06 - Chapter 1 - 3
06 - Chapter 1 - 3
06 - Chapter 1 - 3
INTRODUCTION
1.1 Indole
1.2 Recent trends in the synthesis of indole
1.3 Biologically active indoles
1.4 Indole research in this laboratory
1.5 Within the frame of the thesis
1.6 References
Chapter - 1
1. INTRODUCTION
It is well known that the indole ring is a privileged structural scaffold, which
has been found in a fascinating array of numerous natural products, such as alkaloids,
peptides and various synthetic compounds1,2. Indole and its derivatives have occupied
varied biodynamic properties3. The derivatives of indole were known for their dyeing
properties. Many compounds having structural resemblance to the ancient dye indigo
are known. A large number of naturally occurring compounds, like alkaloids, were
found to possess indole nucleus. The recognition of the plant growth hormone,
heteroauxin4 and the essential amino acid tryptophan5 as derivatives of indole have
known for its vasoconstrictor principle6 plays a vital role as a neurotransmitter and
from various natural sources, have immensely helped in their structure elucidation.
Because of this, good number of minor alkaloids containing indole nucleus are
reported in the literature. Mukherjee et.al10., have isolated a new indole alkaloid,
trinervaine from the roots of S. trinervis. A great deal of chemistry of indole and its
derivatives have thus been accumulated and many monographs11-13 on indole have
1
Chapter - 1
already been published in the literature. Today the scope of indole research is
molecules.
benzene ring is fused to position -2 and -3 of the pyrrole ring. This nucleus has ten π-
electrons which are free to circulate throughout the molecule. Two of these electrons
originate from nitrogen atom and each of the eight carbon atoms contributes one
electron to π-cloud. Since these ten electrons are distributed over nine ring atoms,
indole is an electron rich or -excessive system. Since the ring nitrogen atom
(1)
The chemistry14-16 of indole (1) began in the mid of the 19th century with
extensive research on the natural dye indigo, a violet-blue dye, imported to Europe
mainly from India since the 16th century. This research resulted in the early
viable industrial process for indigo, as well as the first preparation of indole in 186617
Indigo
2
Chapter - 1
Structure and reactivity of indoles
face of the pyrrole. The numbering of indole starts at the nitrogen as shown in
structure (1). Due to the delocalization of nitrogen lone-pair into the π-system, indole
is a very weak base with a pKa value of -3.5. This means, that you need a strongly
acidic solution (12 M H2SO4) to completely protonate indole. Of the three possible
cations, the 3-protonated (1b) is the thermodynamically most stable, since it retains
full benzene aromaticity (in contrast to the 2-protonated cation (1c)) with
delocalization over the nitrogen and the 2-carbon (in contrast to the N-protonated
3 being the most preferred place for substitution. The high reactivity of position-3 is
the basis of ring current affect in PMR spectrum and its appreciable resonance energy
3
Chapter - 1
Scheme-1
indole (1b) is the mannich reagent, an immonium ion, which is fairly reactive
electrophile.
Indole is widely distributed in nature10 viz, in essential oils, coal tar, molassess
tar and also it is found along with the pus, in liver, pancreas, brain and bile. Human
and animal faeces are found to contain indole and skatole. This nucleus is present in a
gliotoxin.
Indole and its derivatives have been synthesized by various procedures, the
most prominent being Fischer indole synthesis. Two review articles have appeared on
4
Chapter - 1
Several metal catalysts have been used in the synthesis of indoles on a
catalyst used are CdCl224, CdSO425, CdS26-30, Cu-CuO431, CaSO432, Ag, metal oxides
TiCl3 has been used as a reductive cyclisation catalyst for the condensation of
KiKugawa36 has synthesized the substituted indoles (2) from indolines. High
catalyst37.
(2)
in the presence of tungsten oxide or manganese oxide affords indole in 93% yield38.
5
Chapter - 1
obtained by gas phase catalysis of aniline and carbonyl compounds over aluminium
orthophosphates43.
wagaw et.al44., (R=CH3, C6H5; R1=H, COOC2H5; R2=Cl, CH3, OCH3, CF3).
Cobalt assisted synthesis of indole as 1:1 adducts from alkynes and diaryl
the cyano group of the resulting indole46. Seniei et.al47., have developed a new
1.2.2 Hydroxyindoles
The supra-suprafacial Wittig rearrangement of 1,2-dihydro-4H-3,1-
benzoxazines [R=CH3, OCH3, F, CF3, R1=H, R=CH3, R1=Cl] results in the synthesis
of 3-hydroxyindoles (6, 7) (R and R1 are same) in the presence of strong base. The
6
Chapter - 1
25min gave 1-hydoxyindoles49. Nagao et.al50., synthesized 4-hydroxyindole by
metal catalysts.
(6) (7)
2-5 days or 1-4h under reflux yield the corresponding indole carboxylates.
(8)
A new route has been developed to prepare 4-, 5- and 6- indole carboxylic acids
by Kasahara et.al52.
with HC=CSi(CH3)3 and the aniline analogues so obtained is treated with conc. HCl
and EtOH55.
(9) (10)
(11)
(12)
8
Chapter - 1
(13)
(14) (15)
important derivatives of indole, which are known for their varied biodynamic
properties, are the main objects of research in this field. The research work centers
Serotonin or 5-hydroxytryptamine (16) was isolated for the first time from
blood serum by Rapport and coworkers63. Earlier, Erspamer64 had shown that there
9
Chapter - 1
was a substance responsible for characteristic staining reactions of organtaffin cells of
(16)
He also showed that an extract of cells containing the above substance was
responsible for contractions of smooth muscles. Later the active substance isolated by
diethylamide at low concentrations. Wooley and Shaw68,69 have reported that some
animals. Some naturally occurring alkaloids viz., ergot and harmala alkaloids,
activity, is due to the tryptamine moiety present in it. These discoveries have
prompted many research workers to isolate many more alkaloids of this type from the
concentration were found in the basal ganglia71,72 and pineal glands73. Basal ganglia
are thought to be the area of brain concerned with emotions. These observations
suggested that any change in concentration of serotonin in the brain either by drugs or
injected, a marked increase in the serotonin level was observed. Tryptophan upon
10
Chapter - 1
hydroxylation at position-5 in presence of the enzyme hydroxylase gives 5-
and monoamino-oxidase are not uniformly distributed throughout the brain, but are
prevalent78.
have been used as early as 1500 BC in Aztec and Mayan culture as hallucinogens80.
It has been suggested that affinity for 5-HTID receptors may be obtained by
combining the ethylamine and indole groups. Maintenance of the hydrogen bond
Melatonin (19) is the principal hormone of the vertebrate pineal gland83. Recent
studies on the pharmacology of (19) and on the distribution of its binding sites suggest
11
Chapter - 1
Gessner and page86 have shown that 5-methoxy-N,N-dimethyltryptamine is
(20)
There are several indole alkaloids known and many of these have important
(21)
possessing amino group at different positions for the evaluation of antiserotonin and
12
Chapter - 1
methylmedamine (23) (1,2-dimethyl-3-ethyl-5-dimethylaminoindole) have shown to
serotonin like activity, but less than that of (23), whereas N,N-dimethyl-5-
upon the concentrations used. Potency changes with change in the position of amino
group in the indole nucleus. It was found that 5-, 6-, 7-aminoindoles were more active
R R1 R2 R3
22 H CH3 C2H5 N(CH3)2
23 CH3 CH3 C2H5 N(CH3)2
Tryptophan (24) is one of the naturally occurring amino acids and is a protein
structural unit. It is not synthesized in the animal body and hence must be supplied
This amino acid plays a vital role in the biosynthesis of cellular proteins and
13
Chapter - 1
(24)
screened for their biological activity. Anderson93 has synthesized and demonstrated
that, 5-methyltryptophan inhibits the growth of E.coli. Fields and Rydon94 have
(25) (26)
indole-3-butyric acid and indole-3-pyruvic acid, have been synthesized and tested for
indole-3-acetic acid exhibited much lower phytohormonal activity than the 3-isomer.
3-acetic acid (indomethacin) (26), which is used in the treatment of rheumatoid and
14
Chapter - 1
related conditions97.
drugs (NSAIDs) and have been shown to exert anti-inflammatory effects98,99. Tenidap
the treatment of rheumatoid arthritis and osteoarthritis. It also inhibits both enzymes
indomethacine.
(27)
diethylamide (28) are specially quoted. The action of LSD is selective103. It prevents
the antidiuretic104 action of serotonin and is also a very potent hallucinogenic drug.
(28)
15
Chapter - 1
1.3.5 Indole Esters (29)
been found to inhibit a number of copper enzymes, which are important in the
biological
(29)
NMDA receptor107.
glycine on current elicited by NMDA. These studies have indicated that NMDA
processes. These antagonists may have therapeutic value for the treatment of stroke,
was found to be associated with antitumour109 activity. Gray et.al110., have reported
diseases, especially those disorders resulting from ischaemic events. Some of the 3-
16
Chapter - 1
Nenitzescu indole synthesis and this classic sequence were used to construct
a synthesis of the antitumor indolequinone EO9112. This reaction has also been used to
(30)
Several piperazinyl indole derivatives118 are used in the treatment of CNS disorders
indolyl pyrrolidines120 have been found to be novel 5-HT3 antagonists and 5-HT1
17
Chapter - 1
or leukotrienes in mammals and are useful for treating asthma and inflammatory
organic chemists and a number of methods have been developed for the preparation of
mixture of CTet and cyclic indole trimer CTr is formed which possess potential
anticancer agent.
In recent years there has been increasing interest for the synthesis of organic
compounds using green and rapid method which is used ‘Grindstone Chemistry’.
These reactions were usually carried out on a very small scale in an agate mortar and
18
Chapter - 1
(31)
The analogues of indole play an important role in the making of dyes 5, 7, 5',
7'-tetrabromo derivative (Vat Blue 4B) and the 5, 5'-bis-sulfonic acid analog (Blue
(32). Yingchun Gu et.al127., have synthesized trimethine indole quinoline dyes (33).
(32) (33)
19
Chapter - 1
Nortopsentins A-C which exhibit in vitro cytotoxicity against P388 cells and
inhibit the growth of cancer cell lines HOP-92 (lung), A498 (renal) and MDA-MB-
231/1TCC (breast)130.
20
Chapter - 1
(34)
(35)
such as 5-HT1 B/1D receptor agonist activities used in the treatment of migraine,
21
Chapter - 1
kinase activity.
(36)
murrayanine, which was isolated from Murraya koenigii134. These plants are used as
folk medicines in Southern Asia for the analgesia, local anaesthesia and the treatment
22
Chapter - 1
breast cancer cell lines. All the tested compounds showed potent cytotoxicity activity
methyl-1H-indol-3-yl)-6-(2-p-tolyl-1H-indol-3-yl)cyclohexa-2,5-diene-1,4-dione (38)
(37) (38)
23
Chapter - 1
(39)
(40)
antibacterial and antifungal agents. All the synthesized compounds have shown
24
Chapter - 1
(41)
antioxidant agent.
(42)
6-fluoro-1H-indole (43) have shown potent antioxidant activity in the DPPH and
mM).
(43)
25
Chapter - 1
evaluated for their radiosensitization activity against the HT-29 cell line, electron
(44) (45)
Indole has been the major field of research in this laboratory for several years,
efforts in our laboratory centers mainly around the following derivatives of indole,
1.4.1 Serotonin
ylethylamines) have been synthesized and shown to have greater antiserotonin activity
for the evaluation of biological activity. Hiremath and Kaddargi149 have reported the
26
Chapter - 1
1.4.2 Tryptophan
nitro, methoxy nitro tryptaphans. Ambekar and Siddappa152 have synthesised some
1.4.3 Heteroauxin
mutagenic and its activity154 was found to be more than heteroauxin itself.
1.4.4 Carbazole
et.al157.
1.4.5 Carboline
The synthesis of several γ-carboline derivatives have been reported from this
These workers have made use of polyphosphate ester158 for the first time in the
27
Chapter - 1
and benz(e) indole-2-(2'-ylethylamines). Same workers have reported the preparation
to alkaloids some antibiotics derived from microbial sources are also known to
possess indole nucleus. To isolate a compound, which can exhibit either like or
structural analogues have been synthesized and screened to know their biological
were screened for antiserotonin and antihistaminic activity. Siddappa et.al., have
indoles, which is novel and previously unknown heterocyclic system and isosteroic
with that present in the alkaloid Physostigmine. This work is extended to synthesize
A novel synthetic route has been developed by Biradar et.al163., for the
Hiremath et.al164., have developed another interesting method for the synthesis of
28
Chapter - 1
These diazepinoindoles were obtained by converting ethyl-2-methyl-5-hydroxyindole-
cyclodehydration produced the above heterocyclic system. In all these cases free
features of serotonin. Further, this work is extended by the above workers165 to obtain
imidazoles containing indole and evaluated for antimicrobial activity167 and also
through an amino bridge, have been reportd by Hiremath et.al171. These compounds
29
Chapter - 1
have exhibited appreciable antibacterial and fungicidal properties. The substituted 2-
and triazoles.
indolylthiazolidinones175.
evaluated them for antimicrobial activity are the recent developments. Biradar
et.al177., have synthesized some bisindolyl analogs for in vitro cytotoxic and DNA
cleavage studies.
Manjunath179 have done the synthesis of some triheterocyclic moieties, which are
30
Chapter - 1
linked with indoles. These compounds 2-(5'-chloro-2'-phenylindole-3-yl)-5-
for various biological activities. Biradar et.al180., have synthesized MK-10 clay
catalyzed, one pot, three component and efficient synthesis of novel 4-(2',5'-
disubstituted-1'H-indol-3'-yl)-2,6-bis(2',5''-disubstituted-1''H-indol-3''-yl)pyridine-3,5-
chemistry of indole and its derivatives. It is just impossible to cite the pharmacology
of indole derivatives in a few pages. Good numbers of indole derivatives have found
CHAPTER-1: INTRODUCTION
This chapter has the biological importance of indole and its number of
derivatives have been described. Synthesis of indole fused with other heterocycles
different groups and molecules which are also biologically active may results into a
more potent molecule. Hence synthesis of several indole substituted with other
heterocycles have been synthesized. In this chapter, the detailed discussion about the
research going on in indole field in this laboratory has also been presented.
31
Chapter - 1
CHAPTER-2: DESIGN AND SYNTHESIS OF
INDOLYLCARBOHYDRAZIDES AND THIOPHENO-4-
THIAZOLIDINYLINDOLES
a) 3,5-disubstituted-N'-(1-(2,5-dichlorothiophen-3-yl)ethylidene)-1H-indole-2
carbohydrazide.
b) 3,5-disubstituted-N-(2-(2,5-dichlorothiophen-3-yl)-2-methyl-4-oxothiazolidin-3-
yl)-1H-indole-2-carboxamide.
c) 5-substituted-N-(2-(2,5-dichlorothiophen-3-yl)-2,5-dimethyl-4-oxothiazolidin-3-
yl)-3-phenyl-1H-indole-2-carboxamide.
32
Chapter - 1
CHAPTER-3: MICROWAVE ASSISTED SYNTHESIS OF NOVEL INDOLE
ANALOGUES
R= Cl, Br & CH3; R'= Cl, CH3 & H; R''= Cl, H & CH3; R'''= Ph & H
33
Chapter - 1
CHAPTER-4: SYNTHESIS OF NOVEL BISINDOLYLOXADIAZOLE
ANALOGUES
R= Cl, Br & CH3; R'= Cl, Br, CH3 & H; R''= Ph & H
1) Antimicrobial Activity
Antibacterial Activity
Antifungal Activity
2) Antioxidant Activity
LIST OF PUBLICATIONS
LIST OF PRESENTATIONS
34
Chapter - 1
1.6 References
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Chapter - 1
19. J. M. Bruce, J. Chem. Soc., 15, 14 (1962).
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Chapter - 1
38. K. K. Showa Denko, Jap. Patent, JP57, 139, 064 (1982); Chem. Abstr, 98,
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99. P. F. Moore, D. L. Larson, I. G. Otterness, A. Weissman, S. B. Kadin, F. J.
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44