008)Saunders
3. Eckert Animal Physiology: D.J. Randall et al. (2002) W.H.Freeman
4. Comparative Animal Physiology: P.C. Withers et al. (2001) BrooksCole
5. Animal Physiology: R.W. Hill, G.A. Wyse and M. Anderson (2008) SinauerAssociates
Content: This course covers a detailed analysis of the molecular mechanisms thatcontrol the
maintenance, expression, and evolution of prokaryotic and eukaryotic genomes. The topics covered in
lectures and readings of relevant literature include maintenance and expression of the genome
including DNA replication, mutability and repair of DNA, genetic recombination, gene regulation,
transcription, RNA splicing and translation. In particular, the logic of experimental design and data
analysis is emphasized in particular molecular cloning methods and tools for studying gene and gene
activity.
Recommended Readings:
1. Molecular Biology of the Gene: J.D. Watson, T.A. Baker, S.P. Bell, A.A.F. Gann, M. Levine
and R.M. Losick (2007) 7th edition, BenjaminCummings
2. Molecular Biology: Weaver (2011) 5th edition, McGraw-HillScience
3. Principles of Gene Manipulation: S.B. Primrose, R. Twyman and R.W. Old (2002) 6th
edition,Wiley-Blackwell
4. Molecular Biology and Genomics: C. Mulhardt (2006) 1st edition, AcademicPress
Content: This course covers a wide range of advanced cell biology topicsdiscussing in some detail
membrane structure, transport, intracellular compartments, protein sorting and vesicular traffic. It will
also discuss the cell cycle and cell division. Finally we will be looking at mechanisms of cell
communications, cell junctions and adhesion to the extracellular matrix, looking at the role and
regulation of the cytoskeleton and motor proteins and also see how many of these process work
together to drive cell migration. This course will also provide an introduction to the types and role of
mechanical forces incells.
Recommended Readings:
1. Molecular Biology of the Cell: B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts and P.
Walter (2007) 5th edition, GarlandScience
2. Molecular Biology of the Gene: James Watson et al., (2007) 6th edition, BenjaminCummings
3. Molecular Cell Biology: H. Lodish, A. Berk, C.A. Kaiser et al (2007) 6thedition, W.H. Freeman
Reviews recommended on the coursewebsite.
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IBS-504: Biostatistics
Content: Scales and variables; Descriptive statistics: population and sample,frequency distributions,
probability distributions, binomial, poisson and Gaussian distributions; Distribution of sample means,
standards errors, confidence intervals; Concept of hypothesis testing, null hypothesis, statistical
significance, type 1 type 2 errors; T tests, Anova, factorial design, Regression and correlation, Non-
parametric statistics; Introduction to multivariate tools; Sampling design; Case studies.
Recommended Readings:
1. Biometry: The Principles and Practice of Statistics for Biological Research: R.R. Sokal and H.A.
Rohlf (1995) 3rd edition, W.H.Freeman
2. Biostatistical Analysis: J.H. Zar (1998) 4th edition, PrenticeHall
Recommended Readings:
1. Principles of Animal Behaviour: L.A. Dugatkin (2004) W.W. Norton &Co
2. An Introduction to Behavioural Ecology: J.R. Krebs and N.B. Davies (1993) Blackwell
Publishing
3. Animal Behaviour: J. Alcock (2009) SinauerAssociates
The larger objective of this course is to encourage students to participate in ongoing research at BBAU.
This may be in the form of a reading/literature review/theoretical and computational project/lab based
research project.
The student has to identify, talk to and mutually agree on a research project with a faculty member
before registering for this course. The scope, duration, structure, expectations, and evaluation criteria
for the course are decided by the project supervisor.
Contents: The student has to identify, talk to and mutually agree on a research project with the faculty
member before registering for this course. The scope, duration, structure, expectations, and evaluation
criteria (also see below) for the course are decided by the project supervisor.
Page 65
Contents: Separation of ternary quantitative analysis of organic compounds.Electrophilic aromatic
substitution reactions: Synthesis of methyl orange (organic dye); Name reactions and rearrangements:
Wittig reaction, Beckmann rearrangement: Acetanilide from Acetophenone Oxime; Multi step
synthesis: Synthesis of substituted Flavones and characterization of the diketo intermediates and
flavones derivatives; Photochemical reaction: Photochemical reaction: Synthesis of benzopinacol from
benzophenone using sunlight; Thermal pericyclic reactions: Diels alder reaction: anthracene and
maleic anhydride; Cupper(I) mediated cycloaddition reaction: Click reaction: Azide and alkyne
coupling reaction; Organometallic reactions: Palladium catalyzed cross- coupling reaction:
Stereochemistry: Addition of Bromine to trans-cinnamicacid.
Recommended Readings:
1. Experimental procedures will be provided from currentliterature
2. A Collection of Interesting General Chemistry Experiments: A.J. Elias (2007) Revised
Edition, UniversitiesPress
3. Comprehensive Practical Organic Chemistry: V.K. Ahluwalia and R. Aggarwal (2001)
Illustrated edition, UniversitiesPress
4. Vogel's Textbook of Practical Organic Chemistry: 5th edition, PrenticeHall
Contents: Symmetry elements and operations, Schönflies notationof point group,prediction of dipole
moment and optical activity from the viewpoint of symmetry, definition of group, subgroup and class,
matrix representation of a point group, reducible and irreducible representations, great orthogonality
theorem and its corollaries, construction of character tables and meaning of all the terms in a character
table, Mulliken symbols for irreducible representations, direct product of irreducible representations,
application of symmetry to quantum mechanics, application of symmetry to spectroscopy – electronic,
IR and Raman selection rules, projection operator and its application to symmetry adapted linear
combinations, construction of molecular orbital correlation diagram of simple and complex molecules,
Hückel π molecular orbital of a conjugatedsystem.
Recommended Readings:
1. Chemical Applications of Group Theory: F.A. Cotton (1963) 1st edition, WileyInterscience
2. Molecular Symmetry and Group Theory: R.L. Carter (1997) John Wiley &Sons
3. Symmetry and Spectroscopy: D.C. Harris and M.D. Bertolucci (1989) DoverPublications
4. Group Theory and Quantum Mechanics: M. Tinkham (2003) DoverPublications
Contents: Theories of bonding, acids and bases, thermodynamic acidityparameters; hydrogen and
classical hydrogen bond, water, hydrates, hydrogen ions, metal hydrides, activation of hydrogen
complexes; alkali metals in liquid ammonia; boron, boranes, carboranes, borazines and borates;
allotropy of carbon; silane and polysilanes, silicone Polymers, silicates; compounds of nitrogen,
activation of nitrogen, nitrogen fixation, hydrogen, halogen, oxygen and nitrogen compounds of
phosphorous; oxygen and singlet oxygen, ozone, complexes of molecular oxygen; N-S compounds;
sulphides, oxides and oxoacids of sulphur, chalcogenides and polychalcogenides; halogens,
Page 66
polyhalides, interhalogen compounds, charge-transfer complexes of Halogens; Compounds of Xenon
and other noble gases; Zintl compounds and homometallic clusters; elemental and compound
semiconductors; energy, polarity, and reactivity of M-C bond; organometallic chemistry of the main
group elements.
Recommended Readings:
1. Advanced Inorganic Chemistry: F.A. Cotton, G. Wilkinson,C.A.
2. Murillo and M. Bochmann (1999) 6th edition,Wiley-Interscience
3. Chemistry of the Elements: A. Earnshaw and N. Greenwood (1997) 2ndedition,
Butterworth-Heinemann
4. Inorganic Chemistry: D. Shriver and P. Atkins (2006) International Student Edition, 4th
edition, Oxford UniversityPress
5. Inorganic Chemistry: J.E. Huheey, E.A. Keiter, and R.L. Keiter; Modified by O.K. Medhi
(2007) 4th edition, Pearson EducationInc.
Recommended Readings:
1. Selected Topics covered in Comprehensive Supramolecular Chemistry, Volume8
2. Core concepts in Supramolecular chemistry and Nano-chemistry: Authors; J.W.Steed
3. Supramolecular Chemistry: Fundamentals and Applications: Advanced Text book: Authors:
KatsuhikoAriga
4. Introduction to Soft mater: Synthetic and Biological Self-Assembling Materials: Authors: Ian W.
Hamley
5. Review and research articles, communications and notes published in international journals (will
beprovided)
Contents: Thermodynamics, diffusion rates, mass transfer etc. Solvent extraction,distillations, liquid-
liquid extraction and other methods of separation. Types of Chromatography: GC, HPLC, hyphenated
techniques. Electrophoresis, centrifugation DNA/Protein separations / purifications. Green Separation
process separation using zeolite and polymer membranes. Chiral separations, molecular recognition,
molecule imprinting and polymer separations.
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Recommended Readings:
1. An Introduction to Separation Science: B.L. Karger, L.R. Snyder and C. Horvath (1973)
2ndedition, John Wiley &Sons
2. Handbook of Separation Process Technology: R.W. Rousseau (1987) 1st edition, John Wiley
&Sons
3. Separation Process Principles: J.D. Seader and E.J. Henley (2005) 2ndEdition, John Wiley &
Sons
The larger objective of this course is to encourage students to participate in ongoing research at BBAU.
This may be in the form of a reading/literature review/theoretical and computational project/lab based
research project.
The student has to identify, talk to and mutually agree on a research project with a faculty member
before registering for this course. The scope, duration, structure, expectations, and evaluation criteria
for the course are decided by the project supervisor.
Recommended Readings:
1. Abstract Algebra: D.S. Dummit and R.M. Foote (1999)Wiley
2. Topics in Algebra: I.N. Herstein (1975) Wiley
3. Algebra: M. Artin (1991) PrenticeHall
4. Problems in Group Theory: J. Dixon (2007)Dover
5. Group Theory Selected Problems: B. Sury (2004) UniversitiesPress
6. Groups and Symmetry: Armstrong (1987) UTMSpringer
7. An Introduction to the Theory of Groups: J.J. Rotman (1994)Springer
8. Symmetries: D.L. Johnson (2004) SUMSSpringer
Recommended Readings:
1. Geometry: R. Fenn (2000) SUMSSpringer
2. The Poincare Half Plane: A Gateway to Modern Geometry: S. Stahl (1993) Jones &Bartlett
3. Hyperbolic Geometry: J.W. Anderson (2007) SUMSSpringer
4. Geometry: M. Audin (2003) UniversitextSpringer
5. Curved Spaces: P.M.H. Wilson (2008) Cambridge UniversityPress
6. Geometry Euclid and beyond: R. Hartshorne (2010)Springer
7. The Four Pillars of Geometry: J. Stillwell (2005)Springer
8. Introduction to Geometry: H.S.M. Coxeter (1989)Wiley
9. Course in Modern Geometries: J.N. Cederberg (2001)Springer
10. Geometry of Surfaces: J. Stillwell (2007) UniversitextSpringer
IBS-515: Analysis
Contents: Construction of Real numbers: Cauchy sequences, construction, leastupper bound property.
Limits of sequences: convergence, suprema and infima, limsup, liminf, limit points, subsequences.
Series: infinite series, rearrangement of series, tests for convergence. Infinite sets: countability,
uncountable sets, axiom of choice. Functions on R: continuous functions, left and right limits,
maximum principle, intermediate value theorem, uniform continuity. Differentiation: definitions, local
maxima and minima, L'Hopital rule. Riemann integration: basic properties, Riemann integrability of
continuous functions, non-Riemann integrable functions, Riemann-Stieltjes integral, fundamental
theorems of Calculus. Uniform convergence: point-wise and uniform convergence, uniform
convergence and continuity, Weierstrass M-test, uniform convergence and integration, uniform
convergence and derivation. Introduction to Power series and Fourier series.
Recommended Readings:
1. Analysis I & II: T. Tao, TRIM series (2006) Hindustan BookAgency
2. Principles of Mathematical Analysis: W. Rudin (1976) Tata McGrawHill
3. A Course of Pure Mathematics Centenary edition: G.H. Hardy and T.W. Korner (2008)
Cambridge MathematicalLibrary
4. Mathematical Analysis: T.M. Apostol (1974)Addison-Wesley
5. A first course in Real Analysis: S.K. Berberian (1994) UTMSpringer
6. Metric Spaces: M. Searcoid (2006) UTMSpringer
7. Metric Spaces: E.T. Copson (1968) Cambridge UniversityPress
IBS-516:Topics in Algebra
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Simple groups and solvable groups, nilpotent groups, simplicity of alternating groups, composition
series, Jordan-Holder Theorem. Semidirect products. Free groups, free abelian groups. Rings,
Examples (including polynomial rings, formal power series rings, matrix rings and group rings), ideals,
prime and maximal ideals, rings of fractions, Chinese Remainder Theorem for pairwise comaximal
ideals. Euclidean Domains, Principal Ideal Domains and Unique Factorizations Domains. Poly-nomial
rings over UFD's. Fields, Characteristic and prime subfields, Field extensions, Finite, algebraic and
finitely generated field extensions, Classical ruler and compass constructions, Splitting fields and
normal extensions, algebraic closures. Finite fields, Cyclotomic fields, Separable and inseparable
extensions.Galois groups, Fundamental Theorem of Galois Theory, Composite extensions, Examples
(including cyclotomic extensions and extensions of finite fields).
Recommended Readings:
1. M. Artin, Algebra, Prentice Hall of India,1994.
2. D.S. Dummit and R. M. Foote, Abstract Algebra, 2nd Ed., John Wiley,2002.
4. N. Jacobson, Basic Algebra I, 2nd Ed., Hindustan Publishing Co., 1984, W.H. Freeman,
1985.
Basic properties of a topology, open sets, closed sets, covers, continuous maps. Connectedness, Hausdorff
property, local compactness, compactness, paracompactness
Recommended Readings:
1. J.R. Munkres,Topology
Set theory - Operations - union, intersection, complement, difference, DeMorgan's Laws Subsets,
power sets, Venn diagrams, Equal vs. equivalent sets, Countability, Sets of numbers (integers, reals,
etc.) Cartesian products, Proof by Contadiction, History - Cantor, Mandelbrot, Descartes,Venn.
Relations and functions-Symmetry, transitivity, reflexivity, Equivalence classes, Congruence,
partitions, domain, range, co-domain, One-to-one, onto, inverse, Modular numbers, History
Pythagorean relationship, Descartes
Recommended Readings:
Page 70
1. Scheinerman, Edward, Mathematics: A Discrete Introduction, 2006,Cengage.
2. Roman, Steven. An Introduction to Discrete Mathematics, 2nd edition, Saunders,NY.
3. Rosen, Kenneth h. Discrete Mathematics and Its Applications, 2 ed,McGraw/Hill
4. Barnett, Steven. Discrete Mathematics, Addison Wesley, Reading, MA (Accessory resource
for numberbases)
5. Dossey, John A. et al, Discrete Mathematics, 3rd edition, Addison-Wesley, Reading,MA.
6. Johnsonbaugh, Richard, Essential Discrete Mathematics, MacMillan Publishing Co., NY.
2005
Recommended Readings:
1. Mathematical Methods for Physicists: G. Arfken and H. Weber (2012) 7th edition, Academic
Press
2. Fundamentals of Complex Analysis: E.B. Staff and A.D. Snider (2008) Dorling Kinderley
(India)Ltd
3. Ordinary Differential Equations: G. Birkhoff and G.C. Rota (1989) 4th edition, WileyIndia
4. Differential Equations with Applications and Historical Notes: G. Simmons (2003) Tata McGraw
Hill
5. Linear Partial Differential Equations for Scientists and Engineers: Tyn Myint-U and Lokenath
Debnath (2006) 4th edition,Birkhauser
Contents: Electromagnetic processes, thermal and synchrotron emission, spectrallines; stellar physics:
structure, composition, evolution; active galactic nuclei, radio galaxies, quasars, galaxies and galaxy
clusters, galaxy structure and composition; X-ray clusters, cluster radio sources; dark matter,
gravitational lensing, rotation curves; cosmology, big bang model, cosmic microwave background,
reionisation. Other topics (time permitting): pulsars, extra solar planets,telescopes.
Recommended Readings:
1. Galaxies in the Universe: An Introduction: L.S. Sparke and J.S. Gallagher III (2000)
Cambridge UniversityPress
2. Galactic and Extragalactic Radio Astronomy: G.L. Verschuur and K.I. Kellermann (1988)
Springer-Verlag
3. The Physics of Stars (Manchester Physics Series): A.C. Phillips (1999) John Wiley &Sons.
Contents: Error analysis and the value of "zero" in experimental physics,measurement of noise and
analysis of noise, electrical measurements and precautions: I-V, C-V, resistivity.Magnetic
Page 71
measurements and precautions: vibrating sample magnetometer, SQUID;Vacuum techniques: units,
gauges, pumps, materials;Techniques of temperature measurements: very low, medium and very high
- temperaturethermometers, thermocouples, thermistors, pyrometer, spectroscopy etc; Thin film
deposition methods: physical, e-beam, sputter, chemical vapor deposition, molecular beam epitaxy,
spin coatings, dip coating, electroplating, electroless plating etc; Techniques of optical spectroscopy
and optoelectronic devices: UV-Vis absorption, photoluminescence, electroluminescence, light-
emitting diodes, solar cells; Advanced experimental techniques: AFM, atomic and molecular traps,
superconductivity, astronomy, NMR, nano-materials and devices, time-resolved measurementsetc.
Recommended Readings:
1. Practical Physics: G.L. Squires (2001) 4th edition, Cambridge UniversityPress
2. Astronomical Optics: D.J. Schroeder (1999) 2nd edition, AcademicPress
3. Experimental Physics: R.A. Dunlap (1988) 1st edition, Oxford University ,press
4. Characterization of Materials: J.B. Wachtman and Z.H. Kalman (1992) Butterworth-
Heinemann
IBS-522: Electrodynamics
Contents: Maxwell's equations, conservation laws, electromagnetic waves invacuum and in matter,
absorption and dispersion, guided waves, dipole radiation, scalar and vector potentials, gauge
transformations, relativistic electrodynamics, electromagnetic field tensor, covariant formulation of
Maxwell's equations.
Recommended Readings:
1. Introduction to Electrodynamics: D.J. Griffths (2012) PearsonEducation
2. Modern Electrodynamics: A. Zangwill (2013) Cambridge UniversityPress
3. Feynman Lectures on Physics: R.P. Feynman, R.B. Leighton and M. Sands (2011) The
Millenium edition, Vol 2, Basic Books
4. Electrodynamics of Continuous Media: L.D. Landau and E.M. Lifshitz (2007) 3rd edition,
Butterworth-Heinemann
Contents: Skin depth measurement, Generation and transmission ofelectromagnetic waves (Lecher
Wire). Magnetic susceptibility measurement (Quincke's method), Magnetic Susceptibility
measurement by Gouy's method , B-H hysteresis, Hall effect, Diode and Transistor characteristics,
Field Effect Transistor, Operational amplifiers, Solar cell (IV characteristics ), Faraday effect
Recommended Readings:
1. Advanced Practical Physics: B.L. Worsnop and H.T. Flint, Asia PublishingHouse
2. Analytical Experimental Physics: M. Ference Jr., H.B. Lemon and R.J. Stephenson (1970)
University of ChicagoPress
3. The Art of Experimental Physics: D.W. Preston and E.R. Dietz (1991) JohnWiley
4. The Art of Electronics: P. Horowitz and W. Hill (1989) 2nd edition, Cambridge UniversityPress.
SEMESTER VI
Content: Introduction to land plants, evolutionary history of plants; plant cell andplasmodesmata,
tissue organization; photosynthesis- light and dark reactions, molecular mechanisms, ecological
considerations; respiration; lipid metabolism; water transport and mineral nutrition; translocation in
the phloem, macromolecular (RNA/Protein) transport, transporter genes; plant hormones (biogenesis
and mode of actions); plant growth and development, embryogenesis, pattern formation, stem cells &
Shoot Apical Meristem (SAM) architecture; the control of flowering, ABC models, molecular
mechanisms; photoreceptors and light control of plant development.
Recommended Readings:
1. Plant Physiology: L. Taiz and E. Zeiger (2010) 5th edition, Sinauer AssociatesInc
2. Biochemistry and Molecular Biology of Plants: B. Buchanon et. al. (2002) American Society of
Plant Physiologists(ASPP)
3. Physiology and Behavior of Plants: P. Scott (2008) 1st edition, WileyPublishers
4. Plant Biochemistry: H.W. Heldt and B. Piechulla (2010) 4th edition, WileyPublishers
IBS-602: Immunology I
Recommended Readings:
1. Janeway's Immunobiology: K.M. Murphy, P. Travers and M. Walport (2007) 7th edition,
GarlandScience
2. Kuby Immunology: T.J. Kindt, B.A. Osborne and R.A. Goldsby (2006) 6thedition, W.H.
Freeman
Content: Water and life; Biomolecules: Structural and functional aspects ofproteins, nucleic acids and
carbohydrates; Nucleic acids: Structure and function, RNA world, ribozymes, DNA as the
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genetic information carrier; Protein folding, dynamics and interaction: Thermodynamic principles,
binding and protein folding reactions analyzed from the framework of enthalpy, entropy, free-energy
and heat capacity. Enzyme biochemistry: Enzymes as biological catalysts, kinetics of unireactant
systems, inhibition systems, enzyme activation, multisite and allosteric enzymes; Carbohydrates:
Structure and function; Biochemical techniques: Protein and nucleic acid isolation, electrophoresis,
chromatography, mass spectrometry, isothermal titration calorimetry and isotope exchange.
Recommended Readings:
1. Biochemistry: D. Voet and J.G. Voet (2010/2004), 4th/3rd edition,Wiley
2. Biochemistry:Thechemicalreactionsoflivingcells:D.E.Metzler(2003)VolumesI&II,2nd
edition, Academic Press
IBS-604: Epigenetics
Content: In this course I will begin with the fundamentals of regulation of geneexpression and
chromatin organization (6 lectures) and then discuss emerging concepts of how DNA sequence can
dictate chromatin organization at the domain level (6 lectures), with specific emphasis on regulatory
elements such as boundary elements and insulators (6 lectures). The implications of these in
development, differentiation and disease will be discussed using specific examples (12 lectures).
Recommended Readings:
1. Histone variants – ancient wrap artists of the epigenome: Talbert, P.B. and Henikoff, S. Nat. Rev.
Mol. Cell Biol., 2010doi:10.1038/nrm2861
2. Divide and (epigenetic) rule: Chromatin domains as functional and structural units of genomes.
Mishra, R.K. and Galande, S. Journal ofIndian Academy of Sciences, Platinum Jubilee issue, 2009,
pp211-224
3. Berstein et al. (2007). The mammalian epigenome. Cell, 128:669-681
4. Fuks, F. (2005). DNA methylation and histone modifications: teaming up to silence genes. Curr
Opin Genet Dev.,15(5):490-495
5. Lunyak, V.V. (2008). Boundaries. Boundaries...Boundaries???. CurrOpin Cell Biol., 20(3):281-
287
Page 74
Recommended Readings:
1. Developmental Biology: S.F. Gilbert (2006) 8th edition, SinauerAssociates
2. Principles of Development: L. Wolpert, R. Beddington, T. Jessell, P. Lawrence, E. Meyerowitz
and J. Smith (2008) Oxford UniversityPress
3. Plant Physiology: L. Taiz and E. Zeiger (2006) 4th edition, SinauerAssociates
Recommended Readings:
1. Quantum Chemistry: D.A. McQuarrie (2007) 2nd edition, University ScienceBooks
2. Modern Quantum Chemistry: Introduction to Advanced Electronic Structure Theory: A. Szabo
and N. Ostlund (1996) New edition, DoverPublications
3. Quantum Chemistry: I.N. Levine (2008) 6th edition, Prentice Hall
Recommended Readings:
1. Physical Chemistry: P.W. Atkins and J.de Paula (2010) 8th edition, Oxford UniversityPress
2. Physical Chemistry: G.M. Barrow (2007) 5th edition, Tata McGraw HillsPublishing
Page 75
3. Physical Chemistry: I.N. Levine (2010) 5th edition, Tata McGraw Hills Publishing Modern
Electrochemistry: Bockris and Reddy (1998) 2nd edition,Springer
Recommended Readings:
1. Introduction to Molecular Spectroscopy: G.M. Barrow (1988)McGraw-Hill
2. Fundamentals of Molecular Spectroscopy: C.N. Banwell and E.M. McCash (1994) 4thedition,
Tata McGrawHill
3. Modern Spectroscopy: J.M. Hollas (2004) 4th edition, Wiley, NewYork
4. Spectra of Atoms and Molecules: P.F. Bernath (2005) 2nd edition, Oxford University Press, New
York
5. Physical Chemistry - A Molecular Approach: D.A. Mc Quarrie and J.D. Simon (1997) 1st edition,
Viva Books PrivateLimited
6. Physical Chemistry: P.W. Atkins (2010) 9th edition, W.H.Freeman
Recommended Readings:
1. Inorganic Chemistry: D. Shriver and P. Atkins (2006) 4th edition, Oxford University Press,
International StudentEdition
2. Inorganic Chemistry: J.E. Huheey, E.A. Keiter and R.L. Keiter (2007) 4th edition, Pearson
Education
3. Reaction Mechanisms of Inorganic & Organometallic Systems: R.B. Jordan (2007) 3rd edition,
Oxford UniversityPress
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systems, The chemistry of carbon-carbon sigma and pi bonds and related reactions: Reactions of
Carbon-Carbon Double and triple bonds, formation of carbon-carbon single, double and triple bonds
and rings, chemistry of enolates, Organometallic Reagents in organic syntheses.
Recommended Readings:
1. Advanced Organic Chemistry: Part B: F.A. Carey and R.J. Sundberg (2007) 5th edition,Springer
2. March's Advanced Organic Chemistry: M. Smith and J. March (2001) 5thedition, Wiley-
Interscience
3. Organic Chemistry: J. Clayden, N. Greeves, S. Warren and P. Wothers (2000) 1stedition, Oxford
UniversityPress
4. ModernOrganicSynthesisAnIntroduction:G.S.ZweifelandM.H.Nantz(2006)1stedition,
W.H. Freeman
Contents: The student has to identify, talk to and mutually agree on a research project with the faculty
member before registering for this course. The scope, duration, structure, expectations, and evaluation
criteria (also see below) for the course are decided by the project supervisor.
Recommended Readings:
1. University Algebra: N.S. Gopalkrishnan (1986) New AgeInternational
2. Abstract Algebra: D.S. Dummit and R.M. Foote (2003) WileyIndia
3. Algebra: M. Artin (1991) PHI Learning PrivateLimited
4. Algebra: T.W. Hungerford (1974) GTMSpringer
5. Further Linear Algebra: T.S. Blyth and E.F. Robertson (2000) SUMSSpringer
6. Advanced Linear Algebra: S. Roman (2008) GTMSpringer
7. Finitely Generated Abelian Groups and Similarity of Matrices over a Field: C. Norman
(2012) SUMSSpringer
Page 77
functions of a real variable, existence of a non-measurable sets, nowhere dense sets with positive
measure, Cantor sets, Cantor ternary function, integrability, Littlewood's three principles, Lebesgue
convergence theorem; functions of bounded variations, change of variable, Jensen's inequality for
convex functions. General Measure & Integration Theory: Definition and examples of general
measure, integration of measurable functions, absolute continuity of measures, Radon-Nikodym
theorem, outer measure, the extension theorem, product measures and Fubini's theorem.
Recommended Readings:
1. Real Analysis: H.L. Royden (1997)Prentice-Hall
2. Measure Theory: V.I. Bogachev (2006)Springer
3. Measure Theory: K.B. Athreya and S.N. Lahiri (2006) TRIM Hindustan BookAgency
4. Real Analysis: Measure Theory, Integration and Hilbert Spaces: E.M. Stein and R. Shakarchi
(2005) Princeton UniversityPress
5. Measure Theory and Integration: G. Debarra (1981) New Age InternationalPublishers
Contents: The Basics: graphs, paths and cycles, connectivity, trees and forests,bipartite graphs,
contraction and minors, Euler tours, Hamilton Cycle. Matching and Covers: Maximum bipartite
matching algorithms, matching in general graphs, Tutte's 1-factor theorem. Cuts and Connectivity: 2-
connected Graphs, Menger's theorem. Network Flow: Max-flow Min-cut and the Ford-Fulkerson
algorithm. Planar Graphs: drawing, Euler's formula, Kuratowski's theorem, plane duality. Coloring:
coloring maps and planar graphs, coloring vertices, coloring edges.
Recommended Readings:
1. Introduction to Graph Theory: D.B. West (1996) PrenticeHall
2. Graph Theory: F. Harary (1969)Addison-Wesley
3. Modern Graph Theory: B. Bollobas (2008)Springer
4. Graph Theory: R. Diestel (2006)Springer
5. Graphs: C. Berge (1989)North-Holland
6. Graph Theory and its Applications: J.L. Gross and J. Yellen (2006) CRCPress
7. Introduction to Graph Theory: R.J. Wilson (1993) Addison WesleyLongman
Calculus of variations: Functionals and their extrema, Euler's equations, extrema with side conditions,
geodesics. Phase space analysis of higher-order systems: Autonomous systems, phase space,
equilibrium points, limit cycles, linearization, Lyapounov stability, asymptoticstability. Theory of
planar systems: Poincare-Bendixson theorem, Bendixson criterion. Existence and uniqueness:
Gronwall's Inequality, Contraction mappings, Picard approximations, Lipschitz condition, local
existence and uniqueness, Peano's Theorem, Maximum interval ofsolution
Recommended Readings:
1. Differential Equations, Dynamical Systems and an Introduction to Chaos: M.W. Hirsch, S. Smale
and R.L. Devaney (2012) AcademicPress
Page 78
2. Differential Equations and Dynamical Systems: L. Perko (2001)Springer
3. Theory of Ordinary Differential Equations: E.A. Coddington and N. Levinson (1955) McGraw
Hill
4. Ordinary Differential Equations: V.I. Arnold (2006)Springer
5. Elementary Differential Equations: W.E. Boyce & R.C. DiPrima (2008)Wiley
6. Differential Equations: P. Blanchard, R.L. Devaney and G.R. Hall (2008) CengageLearning
7. Ordinary Differential Equations: P. Hartman (1987) Cambridge UniversityPress
8. An Introduction to Dynamical Systems: D.K. Arrowsmith and C.M. Place (1990) Cambridge
UniversityPress
9. Dynamical Systems: G.D. Birkhoff (1999) Colloquium PublicationsAMS
10. Ordinary Differential Equations: G. Birkhoff and G. Rota (1989)Wiley
Products, quotient topology and spaces, identification topology and spaces, metric spaces, homeomorphisms.
Basic properties of vector bundles, the tangent and cotangent bundles. Vector fields and flows of
vectors fields, integral curves, singular points.
Recommended Readings:
1. J.R. Munkres,Topology
2. T.W. Gamelin and R.E. Greene, Introduction toTopology
3. M.A. Armstrong, BasicTopology
4. J.M. Lee, Introduction to TopologicalManifolds
5. Th. Br¨ocker and K. J¨anich, Introduction to DifferentialTopology
Contents: Vector spaces, linear operators, eigenvalue problems; postulates ofquantum mechanics,
Heisenberg uncertainty relations; time evolution; Schroedinger equation; harmonic oscillator; creation
and annihilation operators; orbital angular momentum; ladder operators; Hydrogen atom; spin angular
momentum; identical particles.
Recommended Readings:
1. Modern Quantum Mechanics: J.J. Sakurai (1999) Revised Edition,Addison-Wesley
2. Quantum Mechanics: C. Cohen-Tannoudji, B. Diu and F. Laloe (1977) Vol 1 and 2, Wiley-
Interscience
3. Principles of Quantum Mechanics: R. Shankar (2010) 2nd edition,Springer
4. Introduction to Quantum Mechanics: D.J. Griffiths (2004) 2nd edition,Addison-Wesley
Page 79
Bose and Fermi statistics, quantum ideal gas, Bose-Einstein condensation, black body radiation
spectrum, Einstein and Debye model of specific heat, interacting gases, van der Waals equation for
non-ideal gas, first-order and second-order phase transitions, Boltzmann equation.
Recommended Readings:
1. Statistical Mechanics: K. Huang (1987) 2nd edition,Wiley
2. Fundamental of Statistical and Thermal Physics: F. Reif (2008) Waveland PrInc
3. Statistical Physics of Particles: Mehran Kardar (2007) Cambridge UniversityPress
4. Statistical Mechanics: R.K. Pathria (1996) 2nd edition,Butterworth-Heinemann
Discrete dynamical systems, 1-d systems: logistic map, bifurcations, period doubling, chaos, Lyapunov
exponent, circle map; 2-d systems: Henon map, quasiperiodicity, Arnold tongue; measures of chaos,
Poincare map, basin boundary, FFT, Lyapunov exponents; Fractals: dimensions, multi- fractals, f-
alpha spectrum.
Special topics: control of chaos, stochastic resonance, synchronization, spatio-temporal chaos, time
series analysis, complex networks.
Recommended Readings:
1. Nonlinear Dynamics and Chaos: Steven Strogatz (2001) WestviewPress
2. Chaos and Nonlinear Dynamics: Hilborn (2009) Oxford UniversityPress
3. Chaos: An Introduction to Dynamical Systems: K.T. Alligood, T.D. Sauer and J.A. Yorke
(1996) Springer Chaos in Dynamical Systems: E. Ott (2003) Cambridge UniversityPress
4. Nonlinear Dynamics: M. Lakshmanan and S. Rajasekar (2003)Springer
Contents: Advanced electronic devices: photo diodes, light emitting diodes, solarcells, Schottky
diodes, tunnel diodes, Gunn diodes, IMPATT diodes; Electronic switches: BJT, FET and MOSfet
switches, high power switching; Circuit design: voltage and power regulation, BJT and FET amplifier
circuits, audio and high-frequency amplifier circuits, modulators and demodulators; Filters and
oscillators: low pass, high pass and notch filters, active filters, oscillators; Signal measurement and
signal processing: noise in electronic circuits, noise sources, interference and shielding, phase sensitive
detection and phase-locked loops, Fourier transform and fast Fourier transform, noise- reduction
techniques; Communications systems: modulation techniques, heterodyne and super heterodyne
receivers, fundamentals of audio and video transmission, fiber optic and satellite base
telecommunications,globalpositioningsystems;Digitalelectronics:introductiontovariousdigital
Page 80
signal standards, interfacing of signals between various logic level signals, analog to digital
conversion, digital to analog conversion, microcontrollers and microprocessor, fundamentals of digital
signal processing, introduction to field programmable gate arrays and their applications.
Recommended Readings:
1. The Art of Electronics: Paul Horowitz & Winfield Hill (2011) Cambridge UniversityPress
2. Digital Principles and Their Applications: Donal P. Leach, Albert Paul Malvino and Gautam
Saha (2006) Tata McGrawHill
3. Solid State Electronic Devices: B.G. Streetman & S.K. Banerjee(2005) 6th edition,Prentice
4. Electronic Devices and Circuits: Robert L. Boylestad & Louis Nashelsky (2009)Pearson
Contents: Introduction to discrete groups, Lie groups and Lie algebras, Liealgebras in particle physics,
discrete and continuous symmetries in nature, symmetries and conserved quantities, gauge symmetries
and fundamentalforces.
Recommended Reading:
1. Group Theory: A Physicist's Survey: P. Ramond (2010) 1st edition, Cambridge UniversityPress
2. Lie Algebras in Particle Physics: H. Georgi (1999) Westview Press, 2ndedition
Contents: The student has to identify, talk to and mutually agree on a researchproject before
registering for this course. The scope, duration, structure, expectations, and evaluation criteria for the
course are decided by the project supervisor.
SEMESTER VII
Content: What is Cancer and profile of a cancer cell; causes of cancer and how itspreads; molecular
biology of cancer; What is neurodegeneration and biology of the disease; molecular basis of
neurodegenerative disorders; Major types of heart diseases and their causes; review some of the
methods for detecting and investigating heart disease; How genetic traits are inherited; effects of single
gene mutations; types of chromosomal mutations; ways in which single gene mutations are treated;
Types and symptoms of some common infectious diseases; outline preventive measures; general
effects of antibiotics on infectious organisms, discuss some general aspects of the management and
treatment of specific infectious diseases.
Recommended Readings:
Page 81
1. Biology of Disease: N. Ahmed, M. Dawson, C. Smith and E. Wood (2006) 1st edition, Taylor
&Francis
2. One Renegade Cell: The Quest For The Origin Of Cancer (Science Masters): R.A. Weinberg
(1999) 1st edition, Basic Books
3. The Biology of Cancer: R. Weinberg (2006) 1st edition, GarlandScience
4. The Biology Of Disease: Murray, Jonathan and Kirk (2001) 2nd edition,Wiley-Blackwell
Recommended Readings:
1. Introduction to Plant Tissue Culture: M.K. Rajdan (2003) 2nd edition, SciencePublishers
2. Plant Biotechnology-the genetic manipulation of plants: A. Slater (2008) 2nd edition, Oxford
UniversityPress
3. Genetically Modified Crops (2011) 2nd edition, Imperial College Press, Worlds Scientific
Publishers
Recommended Readings:
1. Introduction to Protein Structure: C. Branden and J. Tooze (1999) 2nd edition, Garland Science
2. Biomolecular Crystallography: Principles, Practice, and Application to Structural Biology: B.
Rupp (2009) 1st edition, Garland Science Understanding DNA: C. Calladine, H. Drew, B. Luisi
and A. Travers (2004) Elsevier AcademicPress
3. Textbook of Structural Biology: A. Liljas, L. Liljas, J. Piskur, G. Lindblom, P. Nissen and M.
Kjeldgaard (2009) 1st edition, World ScientificPublishing
Page 82
vertebrates, physiology of reproduction, thermoregulation in ectothermic and endothermic animals.
Nervous and sensory systems across various invertebrate groups. Circulation, ionic balance and
excretion, respiration, digestion, moulting, sensory, nervous and neuroendocrine systems and
reproduction in insects.
Recommended Readings:
1. Eckert Animal Physiology: D.J. Randall et al. (2002) W.H.Freeman
2. Comparative Animal Physiology: P.C. Withers et al. (2001) BrooksCole
3. Animal Physiology: R.W. Hill, G.A. Wyse and M. Anderson (2008) SinauerAssociates
IBS-705: Immunology II
Recommended Readings:
1. Kuby Immunology: T.J. Kindt, B.A. Osborne and R.A. Goldsby (2006) 6th edition W.H.Freeman
2. In addition, reading assignments for this course will be from recently published papers from the
primaryliterature
Contents: The student has to identify, talk to and mutually agree on a researchproject with the faculty
member before registering for this course. The scope, duration, structure, expectations, and evaluation
criteria (also see below) for the course are decided by the projectsupervisor.
Contents: Introduction to interaction of radiation with matter, Fundamentals oflasers and laser
systems, Advanced spectroscopic techniques and applications, e.g., Raman spectroscopy, Electronic
spectroscopy, Fluorescence techniques, Cavity ringdown absorption spectroscopy, Supersonic jet
spectroscopy, Laser induced fluorescence, Stimulated emission pumping, Multiphoton ionization
spectroscopy, Photoelectron spectroscopy, Ultrafast spectroscopy.
Recommended Readings:
1. Modern Spectroscopy: J.M. Hollas (2004) 4th edition, Wiley, NewYork
2. High Resolution Spectroscopy: J.M. Hollas (1998) 2nd edition,Wiley
3. Laser Fundamentals: W.T. Silfvast (2008) 2nd edition, Cambridge University Press,Cambridge
4. Laser Chemistry: Spectroscopy, Dynamics and Applications: H.H. Telle, A.G. Urena, R.J.
Donovan, (2007) 1st edition, Wiley
5. PhysicalChemistry-AMolecularApproach:D.A.McQuarrieandJ.D.Simon(1998)1stSouth
Page 83
Asian edition, Viva Books Private Limited
6. Spectra of Atoms and Molecules: P.F. Bernath (2005) 2nd edition, Oxford University Press, New
York
Recommended Readings:
1. Organic Chemistry: J. Clayden, N. Greeves, S. Warren and P. Wothers (2000) 1st edition, Oxford
UniversityPress
2. Organic Synthesis: The Disconnection Approach: S.G. Warren (2008) 2nd edition,Wiley
3. The Logic of Chemical Synthesis: E.J. Corey and Xue-Min Cheng (1995) 1st edition, Wiley, New
York
4. Classics in Total Synthesis: K.C. Nicolaou and E.J. Sorensen (1996) 1st edition,Wiley-VCH
5. AdvancedOrganicChemistry,PartsAandB:F.A.CareyandR.J.Sundberg,Springer(2007)5th
edition, Springer
6. Other course material given time to time fromliterature
Contents: General aspects of chemistry of dioxygen, Fe, Cu and Co. Nature of M-O2 linkage, heme
proteins, molecular mechanism of oxygenases, catalase and peroxidase, Cu-Znsuperoxide dismutase.
Electron transferases, Respiration, Photosynthesis, Nitrogen fixation and Vitamin B12. Fe-S proteins,
redox behaviour. Metals for diagnosis and chemotherapy, Pt anti-cancer drugs as a case study. ESR
and Mossbauerspectroscopy.
Recommended Readings:
1. Bioinorganic Chemistry: I. Bertini, H.B. Gray, J.S. Valentine and J. Lippard (2007) South
Asian Edition, Viva Books PrivateLtd
2. Biological Inorganic Chemistry: Eds: H.B. Gray, E.I. Stiefel, J.S. Valentine and I. Bertini
(2006) University ScienceBooks
3. The Biological Chemistry of the Elements: J.J.R.F. da Silva and R.J.P. Williams (2001) 2nd
edition, Oxford UniversityPress
Contents: Introduction to Molecular Dynamics: Atomic potentials and force-fields, periodic boundary
conditions, equation of motion integrators, treatment of statistical mechanical ensembles,
Page 84
time correlation functions, radial distribution functions, mean square displacement, diffusion
coefficient. Perform simulation experiments using GROMACS Molecular Dynamics software.
Learning Molecular Builder and Visualization Tools (Gaussview, MOLDEN and Visual Molecular
Dynamics). Quantum Mechanics: Born Oppenheimer Approximation, Self Consistent Field
Theory/Density Functional Theory Equations, Basis Sets, Electron Correlation, Use of Quantum
Chemistry software (GAUSSIAN).
Recommended Readings:
1. Computer Simulations of Liquids: M.P. Allen and D.J. Tildesley (1987) Oxford Science
Publications
2. Molecular Modelling: Principles and Applications: A.R. Leach (1997) Addison Wesley
PublishingCompany
3. Introduction to Computational Chemistry: F. Jensen (2006) 2nd edition, John Wiley &Sons
4. Density Functional Theory of Atoms and Molecules: R.G. Parr and W. Yang, (1994) Oxford
UniversityPress.
Recommended Readings:
1. Experimental Physical Chemistry: V.D. Athawale and P. Mathur (2007) New Age International
Publisher
2. Relevant research paper in J. Chem.Educ.
3. Gaussian 03/09 Usermanual
Contents: The student has to identify, talk to and mutually agree on a researchproject with the faculty
member before registering for this course. The scope, duration, structure, expectations, and evaluation
criteria (also see below) for the course are decided by the projectsupervisor.
IBS-713:Galois Theory
Contents: Polynomial Rings: basic properties, division algorithm, roots ofpolynomials, Gauss's
Theorem (R UFD implies R[X] UFD), irreducibility criteria, symmetric polynomials, Newton's
Page 85
theorem. Field Extensions: Finite, algebraic and transcendental extensions, adjunction of roots, degree
of a finite extension, algebraically closed fields, existence and uniqueness of algebraic closure, splitting
fields, normal extensions, separable extensions, Galois extensions, automorphism groups and fixed
fields, fundamental theorem of Galois theory, examples: finite fields, cyclic extensions, cyclotomic
extensions, solvability by radicals, ruler and compass constructions, constructibility of regularn-gon.
Recommended Readings:
1. Abstract Algebra: D.S. Dummit and R.M. Foote (2003) WileyIndia
2. Galois Theory: I. Stewart (2003) Chapman Hall/CRC Math.Series
3. Algebra: S. Lang (2002)Springer
4. Field and Galois Theory: P. Morandi (1996) GTMSpringer
5. Galois Theory (lectures delivered at the University of Notre Dame): E. Artin (1997) Dover
Publications
6. Galois Theory: H.M. Edwards (1984)Springer
7. Field Theory: S. Roman (2006) Springer
8. Galois' Theory of Algebraic Equations: J.-P. Tignol (2001) WorldScientific
9. Lectures on the Algebraic Theory of Fields: K.G. Ramanathan, TIFR Lecture notes (available
online)
10. Galois Theory: M.P. Murthy, K.G. Ramanathan, C.S. Seshadri, U. Shukla and R. Sridharan,
TIFR Pamphlets (availableonline)
Contents: Normed linear spaces: Definition and examples, bounded linearoperators, Hahn-Banach
theorem. Banach spaces: Definition and examples, uniform boundedness principle, open mapping
theorem, closed graph theorem, quotient spaces, projections, dual spaces, weak and weak*
convergence, reflexivity, compact operators, spectrum of compact operators. Hilbert spaces: Definition
and examples, geometry of Hilbert spaces, orthonormal sets, orthogonal projections, Riesz
representation theorem. Spectral theory: Adjoint of an operator, unitary operators, normal operators,
self-adjoint operators on Hilbert spaces, spectral theorem for compact self-adjoint operators.
Recommended Readings:
1. Functional Analysis: B.V. Limaye (1996) New Age InternationalPublishers
2. Notes on Functional Analysis: R. Bhatia (2009) Hindustan BookAgency
3. Introduction to Topology and Modern Analysis: G.F. Simmons (2003) Krieger PublishingHouse
4. A Course in Functional Analysis: J. Conway (1990) Graduate Texts in Mathematics,Springer
5. Introductory Functional Analysis with Applications: E. Kreyszig (1989)Wiley
6. Essential results of Functional Analysis: R. Zimmer (1990) Chicago UniversityPress
Page 86
Definition, differentiable functions between manifolds, immersions, submanifolds, groups acting on
manifolds, covering manifolds. Lie groups: Definition, action of a lie group on a manifold and
transformation groups. Vector fields and Lie algebras: Definition, integral curves, flows, Lie algebra
of vector fields, Frobenius' theorem. Forms: Tensors, bilinear forms, Riemannian manifolds, wedge
product. Integration on manifolds: Definition of Integration of forms, Stokes' theorem, applications.
Curvature: Curvature on curves and surfaces, Theorema Egregium of Gauss.
Recommended Readings:
1. An Introduction to Differentiable Manifolds and Riemannian Geometry: W.M. Boothby (1975)
AcademicPress
2. Introduction to Smooth Manifolds: J.M. Lee (2000) GTMSpringer
3. Notes of Differential Geometry: N.J. Hicks (1965) VonNostrand
4. Geometry from a Differentiable Viewpoint: J. McCleary (2012) Cambridge UniversityPress
5. Differential Geometry of Curves and Surfaces: M.P. Do Carmo (1976) PrenticeHall
6. Elementary Differential Geometry: B. O'Neill (2006) AcademicPress
7. A Course in Differential Geometry and Lie Groups: S. Kumaresan (2002) TRIM Hindustan Book
Agency
8. Elementary Differential Geometry: A.N. Pressley (2010)Springer
9. Analysis and Algebra on Differentiable Manifolds: A Workbook for Students and Teachers: P.M.
Gadea and J.M. Masque (2009)Springer
IBS-716: Algorithms
Contents: Asymptotic order of growth: big O notation and its relatives. Datastructures: Priority
queues, heaps, queues, stacks, Union-Find. Basic Graph Algorithms: breadth first search, depth first
search, DAGs (directed acyclic graphs) and topological ordering, strongly connected components.
Greedy Algorithms: interval scheduling, Dijkstra's algorithm for finding shortest paths in a graph,
minimum spanning trees, Huffman codes for data compression. Divide and Conquer and Recurrences:
The master theorem, application to the complexity of recursive algorithms, example of an algorithm
with running time O(n^{1.59}). Dynamic Programming: weighted interval scheduling, the notion of
memoization over sub problems, subset sums and knapsacks. Network Flow: Max- Flow Min-Cut and
the Ford-Fulkerson algorithm. NP and computational complexity: reducibility, definition of NP, sketch
proof that 3-SAT is NP-complete, selected examples of NP-complete problems.
Recommended Readings:
1. Algorithm Design: J. Kleinberg and E. Tardos (2006) PearsonEducation
2. Introduction to Algorithms: H. Cormen, C.E. Leiserson and R.L. Rivest (2009) MITPress
3. Design and Analysis of Algorithms: A.V. Aho, J.E. Hopcroft and J.D. Ullman (1975)
Addison-Wesley
4. Fundamentals of Computer Algorithms: E. Horowitz and S. Sahni (1999) GalgotiaPublishers
5. Algorithms and Data Structures: K. Mehlhorn and P. Sanders (2008)Springer
6. Combinatorial Optimization: Algorithms and Complexity: C.H. Papadimitriou and K.
Steiglitz (1982) Prentice Hall
Page 87
IBS-717:Topics in Algebra-II
Modules, submodules, quotient modules and module homomorphisms. Generation of modules, direct
sums and free modules. Tensor products of modules. Exact sequences, projective modules. Tensor
algebras, symmetric and exterior algebras. Finitely generated modules over principal ideal domains,
invariant factors, elementary divisors, rational canonical forms. Applications to finitely generated
abelian groups and linear trans-formations. Noetherian rings and modules, Hilbert basis theorem,
Primary decomposition of ideals in noetherian rings.
Recommended Readings:
2. D.S. Dummit and R. M. Foote, Abstract Algebra, 2nd Ed., John Wiley,2002.
3. N. Jacobson, Basic Algebra I and II, 2nd Ed., W. H. Freeman, 1985 and1989.
Recommended Readings:
1. J.R. Munkres,Topology
2. T.W. Gamelin and R.E. Greene, Introduction toTopology
3. M.A. Armstrong, BasicTopology
4. J.M. Lee, Introduction to TopologicalManifolds
5. Th. Br¨ocker and K. J¨anich, Introduction to DifferentialTopology
Recommended Readings:
1. Quantum Mechanics: Vol I and 2, C. Cohen-Tannoudji, B. Diu and R. Laloe (2005) John
Wiley andSons
2. Modern Quantum Mechanics: J.J. Sakurai (2009) Revised edition, AddisonWesley
Page 88
3. Principles of Quantum Mechanics: R. Shankar (2010) 2nd edition,Springer
4. Introduction to Quantum Mechanics: D.J. Griffiths (2004) 2nd edition,Addison-Wesley
Contents:
Section 1: Introduction to non-ideal classical gas: second virial coefficient and van der Waals equation,
introduction to modern theory of phase transitions and critical phenomena, concept of renormalization
group.
Section 2: Introduction to non-equilibrium processes, diffusion, transport, Brownian motion, review
of probability distributions, stochastic processes, Markov processes, master equation, Fokker-Planck
equation, Langevin equation, normal and anomalous diffusion, Levy flights and fractional Brownian
motion.
Recommended Readings:
1. Statistical Mechanics: K. Huang (2005) 2nd edition, John Wiley andSons
2. Statistical Mechanics of Phase Transitions: J. Yeomans (1992) Oxford UniversityPress
3. Introduction to Modern Statistical Mechanics: D. Chandler (1979) Oxford UniversityPress
4. Elements of Non-equilibrium Statistical Mechanics: V. Balakrishnan (2009) AneBooks
5. Stochastic processes in Physics and Chemistry: N.G. van Kampen (2007) 3rd edition, North
Holland
Contents: Solutions to ordinary and partial differential equations, solutions toeigenvalue problems,
Monte-Carlo techniques, numerical integration, interpolation, density functional theory, molecular
dynamics.
Recommended Readings:
1. Computational Physics: J. Thijssen (1997) Cambridge UniversityPress
2. An Introduction to Computational Physics: T. Pang (2006) Cambridge UniversityPress
3. Computational Physics: Problem Solving with Computers: R.H. Landu et al (2007) Wiley
VCH
4. Electronic Structure: Basic theory and Practical Methods: R.M. Martin(2008) Cambridge
UniversityPress
5. M.C. Payne et al. (1992). Iterative minimization techniques for ab-initio total energy
calculations: molecular dynamics and conjugate gradients. Rev. Mod. Phys. 64:1046.
Contents:
Section 1: Fundamental Concepts-Qubits and their measurements, superdense coding,ensembles,
Page 89
Schmidt decomposition, Bell inequality.
Section 2: Quantum Computation-Circuits, quantum Fourier transform, search and factorization,
physical implementations.
Section 3: Quantum Information-Noise, fidelity measures, error-correction, entropy and information.
Recommended Readings:
1. Quantum Computation and Quantum Information: M.A. Nielsen and I.L. Chuang(2011)
Cambridge UniversityPress
2. Preskill's lecture notes on Quantum Information and Quantum Computation,
http://www.theory.caltech.edu/people/preskill/ph229/
3. An Introduction to Quantum Computing: P. Kaye, R. Laflamme and M. Mosca (2007)
Oxford UniversityPress
Contents: Crystal structure, diffraction, reciprocal lattice, chemical bonding,Bloch theory and band-
structures, beyond band theory: Mott insulator, nearly free electron model, tight binding theory, Hall
effect and magneto-resistance, conduction in metals, Hartree-Fock approximation, dynamic lattice
model and harmonic approximations, phonon and specific heat, anharmonic effects, insulators and
semiconductors, superconductivity, optical properties, magnetic properties.
Recommended Readings:
1. Solid State Physics: N.W. Ashcroft and N.D. Mermin (1976) College edition, Harcourt College
Publishers
2. Introduction to Solid State Physics: C. Kittel (2004) 8th edition, John Wiley andSons
3. Advanced Solid State Physics: Philip Phillips (2012) Cambridge UniversityPress
Contents: The student has to identify, talk to and mutually agree on a researchproject before
registering for this course. The scope, duration, structure, expectations, and evaluation criteria for the
course are decided by the project supervisor.
SEMESTER VIII
IBS-801: Microbiology
Content: Microbial diversity: Cultural and culture independent methods, taxonomy, functional
Page 90
anatomy of prokaryotic and eukaryotic microbial cells. Microbial physiology: Unique pathways for
fermentation, biodegradation and biosynthesis. Microbial growth kinetics. Development and
differentiation in microorganisms: spores, cysts, biphasic growth, Dictyostelium development,
myxobacterial development, Biofilms and signaling among microbial cells. Microbial genetics.
Principles of disease and epidemiology: Mechanisms of pathogenicity, host parasite interactions,
Antimicrobial drugs, disease
transmission dynamics, public health and prophylaxis. Microbial biotechnology and bioengineering:
Types of bioreactors, design of bioreactor, operation, downstream processing, development of new
products, scale up.
Recommended Readings:
1. Microbiology: An Introduction: G.J. Tortora, B.R. Funke and C.L. Case (2004) 8th edition,
PearsonEducation
2. Bacterial and Bacteriophage Genetics: E.A. Birge (2006)Springer
3. Microbiology: J. Nicklin, N. Khan, and R. Killington (2006) 3rd edition, Taylor andFrancis
4. Fermentation Microbiology and Biotechnology: M.E. Mansi and C.F.A. Bryce (2007) 2ndedition,
Taylor andFrancis
Content: Membrane Biochemistry: Lipid structure and dynamics, membrane protein insertion and
folding, lipid and protein organization in membranes, Molecular recognition principles on membranes,
Lipid and protein sorting, membrane fusion and fission, homeoviscous adaption, Membrane-mimetic
systems, membrane protein purification and reconstitution, Metabolism: Amino acid, lipid,
carbohydrate, nucleotide and glycogen metabolism, metabolic pathways such as glycolysis, citric acid
cycle, electron transport and oxidative phosphorylation.
Recommended Readings:
1. Molecular Biology of the Cell: B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts and P.
Walter (2002) GarlandScience
2. Life - As a Matter of Fat: O. Mouritsen (2004)Springer
3. The Structure of Biological Membranes: P. Yeagle (2004) CRCPress
4. Biochemistry: The chemical reactions of living cells: D. Metzler (2001) AcademicPress
5. Primary research articles and reviews will be utilized to provide contemporary insights into the
field
IBS-803: Bioinformatics & Computational Biology
Content: Sequences analysis (pair wise alignment, multiple sequence alignment,motif discovery, gene
annotation), pattern recognition/discovery in large-scale expression data, hidden markov models for
sequence analysis, inferring phylogenetic trees (UPGMA, neighbor-joining, maximum parsimony,
maximum likelihood), analysis of next generation sequencing data (Alignment, ChIP- Seq, RNA-seq,
Assembly), Bayesian networks.
Recommended Readings:
1. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids: R. Durbin,
S. R. Eddy, A. Krogh, and G. Mitchison (1999) Cambridge University Press, ISBN
0521629713
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2. Algorithms on Strings, Trees, and Sequences: Computer Science and ComputationalBiology:
D. Gusfield (2007) Cambridge University Press, ISBN 0521585198
Content: Nucleic acid chemistry, DNA, RNA, proteins, DNA-hydrogen bonding,base pairing,
replication, sequencing, annealing, hybridization, RNA, transcription, Amino acids, proteins, protein
synthesis. Biology of Genomes; Synthetic genomes; Biology of the nucleus – nuclear architecture (cell
biology and cytogenetics meets genomics); Mechanobiology and the nucleus; Advanced Chromosome
biology – karyotyping & Spectral Karyotyping (SKY), FISH methods, chromosome painting studies
and molecular cytogenetics, Copy number variations (CNV), array-comparative genomic
hybridization (a-CGH), Chromosome conformation capture, 3C, 4C and Hi-C; microarrays, Next
generation DNA sequencing; RNA Sequencing; Chip-Seq, Functional Genomics, Bioinformatics &
computational biology; Transcriptomics; Cancer Genomics, Epigenomics, Chemical Genomics;
Metabolomics; Proteomics; Genomics & stem cells; Systems biology
Recommended Readings:
1. Molecular Biology of the Cell: B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts and P.
Walter (2007) 5th edition (Sections: 1-3, Chapters:1-8)
2. Gibson et al, Science, 2010:329,52–56
3. http://cshperspectives.cshlp.org/cgi/collection/the_nucleus
4. Shivashankar, G.V. (2010). Nuclear mechanics and genome regulation, Methods Cell Biol.,
98:xiii
5. Vorsanova, S.G. et al (2010). Human interphase chromosomes: a review of available molecular
cytogenetic technologies, Mol Cytogenet., Jan 11;3:1
6. Padilla-Nash, H.M. et al (2006). Spectral karyotyping analysis of human and mouse
chromosomes. Nat Protoc., 1(6):3129-3142 Metzker, M.L. (2010) Nature Reviews Genetics
11:31-46
Content: Classical examples will be drawn from the literature that best illustratethe seamless
integration of mathematics and biology, such as modeling in neuroscience (the classification of spiking
activity based on different bifurcation scenarios), enzyme kinetics (slow-fast analysis and the
MichaelisMenten equations), cell cycle modeling, and others.
Recommended Readings:
1. Dynamic Models in Biology: S.P. Ellener and J. Guckenheimer (2006) Princeton University
Press
2. Mathematical Physiology: J. Keener and J. Sneyd (2008) Springer
3. Theoretical Neuroscience: P. Dayan and L. Abbott (2005) MITPress
4. Mathematical Models in Biology: L. Edelstein-Keshet (2005) RandomHouse
The larger objective of this course is to encourage students to participate in ongoing research at
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BBAU. This may be in the form of a reading/literature review/theoretical and computational
project/lab based research project.
The student has to identify, talk to and mutually agree on a research project with a faculty member
before registering for this course. The scope, duration, structure, expectations, and evaluation criteria
for the course are decided by the project supervisor.
Recommended Readings:
1. Spectrometric Identification of Organic Compounds: R.M. Silverstein, F.X. Webster and D.J.
Kiemle (2005) 7th edition,Wiley
2. Organic Spectroscopy: W. Kemp (1991) 3rd edition, W.H.Freeman
3. Introduction to Organic Spectroscopy: L.M. Harwood and T.D.W. Claridge (2000) 1st
edition, Oxford UniversityPress
4. Principles of Fluorescence Spectroscopy: J.R. Lakowicz (2006) 3rd edition,Springer
5. Introduction to Mass Spectrometry: J.T. Watson and O.D. Sparkman (2007) 4th edition,
Wiley
6. Mass Spectrometry a Textbook: J.H. Gross and P. Roepstorff (2011) 2nd edition,Springer
Recommended Readings:
1. Thermodynamics and Introduction to Thermostatistics: H.B. Callen (1985) 2nd edition, Wiley,
[First sixchapters]
2. Statistical Mechanics: D.A. McQuarrie, University Science Books, California, USA, Viva
Books Private Limited, New Delhi (Indian Edn) [First 7 chapters and some otherchapters]
3. An Introduction to Statistical Thermodynamics: T.L. Hill (1987) Dover Publications, Inc,
NewYork
Contents: Enzyme structure and catalysis, types of inhibitors, inhibitors as thebasis for drug design,
receptors, drug-receptor interactions, ion channels, natural products with drug-like activity, DNA
damaging and intercalating agents, RNA-based methods, drug metabolism, biodistribution, drug
delivery methods, prodrugs.
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Recommended Readings:
1. An Introduction to Medicinal Chemistry: G. Patrick (2001) 2nd edition, Oxford University
Press,USA
2. The Organic Chemistry of Drug Design and Drug Action: R. Silverman (2004) 2nd edition,
AcademicPress
3. Lehninger Principles of Biochemistry: D.L. Nelson and M.M. Cox (2008) 4th edition W.H.
Freeman
Recommended Readings:
1. CharacterizationofPorousSolidsandPowders:Surfacearea,PoreSizeandDensity:S.Lowell,
J.E. Shields, M.A. Thomas and M. Thommes (2010) 4th Revised edition, Springer and Kluwer
Academic
2. Modern Batteries: C.A. Vincent and B. Scrosati (2003) 2ndedition,
3. Grob’s Basic Electronics: M.E. Schultz (2007) 10th edition, TataMcGraw-Hill
Contents: Concepts of structure and bonding: definition, 18 electron rule, classesof ligands, bonding
and structural considerations. Fundamental reaction process: oxidative addition and reductive
elimination; insertion and elimination; ligand substitution processes, transmetallation, nucleophilic and
electrophilic addition and abstraction. Preparative and characterization methods: general methods for
the preparation of organometallic compounds and spectroscopic and analytical techniques for the
elucidation of structure, properties and reactivates. Synthetic applications: coupling reactions,
cyclization reactions, addition reactions, carbonylation, Pauson-Khand reaction, olefin oxidation,
carbenes and activation reactions. Industrial applications: hydrogenation, hydroformylation,
isomerization, metathesis and polymerization reactions. Bio-organometallics: nitrogen fixation,
coenzyme B12, hydrogenase, CO dehydrogenase andmethanogenesis.
Recommended Readings:
1. Organometallics: C. Elschenbroich and A. Salzer (1992) 2nd edition,VCH
2. OrganometallicChemistryoftheTransitionMetals:R.H.Crabtree(2005)4thedition,Wiley-
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Interscience
3. Basic Organometallic Chemistry: B.D. Gupta and A.J. Elias (2013) 2nd edition, Universities
Press(India)
4. Transition Metals in the Synthesis of Complex Organic Molecules: L. Hegedus and B.
Soderberg (2009) 3rd edition, University ScienceBooks
Contents: The student has to identify, talk to and mutually agree on a researchproject with the faculty
member before registering for this course. The scope, duration, structure, expectations, and evaluation
criteria (also see below) for the course are decided by the projectsupervisor.
Recommended Reading: As per suggestions of the project supervisor.
Contents: Algebraic numbers and algebraic integers: definitions and basicproperties, Dedekind
domains, prime ideals, ideal factorization, ramification index and inertial degree, decomposition
groups and inertia groups, finiteness of class groups, Dirichlet's unit theorem, adeles and ideles, adelic
proof of finiteness of class number and the unit theorem, Riemann and Dedekind zeta functions, class
number formula, DirichletL-functions.
Recommended Readings:
1. Number Fields: D.A. Marcus (1977)Springer
2. Problems in Algebraic Number Theory: J. Esmonde and M. Ram Murthy (2005)Springer
3. Algebraic Number Theory: J.W.S. Cassels and A. Frohlich (1993) AcademicPress
4. Algebraic Number Theory: S. Lang (1984)Springer
5. Algebraic Number Theory: J. Neukirch (1999) Springer
6. Algebraic Number Fields: G.J. Janusz (1996)AMS
7. Algebraic Number Theory and Fermat's Last Theorem: I. Stewart and D. Tall (2001) AK
Peters
8. Algebraic Number Theory: R. Narasimhan, S. Raghavan, S.S. Rangachari and S. Lal, TIFR
Pamphlets (availableonline)
9. Algebraic Number Theory: J. Milne (availableonline)
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Integration: Cauchy's integral formula, singularities, calculus of residues. Other Topics: The Gamma
function, Riemann zeta function, Weierstrass products, Riemann mapping theorem, analytic
continuation, Fourier transforms, Mellin transforms.
Recommended Readings:
1. Function Theory of One Complex Cariable: R.E. Greene and S.G. Krantz (2006)AMS
2. Theory of Complex Functions: R. Remmert (1991)Springer
3. Problems and Solutions for Complex Analysis: R. Shakarchi (1999)Springer
4. Complex Analysis: J. Bak and D.J. Newman (1997) UTMSpringer
5. Complex Analysis: L. Alhfors (1979) 3rd edition, McGrawHill
6. Functions of One Complex Variable I: J.B. Conway (1978) GTMSpringer
7. Complex Variables and Applications: J. Brown and R. Churchill (2008) 8thedition, McGraw
Hill
8. Complex Analysis: S. Lang (1999) 3rd edition, Springer
Elementary homotopy theory, homotopy equivalence, fundamental group, covering spaces. Tensors and tensor
bundles, differential forms and Stokes theorem, elementary de Rham cohomology theory.
Recommended Readings:
1. J.R. Munkres,Topology
2. T.W. Gamelin and R.E. Greene, Introduction toTopology
3. M.A. Armstrong, BasicTopology
4. J.M. Lee, Introduction to TopologicalManifolds
5. Th. Br¨ocker and K. J¨anich, Introduction to DifferentialTopology
Integral extensions, Going-up and Going-down theorems, Extension and contraction of prime ideals,
Noether's Normalization Lemma, Hilbert's Nullstellensatz. Localization of rings and modules. Primary
decompositions of modules.
Recommended Readings:
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1. M.F. Atiyah and I. G. Macdonald, Introduction to Commutative Algebra, Addison Wesley,
1969.
2. D.S. Dummit and R. M. Foote, Abstract Algebra, 2nd Ed., John Wiley,2002.
3. N. Jacobson, Basic Algebra I and II, 2nd Ed., W. H. Freeman, 1985 and1989.
Linear and quadratic equations, systems of linear equations, Linear Programming, matrices, probability,
Data Description and Probability Distributions, statistics, exponential and logarithmic functions.
Contents: Review of electromagnetic plane waves in vacuum and in media. Polarisation – Stokes
parameters. Fresnel -Kirchoff diffraction theory with examples. Fresnel coefficients, optics of metals,
bulk and surface plasmons, Scattering of light, Optical imaging sytems. Fourier viewpoint in optics,
Telescopes, microscopes, gratings, holography. Longitudinal and transverse coherence - Wiener
Khinchin theorem and Zernike-van Cittert theorem Michelson, Fabry-Perot. Stellar interferometers.
Electromagnetic modes and quantization of the electromagnetic field. Photons. Coherent states
Interaction of light with matter – dipole approximation. Polarisability and elastic scattering.
Spontaneous emission, stimulated emission and absorption. Non linear processes.
Recommended Readings:
1. Optics: E. Hecht (2001) 4th edition,Addison-Wesley
2. Optical Physics: A. Lipson, S.G. Lipson, and H. Lipson (2010) 4th edition, Cambridge University
Press
3. Fourier Optics: J.W. Goodman (2004) 3rd edition, Roberts andCompany
4. Principles of Nano-optics: L. Novotny and B. Hecht (2012) 2nd edition, Cambridge University
Press
5. Quantum Theory of Light: R. Louden (2000) 3rd edition, Oxford UniversityPress
6. Principles of Optics: M. Born and E. Wolf (1999) 7th edition, Cambridge UniversityPress
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conservation laws, angular momentum and isospin-invariance, parity, conservation and breakdown of
parity, CPT and breakdown of CP invariance, quark models of mesons and baryons, nuclear models:
liquid drop, Fermi gas, shell and collectivemodels.
Recommended Readings:
1. Introduction to Elementary Particles: D. Griffiths(1987) 2nd edition,Wiley
2. Quantum Field Theory in a Nutshell: A. Zee (2010) 2nd edition, Princeton UniversityPress
3. Particle Physics: R.R. Martin and G. Shaw (2008) John Wiley &Sons
4. An Introduction to Nuclear Physics: W.M. Cottingham and D.A. Greenwood (2001) 2ndedition,
Canbridge UniversityPress
Recommended Readings:
1. Adsorption by Powders and Porous Solids: Principles, Methodology and Applications: J.
Rouquerol, F. Rouquerol and K.S.W. Sing (1998) AcademicPress
2. Modern Batteries: An Introduction to Electrochemical Power Sources: C. Vincent and B. Scrosati
(1997) 2nd edition, Butterworth-Heinemann
3. An Introduction to Physics of Solar Cells: From Basic Principles to Advanced Concepts: P.
Würfel (2009) John Wiley &Sons
4. Fuel Cell Fundamentals: R. O'Hayre, S.-W. Cha, W. Colella and F.B. Prinz (2009) 2nd edition,
Wiley
5. Electrochemical Methods: Fundamentals and Applications: A.J. Bard and L.R. Faulkner (2000)
2nd edition, Wiley
Recommended Readings:
1. Advanced Solid State Physics: P. Phillips (2012) Cambridge UniversityPress
2. Principles of Condensed Matter Physics: P.M. Chaikin and T.C. Lubensky (2010) Cambridge
University Press, Foundation Books, New Delhi (Indianedition)
3. Solid State Physics: N.W. Ashcroft and N.D. Mermin(1976) College edition, Harcourt
CollegePublishers
4. Introduction to Solid State Physics: C. Kittel (2012) 8th edition, John Wiley andSons
5. Superconductivity of Metals and Alloys: de Gennes (1999) WestviewPress
6. Theory of Superconductivity: J. R. Schrieffer (1999) PerseusBooks
7. Theory of Solids: J.M. Ziman (1979) Cambridge UniversityPress
8. Theory of Quantum Liquids: Pines and Nozieres (1999) WestviewPress
Recommended Readings:
1. Gravity: An Introduction to Einstein's General Relativity: J.B. Hartle (2003) Benjamin
Cummings
2. Spacetime and Geometry: An Introduction to General Relativity: S. Carroll (2003) Benjamin
Cummings
Contents: The student has to identify, talk to and mutually agree on a researchproject before
registering for this course. The scope, duration, structure, expectations, and evaluation criteria for the
course are decided by the project supervisor.
Content: The scientific literature – primary, secondary, and tertiary literature; Database searches –
tools and strategies; Reading and evaluating the scientific literature - Academic writing – plagiarism
and referencing, Format and Style; writing a literature review. Different members of the Biology
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faculty will contribute to this course. Faculty member will choose topics from their own area of
research expertise, and highlight through readings and discussions the nuances of reading and
evaluating the literature in diverse topics like biochemistry, neurobiology, theoretical biology, etc.
Recommended Reading:
Reading assignments for this course will be from a variety of scientific journals.
SEMESTER IX
Students are supposed to carryout field / laboratory training cum experimental works and prepare a
comprehensive report along with a research proposal for future career. The area should include from
basics to latest developments and discoveries, which will impart a broad training in various disciplines
of Life Sciences and Biotechnology, These students will be able to pursue careers in pharmaceutical
industries, research laboratories, clinical research organizations, school, colleges and Universities as
researcher or academician
Laboratory Course:
1. To prepare power point presentation of a givenstudy
2. To write a research proposal for any funding agency inIndia
3. Other experiments as designed during thecourse
4. To evaluate research proposal/ report/ paper usingchecklists.
Suggested Readings:
1. Dawson, Catherine, 2002, Practical Research Methods, New Delhi, UBS Publishers’
Distributors,
2. Kothari, C.R., 1985, Research Methodology-Methods and Techniques, New Delhi, Wiley
EasternLimited.
3. Kumar, Ranjit, 2005, Research Methodology-A Step-by-Step Guide for Beginners, (2nd.ed),
Singapore, PearsonEducation
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101
Unit III:Experimental design
• Testing of hypothesis: Hypothesis and its types, errors and its types, levels of significance, one‐
tailed, and two‐tailed tests, tests for single mean and single proportion, equality of the two
population means and two populationproportions.
• Chi‐square test, Student's test for significance, fishers Z test. Experimental designs‐ completely
randomised, randomised block and factorial experimental designs. Analysis of variance for
different experimental designs, F distribution. Correlation and regression, linear and non‐linear
regression, multiple regressions. Non‐parametrictests
Laboratory Course:
1. Data base search for sequences of givengene
2. Primer designing using different sequencelibrary
3. To find out statistical significance of given researchpaper
4. Other experiments as designed during thecourse
Suggested Readings:
1. Basic statistics for behavioral science research by Mary B.Harris
2. Biometry: the principles and practice of statistics in biological research by Robert R. Sokal
and F. JamesRohlf
3. Statistics in applied sciences by B. K.Bhattacharyya
4. Bioinformatics Higgins &Taylor
5. Bioinformatics – A Primer, P. Narayanan New Age Internat.Pub.
6. Bioinformatics. Methods and Protocols. Misner & Krawetz Humana Press,NJ
7. Biostatistics A.E. LewisLatest
8. Introduction to Biostatistics by Khan & Khanun, UkaazPublication
9. Fundamentals of Biostatics – Practical Approach Dutta Kanishka Publ., NDelhi
Contents: Variables, expressions and statements; Values and types; Variablenames and keywords;
Operators and operands; Expressions and statements; Order of operations; String operations;
Functions; Function calls; Type conversion functions; Math functions; Composition; Adding new
functions; Flow of execution; Parameters and arguments; Variables and parameters are local; Stack
diagrams; Fruitful functions and void functions; Encapsulation; Generalization; Conditionals and
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102
recursion; Modulus operator; Boolean expressions; Logical operators; Conditional execution;
Alternative execution; Chained conditionals; Nested conditionals; Recursion; Infinite recursion;
Composition; Iteration; Multiple assignment; Updating variables; The while statement; break; Square
roots; Algorithms; Strings; Lists; List operations; List slices; List methods; Map, filter and reduce;
Dictionaries; Dictionary as a set of counters; Looping and dictionaries; Reverse lookup; Memos;
Global variables; Long integers; Sequences of sequences; Random numbers; Files; Reading and
writing; Filenames and paths; Classes and methods; Object-oriented features; Operator overloading;
Polymorphism; Debugging; Inheritance; Card objects; Class attributes; Class diagrams; Analysis of
Algorithms; Order of growth; Analysis of basic Python operations; Analysis of search algorithms.
Recommended Reading:
SEMESTER X
Students are supposed to carry forward their field / laboratory training cum experimental works
which they have done in 9thsemester.
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103
IBS-1002: Study Tour
Students are required to visit nature for diversity, research institutes and industries for real exposure in
subject and qualitative interactions to understand applications of the subject. A study tour may be
organized pertaining to different Life Sciences/ Microbiological/ Environmental/ Biotechnological/
Pharmaceutical industries/ research institutes/ various ecosystems. The study tour is highly essential
for study various concepts, processes and technology pertaining to Basic Sciences.
IBS-1003:Viva voce
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