Kagawa 1976
Kagawa 1976
Kagawa 1976
A K R I G G 3171
ions to provide reasonable coordination distances. In ESTRADA-O, S., GOMEZ-LOUERO, C. & MONTAL, M. (1972).
view of the close-packed nature of the observed struc- Bioenergetics, 3, 417-428.
ture this m a y not be an energetically favoured process, GERMAIN, G., MAIN, P. t~ WOOLFSON, M. M. (1971). Acta
in which case the ion would probably prefer to lie Cryst. A27, 368-376.
HAMILL, R. L., HIGGINS, C. E., BOAZ, H. E. & GORMAN, M.
closer to either the triad of MePh carbonyl O atoms or (1969). Tetrahedron Lett. pp. 4255-4258.
to the triad of H y l v carbonyl O atoms and there would HAMILTON, J. A., STEINRAUF, L. K. & BRADEN, B. (1975).
then be no good reason for choosing the inside rather Biochem. Biophys. Res. Commun. 64, 151-156.
than the outside of the cavity. At the m o m e n t there IUPAC-IUB COMMISSIONON BIOCHEMICALNOMENCLATURE
does not seem to be any experimental evidence for a (1970). J. Mol. Biol. 52, 1-17.
significant covalent contribution to the M + . . . O bond IVANOV, V. T., EVSTRATOV, A. V., SUMSKAYA,L. V., MEL-
which might cause the ion to prefer to be outside the NIK, E. I., CHUMBURIDZE,T. S., PORTNOVA, S. L., BALA-
cavity. SHOVA,T. A. & OVCHINNIKOV,YU. A. (1973). FEBS Lett.
36, 65-71.
Finally, we note that the crystal structure conforma-
KITAIGORODSKY, A. I. (1965). Acta Cryst. 18, 585-590.
tion of uncomplexed Bv crystallized from n-heptane MUELLER, P. & RUDIN, D. O. (1967). Biochem. Biophys.
is similar to that proposed by spectroscopic studies for Res. Commun. 26, 398-404.
Bv in polar solvents. The p r e d o m i n a n t environment of OVCHINNIKOV, Yu. A., IVANOV, V. T., EVSTRATOV, A. V.,
the molecule in the crystal is non-polar, with only 1 to MIKHALEVA, I. I., BYSTROV, V. F., PORTNOVA, S. L.,
2 molecules of water for each Bv molecule. The struc- BALASHOVA, T. A., MESHCHERYAKOVA, E. N. t~ TUL-
ture described would seem to be a likely candidate for the CHINSKY, V. M. (1974). Int. J. Peptide Protein Res. 6,
uncomplexed molecule within biological membranes. 465-498.
OVCHINNIKOV, Yu. A., IVANOV, V. T. & MIKHALEVA, I. I.
(1971). Tetrahedron Lett. 159-162.
I thank Dr Larry Steinrauf for suggesting the prob-
POPOV, E. M., PLETNEV, B. Z., EVSTRATOV,A. V., IVANOV,
lem and providing the material, the Indiana Univer- V. T. t~ OVCHINNIKOV,YU. A. (1970). Khim. Prir. Soedin.
sity Medical Centre for support over the period during 5, 616-622.
which the crystals were grown, the Leeds University PRINCE, R.. C., CROFTS, A. R. • STEINRAUF, L. K. (1974).
C o m p u t i n g Laboratory for facilities, Dr Bernard Shel- Biochem. Biophys. Res. Commun. 59, 697-703.
drick for help with data collection, and the M RC and ROESKE, R. W., ISAAC, S., KING, T. E. & STEINRAUF, L. K.
SRC for supporting the crystallographic studies. (1974). Biochem. Biophys. Res. Commun. 57, 554-
561.
STEWART, J. M., KRUGER, G. J., AMMON,H. L., DICKINSON,
References C. & HALL, S. R. (1972). The X-RAY system - version
DICKERSON, R. E. & GELS, I. (1969). In The Structure and of June 1972, Tech. Rep. TR-192. Computer Science
Action of Proteins. New York: Harper & Row. Center, Univ. of Maryland, College Park, Maryland.
DORSCHNER, E. & LARD',', H. (1968). Antimicrobial Agents YAFUSO, M., FREEMAN,A. R., STEINRAUF,L. K. & ROESKE,
Ann. pp. 11-19. R. W. (1974). Fed. Proc. Abstr. 33, 1258.
this w o r k is to study the g e o m e t r y o f i n t r a m o l e c u l a r and isotropic ones for the H atoms. The weighting
h y d r o g e n b o n d i n g in o-nitrophenols, especially those scheme a d o p t e d was w = 1.0 for 0 < IFol <- 5-0, and w =
having low acidity (pK,) values (Andersen & Andersen, (5.0/lFo[) 2 for IFol > 5.0. The final R value was 0.076 for
1975), a n d the molecular stacking a n d overlapping in 768 non-zero reflexions.*
the crystals. The a t o m i c scattering factors were t a k e n f r o m
International Tables .for X-ray Crystallography (1962).
Experimental
The c o m p u t a t i o n was carried out on an N E A C 2200-
2, 4-D in itr o p h en o l crystallizes f r o m an ethanol solution 500 c o m p u t e r at the O k a y a m a University C o m p u t e r
as yellow plates parallel to (010), elongated along [100] Center. The p r o g r a m s used were H B L S - 5 and D A P H
a n d b o u n d e d by {100} a n d {001}. (Ashida, 1973).
Crystal data
2,4-Dinitrophenol, C6HaNzOs, M . W . 184"1; m.p. * A list of structure factors has been deposited with the
1 1 2 - 1 1 3 ° C ; o r t h o r h o m b i c , a = 6 . 1 0 6 (6), b = 2 3 - 2 4 (2), British Library Lending Division as Supplementary Publica-
tion No. SUP 31888 (4 pp.). Copies may be obtained through
c = 5 . 1 6 8 (5).~,, V = 7 3 3 ( 1 ) A 3, D x = 1 " 6 6 7 for Z = 4 , The Executive Secretary, International Union of Crystallog-
D,, = 1.67 g c m - 3 (by flotation in a q u e o u s K I solution); raphy, 13 White Friars, Chester CH1 1NZ, England.
/~(Cu Ks) = 8.1 c m - 1, F(000) = 376; systematic absences
h00, h = o d d ; OkO, k = o d d ; 00/, l = o d d ; space g r o u p
P212t21.
Crystals with dimensions 0.6 × 0.2 z 0.5 and 0.3 ×
0.2 x 0.3 m m in glass capillaries were used to obtain
Weissenberg p h o t o g r a p h s for the layers Okl to 4kl and
hkO to hk4 respectively. Intensities were visually
estimated a n d corrected for Lorentz a n d polarization
factors a n d for spot shape. A total of 768 independent
reflexions ( 7 5 . 4 % of the total accessible in the Cu 2"926
sphere) were placed on an absolute scale by m e a n s of
a Wilson plot ( B = 5.1 A-').
...zL...~ ~~--z---or
S t r u c t u r e d e t e r m i n a t i o n and r e f i n e m e n t
Table 3. The 0 . . . 0 contact (/~,), torsion angles z (°) and bond angles (o)
characteristic of the intramolecular hydrogen bonding of o-nitrophenols
(a) (b) (c) (d) (e) (f)
O(1)... 0(2) 2.546 2.557 2-558 2.587 2-593 2.599
T[H(1)-O(1)-C(1)-C(2)] 1.9 -4-2 13.6 -5-3 -13.5 -5.7
r[O(I)-C(1)-C(2)-N(1)] -2-3 0.9 - 1-7 -0.1 -0.4 0.2
r[C(1)-C(2)-N(1)-O(2)] 3.6 - 0.8 - 4.6 - 0.2 3.2 - 8.6
C(2)-C(I)-O(1) 125.0 123.8 124.8 125-5 124.9 125.5
N(1)-C(2)-C(I) 119-7 120-9 120.1 120.6 121.8 120.7
References: (a) n-Molecular compound anthracene-picric acid (Herbstein & Kaftory, 1976). (b) 2,6-Dinitrophenol (Iwasaki,
Sato & Aihara, 1976). (c) 2-Chloro-4,6-dinitrophenol (Andersen & Andersen, 1975). (d) 2-Nitro-4-chlorophenol (Kawai,
Kashino & Haisa, 1976). (e) 2,4-Dinitrophenol (this work). (f) 2-Bromo-4,6-dinitrophenol (Neustadt & Cagle, 1975).
3174 THE CRYSTAL AND MOLECULAR STRUCTURE OF 2 , 4 - D I N I T R O P H E N O L
BROWN, M. G. (1959). Trans. Faraday Soc. 55, 694-701. KOLESNIK, M. I. (1974). Zh. Fiz. Khim. 48, 1114-1118.
DE RANGO, C., BRUNIE, S., TSOUCARIS,G., DECLERCQ,J. P. MAZE-BAUDET, M. (1973). Acta Cryst. B29, 602-614.
& GERMAIN,G. (1974). Cryst. Struct. Commun. 3, 485-487. NEUMAN, A. & GILLIER-PANDRAUD, H. (1973). Acta Cryst.
DOMENICANO, A., MAZZEO, P. & VACIAGO,A. (1975). Acta B29, 1017-1023.
Cryst. A31, S117. NEUSTADT, R. J. & CAGLE. F. W. JR (1975). Acta Cryst.
FUKUYAMA, K., KASrtINO, S. & HAISA, M. (1973). Acta B31, 2727-2729.
Cryst. B29, 2713-2717. PANDARESE, F., UNGARETTI,L. & CODA, A. (1975). Acta
FUKUYAMA, K., OHKURA, K., KASHINO, S. & HAISA, M. Cryst. B31, 2671-2675.
(1973). Bull. Chem. Soc. Japan, 46, 804-808. PERRIN, M. & MICHEL, P. (1973a). Acta Cryst. B29, 253-
HERBSTEIN, F. H. & KAFTORY,M. (1976). Acta Cryst. B32, 258.
387-396. PERRIN, M. & MICHEL, P. (1973b)..4cta Cryst. B29, 258-
International Tables for X-ray Crystallography (1962). Vol. 263.
IlI, pp. 202-203. Birmingham: Kynoch Press. PERRIN, M. & THOZET, A. (1974). Cryst. Struct. Commun.
IWASAKI, F. (1973). Chem. Lett. pp. 227-228. 3, 661-664.
IWASAKI, F., SATO, M. & AIHARA, A. (1973). Chem. Lett. SASADA,Y. TAKANO,T. & KAKUDO,M. (1964). Bull. Chem.
pp. 249-250. Soc. Japan, 37, 940-946.
IWASAKI, F., SATO, M. & AIHARA, A. (1976). Acta Cryst. SUNDARALINGAM, M. & JENSEN, L. H. (1965). Acta Cryst.
B32, 102-106. 18, 1053-1058.
JONSSON, P.-G. & KVICK,/~. (1972). Acta Cryst. B28, 1827- VANDENBORRE,M. T., GILLIER-PANDRAUD, H., ANTONA, D.
1833. & BECKER, P. (1973). Acta Cryst. B29, 2488-2492.
KAWAI, R., KASHINO, S. & HAISA, M. (1976). Acta Cryst. WHITE, A., HANDLER, P. & SMITH, E. L. (1973). Principles
B32, 1972-1975. of Biochemistry, 5th ed., p. 367. New York : McGraw-Hill.
Na3AsS3 crystallizes in the cubic system with a = 8.566 ,~, space group P213. The structure was solved
and refined to a final R value of 0.032 for 320 independent single-crystal reflexions. The coordination
number of Na is six. The position of the unbound electron pair of As m is found at about 1.25 ,~ from
the As atom.