Mycobacteriumtuberculosis and Antibiotic Resistance
Mycobacteriumtuberculosis and Antibiotic Resistance
Mycobacteriumtuberculosis and Antibiotic Resistance
BY
FEBRUARY, 2024
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OUTLINE
Abstract
Introduction
Epidemiology of tuberculosis
Pathogenesis of tuberculosis
Implications of transmission and acquired cases
First-Line Anti-TB Drugs
Second-Line Anti-TB Drugs
New Anti-TB Drugs
Conclusion
References
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ABSTRACT
Tuberculosis (TB) is a serious public health problem worldwide. Its situation is worsened by the
presence of multidrug resistant (MDR) strains of Mycobacterium tuberculosis, the causative
agent of the disease. In recent years, even more serious forms of drug resistance have been
reported. A better knowledge of the mechanisms of drug resistance of M. tuberculosisand the
relevant molecular mechanisms involved will improve the available techniques for rapid drug
resistance detection and will help to explore new targets for drug activity and development. This
review article discusses the mechanisms of action of anti-tuberculosis drugs and the molecular
basis of drug resistance in M. tuberculosis.
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INTRODUCTION
Tuberculosis (TB) is an infectious disease caused by a group of closely related acid fast
aerobic, non-motile bacilli that belong to the Mycobacterium tuberculosis complex (M.TBC).
M.TBC bacteria are currently grouped into nine human-adapted phylogenetic lineages (L1–L9)
and four animal-associated lineages (Shuaib et al., 2022). Of these, the L2, L3, and L4 strains are
the most common worldwide. M.TBC is a group of genetically similar bacteria that cause
microti, Mycobacterium pinnipedii, and Mycobacterium caprae. This group also includes two
other species, Mycobacterium orygis and Mycobacterium mungi, that were previously designated
as separate species and have been identified as the causative pathogens for TB among banded
mongooses and East African oryx (CDC, 2016). Although all these microorganisms are
genetically similar, their phenotypes, host tropisms, and pathogenicity vary. M. tuberculosis is
responsible for more than 90% of human tuberculosis cases and it also is able to infect animals
that come into contact with infected people. Of the members of the M.TBC family, M. bovis has
the broadest spectrum of host infection, affecting humans as well as a wide range of domestic
Tuberculosis (TB) remains as an important infectious disease and public health concern
worldwide. According to the latest World Health Organization (WHO) report, there were an
estimated 8.6 million incident cases of TB in 2012 and 1.3 million deaths were attributed to the
disease. More than half a million cases occurred in children and 320,000 deaths were reported
among HIV-infected persons (Kwan and Ernst 2016). However, even more disturbing is the
emergence of drug resistance. In 2012, there were an estimated 450,000 cases of multidrug
resistant (MDR)-TB and 170,000 deaths were due to it. MDR-TB is caused by strains of
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Mycobacterium tuberculosis that are resistant to at least rifampicin and isoniazid, two key drugs
in the treatment of the disease. Since 2006, it has been recognized the presence of even more
strains in addition to being MDR are also resistant to any fluoroquinolone and to at least one of
the injectable second-line drugs: kanamycin, capreomycin or amikacin. More recently, a more
worrying situation has emerged with the description of M. tuberculosis strains that have been
found resistant to all antibiotics that were available for testing, a situation labelled as totally drug
resistant (TDR)-TB. Early detection of all forms of drug resistance in TB is a key factor to
reduce and contain the spread of these resistant strains. A better knowledge of the mechanisms of
action of anti-TB drugs and the development of drug resistance will allow identifying new drug
targets and better ways to detect drug resistance. The following sections will review the mode of
action and resistance mechanisms of the main anti-TB drugs as well as new drugs recently
Antibiotics have played a crucial role in the reduction in the incidence of TB globally as
evidenced by the fact that before the mid-20th century, the mortality rate within five years of the
onset of the disease was 50%. The use of antibiotics has eliminated TB as a devastating disease,
but the challenge of resistance to anti-TB drugs, which had already been described at the time of
the introduction of streptomycin, has become a major global issue in disease management.
drug use, prescription errors, and non-compliance of patients, has been identified as a critical risk
antibiotics, the gradual decline in antibiotic development, and different economic and social
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Epidemiology of Tuberculosis
It is estimated that more than 90% of new TB cases and death occur in the high TB
burden developing countries. Multidrug anti-tuberculous therapy had been found effective when
using the Directly Observed Therapy Short Course (DOTS) strategy to improve compliance to
treatment of TB. With the emergence of MDR TB, the DOTS strategy was expanded to
accommodate second-line drugs in the Directly Observed Therapy short course with MDR
diagnosis, management, and treatment (DOTS PLUS) strategy. Treatment failure, however, can
still occur leading to relapse and development of drug-resistant TB strains to second-line drugs
According to the WHO, Eastern Europe’s rates of MDR TB are the highest and MDR TB
makes up to 20% of all new TB cases, while in The Union State, it accounts for 28% of new TB
progressively increasing MDR rates despite overall decreasing numbers of TB cases. This is
Most of the hospital-based reports in Nigeria indicate that there is some level of MDR
TB, which though not documented on a regular basis show progressive increase over time. This
case scenario plays out in other developing countries where continuous surveillance or
such as South Africa and India, it has been noted that the increasing TB prevalence may be
driven by HIV coinfection. Most of these reports are, however, based on testing of adult
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Pathogenesis of Tuberculosis
(M.tb), which is airborne and most commonly affects the lungs (known as pulmonary TB), but
can also spread to other parts of the body (known as extrapulmonary TB). As M.tb is essentially
only found in humans (there is no animal reservoir for it), it has evolved to persist in humans for
long time and only a fraction of people infected will develop active tuberculosis (about one
quarter of the world’s population is latently infected with M.tb according to the WHO 2022
report). After initial infection, about 90% of infected people do not develop active disease, and
M.tb can persist in the body for years (even a lifetime) without causing disease. People with
latent TB infection have no symptoms, are not contagious, and cannot spread TB to others.
However, without treatment, the dormant mycobacteria can wake up and develop TB disease
(active TB) in about 5% to 10% of infected people at some point in their lives (Patterson and
infection, or active disease depends on the initial interaction between bacilli and AMs (Patterson
and Wood , 2019). Thus, not all people exposed to an infectious TB patient will become infected
with M. tuberculosis. The likelihood of TB transmission depends on several factors, the most
(1) the inhaled dose of infectious particles, which in turn depends on the bacillary load
(2) the environment in which the exposure occurred (e.g., unventilated rooms increase
(4) the duration of exposure (people in close contact with TB patients increase the risk of
droplet transmission).
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If the macrophages fail to kill the bacilli, infected AMs migrate from the alveolar space into the
lung interstitium, where the bacilli infect other cells such as DCs and different macrophage
populations. The spread of bacilli from the site of infection is based on their ability to convert
these antimicrobial cells into a permissive cellular niche. At this stage, the bacteria can spread to
any part of the body (e.g., lymph nodes, lungs, spine, bones, or kidneys) via the lymphatic and
In the high-burden countries, there are reportedly 20-35.2% of new cases and 54-62% of
relapse cases that develop MDR TB, accounting for 82% of all incidences of MDR TB. Thus,
high burdens of MDRTB and XDR TB are eventually perpetuated from direct transmission
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within communities. In cases where TB–HIV coinfections are also prevalent, this significantly
favors direct transmissibility. Direct transmission is therefore the most common way drug-
resistant TB is spread and this must be stemmed to arrest the imminent global health threat from
Rifampicin
one of the most effective anti-TB antibiotics and together with isoniazid constitutes the basis of
the multidrug treatment regimen for TB. Rifampicin is active against growing and non-growing
(slow metabolizing) bacilli (Alexander et al., 2012) The mode of action of rifampicin in M.
tuberculosis is by binding to the β-subunit of the RNA polymerase, inhibiting the elongation of
Isoniazid
Isoniazid was introduced in 1952 as an anti-TB agent and it remains, together with
rifampicin, as the basis for the treatment of the disease. Unlike rifampicin, isoniazid is only
active against metabolically-active replicating bacilli (Ndjeka 2014). Also known as isonicotinic
acid hydrazide, isoniazid is a pro-drug that requires activation by the catalase/peroxidase enzyme
KatG, encoded by the katG gene, to exert its effect. Isoniazid acts by inhibiting the synthesis of
Ethambutol
Ethambutol was first introduced in the treatment of TB in 1966 and is part of the current
first-line regimen to treat the disease. Ethambutol is bacteriostatic against multiplying bacilli
interfering with the biosynthesis of arabinogalactan in the cell wall. In M. tuberculosis, the
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genes embCAB, organized as an operon, code for arabinosyl transferase, which is involved in the
Streptomycin
Originally isolated from the soil microorganism Streptomyces griseus, streptomycin was
the first antibiotic to be successfully used against TB. Unfortunately, as soon as it was
is an aminocyclitol glycoside active against actively growing bacilli and its mode of action is by
inhibiting the initiation of the translation in the protein synthesis. More specifically, streptomycin
acts at the level of the 30S subunit of the ribosome at the ribosomal protein S12 and the 16S
rRNA coded by the genes rpsL and rrs, respectively (Alexander et al., 2012).
Fluoroquinolones
Both ciprofloxacin and ofloxacin are synthetic derivatives of the parent compound nalidixic acid,
moxifloxacin and gatifloxacin are being evaluated in clinical trials and proposed as first-line
antibiotics with the purpose of shortening the length of treatment in TB (Alexander et al., 2012).
The mode of action of fluoroquinolones is by inhibiting the topoisomerase II (DNA gyrase) and
topoisomerase IV, two critical enzymes for bacterial viability. These proteins are encoded by the
genes gyrA, gyrB, parC and parE, respectively. In M. tuberculosis, only type II topoisomerase
(DNA gyrase) is present and, thus, is the only target of fluoroquinolone activity (Shuaib et al.,
2022).
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Kanamycin, Capreomycin, Amikacin, Viomycin
These four antibiotics have the same mechanism of action by inhibiting the protein
synthesis but, while kanamycin and amikacin are aminoglycosides, capreomycin and viomycin
are cyclic peptide antibiotics. All four are second-line drugs used in the management of MDR-
Ethionamide
a pro-drug requiring activation by a monooxygenase encoded by the ethA gene. It interferes with
the mycolic acid synthesis by forming an adduct with NAD that inhibits the enoyl-ACP
ethionamide occurs by mutations in etaA/ethA, ethR and also mutations in inhA, which cause
resistance to both isoniazid and ethionamide. Moreover, studies with spontaneous isoniazid- and
Although it was one of the first anti-tuberculosis drugs used in the treatment of the
disease, together with isoniazid and streptomycin, para-amino salicylic acid or PAS is now
considered as a second-line drug part of the treatment regimen for MDR-TB. Until recently, its
mechanism of action was not completely defined. It has been proposed that being an analog of
para-amino benzoic acid, it must compete with it for dihydropteroate synthase, interfering in the
process of folate synthesis. A study using transposon mutagenesis identified mutations in the
thyA gene associated with resistance to PAS that were also present in clinical isolates resistant to
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Cycloserine
alanine ligase inhibits the synthesis of peptidoglycan. It can also inhibit d-alanine racemase
(AlrA) needed for the conversion of l-alanine to d-alanine. Although the actual target of
it was shown that overexpression of alrA led to resistance to cylcoserine in recombinant mutants.
More recently, it has also been shown that a point mutation in cycA, which encodes a d-alanine
transporter, was partially responsible for resistance to cycloserine in M. bovis BCG (Anthony et
al., 2016).
Notwithstanding the alleged lack of interest of the pharmaceutical industry for the
development of new antibiotics, there are several anti-tuberculosis drugs in the pipeline and
some of them are already being evaluated in clinical trials and in new combinations with the
Bedaquiline
the class of diarylquinolines with specific activity against M. tuberculosis, which has also shown
in vitro activity against other non-tuberculous mycobacteria. Bedaquiline was discovered after a
whole-cell assay. The drug showed in vitro and in vivo activity against M. tuberculosis and then
entered into clinical evaluation for drug susceptible and MDR-TB (Reddy et al., 2010
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Delamanid
imidazooxazole with activity against M. tuberculosis that acts by inhibiting the synthesis of
mycolic acid and is undergoing clinical evaluation in a phase III trial (Reddy et al.,
2010).Delamanid was previously shown to have a very good in vitro and in vivo activity against
comparable to that of rifampicin, Delamanid has more recently shown its safety and efficacy in a
PA-824
tuberculosis. This small-molecule compound showed a very good in vitro and in vivo activity in
animal models and it also showed to be safe and well tolerated (Reddy et al., 2012).
SQ-109
Compound SQ-109 is a synthetic analogue of ethambutol that has shown in vitro and in
vivo activity against drug-susceptible and drug-resistant M. tuberculosis. It has also been shown
to possess synergistic in vitro activity when combined with first-line drugs, and more
interestingly, when combined with bedaquiline and the oxazolidinone PNU-10048. SQ-109 is
The mode of action of SQ-109 is by interfering with the assembly of mycolic acids into
the bacterial cell wall core, resulting in accumulation of trehalose monomycolate, a precursor of
Benzothiazinones
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A new class of drug with antimycobacterial activity, 1,3-benzothiazin-4-one or
have in vitro, ex vivo and in vivo activity against M. tuberculosis. It was also found to be active
against drug-susceptible and MDR clinical isolates of M. Tuberculosis (Reddy et al., 2012).
Drugs used in the treatment of MDR TB are less effective, more toxic (90% experience
side effects), used for longer duration (usually more than 2 years’ duration), and are more costly
than drugs used in susceptible TB (10-100 times more costly). In the 27 high-burden countries,
the expenditure for MDR-TB treatment has increased cost of TB care from an estimated 1.3
billion USD in 2010 to 4.4 billion USD by 2015. Some of the common adverse effects might
also require monitoring such as ototoxicity and renal failure. There is also the need to document
monitored because some MDR TB cases are in advanced stages of disease with other end-stage
organ failures. MDR TB therapy is often characterized by low treatment completion rates due to
death (15%), default (14-23%), and treatment failure (8-9%) (Pasca et al., 2010). To achieve
increased access, compliance, effective therapy, and retention in care, there is a need for close
monitoring. This is traditionally done by hospital-based care at MDR TB referral centers for the
initial therapy through health care providers. The model of care involves an initial hospitalization
until sputum culture conversion followed by ambulatory phase of treatment in the nearest DOTS
facility. However, hospital-based care may serve as an obstacle to access. Ambulatory-based care
and community-based care have been proposed in management of MDR TB cases. There have
been some successful experiences in some countries using these methods. There would be need
for collaboration between these models of care especially when dealing with patients with
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advanced disease who may benefit for some periods from hospital-based care but would need
community- or home-based care for terminal stages. Community and Ambulatory care also serve
to ensure adequate contact tracing for cases of MDR and XDR TB, which is of great importance
given the role of transmission of disease in spreading the MDR TB epidemic (Pasca et al., 2010).
When contacts are traced, there is need for DST to identify appropriate second-line drugs.
Currently, the diagnostic tools recommended are molecular-based testings: Line probe Assays
and Xpert MTB/RIF. There is need, however, to establish quality control measures for these tests
to avoid false positives and false negatives. Such tools as would ensure international standards
for reference laboratories and other peripheral centers have been developed in some countries.
Laboratory monitoring also includes structured assessment tools for TB microscopy, which is
Prevention of MDR TB
To achieve success in the control of MDR TB, there would be a need to strengthen
existing TB DOTS programs. To achieve this, some areas that should be focused on are the
creation of infection control policies both within and outside institutions. Health education of
how transmission of disease occurs from cases to vulnerable groups should be emphasized in
communities. Community-based care should be strengthened with recruitment of staff for contact
tracing of MDR cases, screening of the contacts, treatment administration, and identification of
those who are defaulting on treatment or require institutionalized care. There should be
expansion in the teams with involvement of all relevant health care partners to strengthen
Public–Private Mix initiatives for TB care and control (Pasca et al., 2010).
Infection control
This aims to prevent transmission from cases to other patients or health care workers. The
following means could help to ensure the protection of health care staff: Use of mask by all staff
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on medical and TB isolation wards and in the HIV clinics. HIV testing of all staff with
reallocation of those testing positive to lower-risk positions; Annual Chest Xray screening for TB
for all staff. Within health care institutions, TB control officers should be hired as well as cough
officer in waiting areas who would identify those that are in hospital for other reasons but who
may require TB screening. The duration of hospital admission and stay should be reduced. There
ventilation within the ward and the use of outdoor waiting areas for outpatients). MDR TB
Infection control programs should be created with plans for intervention should transmission be
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CONCLUSION
spontaneous gene mutations in M. tuberculosis that render the bacteria resistant to the most
commonly used anti-TB drugs. Among the reasons for this, the non-compliance with the
treatment regimens is signalled as the first cause. The standard treatment of TB calls for a six-
month regimen of four drugs that in the case of MDR-TB is extended to 18–24 months involving
second-line drugs. This makes compliance with the treatment regimens very challenging and the
rates of non-adherence could be high, resulting in poor outcomes and further dissemination of
MDR strains.
Notwithstanding the fact that mutations in a number of genes are clearly associated with
drug resistance in M. tuberculosis, there are still many cases where resistant strains do not
harbour any known mutation. For example, a recent study using whole-genome sequencing
identified new genes and internecine regions that were associated with drug resistance and its
evolution, showing that TB drug resistance is a phenomenon more complex than previously
assumed. More clarification is needed on the role of specific gene mutations and the
development of MDR- or XDR-TB, or the relation between drug resistance and fitness of the
bacteria. A better knowledge is also required on the role of efflux pump mechanisms and the
development of clinical drug resistance, or the role of porins, if any, on the intrinsic resistance to
certain antibiotics. It is, thus, quite important to further our knowledge of additional mechanisms
of drug resistance to the available anti-TB drugs. This could have a major impact on the
dynamics of TB transmission and for the discovery and development of new anti-TB drugs.
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