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12 – 13 December 2024

Berlin, Germany

Programme & Abstract book

Inaugural conference of the

European Society
for Spatial Biology
(ESSB e.V.)
Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

ESSB Founding Members:

Denis Schapiro Anja Hauser Christian Schürch

President Vice President and Conference Vice President and
President Treasurer

Raza Ali Leeat Keren Julio Saez-Rodriguez Sinem Saka

Want to become a member of the ESSB?

Join us at the Members´Assembly

on Thursday, 12 December 2024,
at 6:00 pm, Ballroom 3
Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

Inaugural conference of the European Society for Spatial Biology (ESSB e.V.)

12 – 13 December 2024, Berlin, Germany

Congress President

Venue Anja Hauser

Hotel & Conference Center Charité – Universitätsmedizin Berlin &

Titanic Chaussee Berlin German Rheumatology Research Center Berlin

Chausseestr. 30 (DRFZ),

10115 Berlin, Germany a Leibniz Institute; Germany

Contact Conference

Anja Hauser

Ute Hoffmann

Jacqueline Hirscher

E-mail: spatialbiologysociety@gmail.com ESSB Wlan

ESSB2024
Contact Industry Partners
Jacqueline Hirscher, ScienceEvents
jhirscher@berlin.de

European Society for Spatial Biology (ESSB e.V.)

Im Neuenheimer Feld 130.3
69120 Heidelberg
Deutsche Skatbank
IBAN: DE70 8306 5408 0005 4465 97
BIC/SWIFT Code: GENO DEF1 SLR

Contact: spatialbiologysociety@gmail.com

Website: spatialbiologysociety.eu
Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

Anja Hauser

Dear Friends of Spatial Biology,

It is an immense pleasure for me to welcome you to the inaugural conference of the

European Society for Spatial Biology here in the center of Berlin.

The ESSB is still a young society, it was only founded this year. Therefore, we were

all the more surprised and, in a positive sense, overwhelmed by the enthusiasm we

received during the preparation for this conference. The number of registrations

far exceeded our expectations. In addition to the great interest of participants from

academia, we are very grateful for the support from industry partners who make this event possible.

Together, this highlights the relevance and timeliness of the interdisciplinary, rapidly developing

field of spatial biology, as well as the need for scientific exchange and for meeting other scientists

working in this area.

I hope that with this conference we can create a forum for exactly those interactions and lay the foun-

dation for many more ESSB events that will advance this interesting and important field.

Now I wish all participants a successful conference - enjoy the science, immerse yourself in discus-

sions and meet old and new friends!

Anja Hauser

Congress President and ESSB Vice President

Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

DAY 1: Thursday, December 12, 2024

Titanic Hotel Chaussee, Ballroom 3

8:15 am Welcome
8:30 am Session 1 New Developments in Spatial Biology
▶ * Keynote speaker Joakim Lundeberg, Sweden: Resolving the tissue ecosystem into its components
▶ **Nicole Strittmatter, Germany: Studying disease states in cancer and infection using spatial metabolom-
ics
▶S
hort talk by Xavier Rovira Clavé, USA: In Situ Tracking of Clonal Evolution and Phenotypic Heterogeneity
in Tumors by Spatial Epitope Barcoding
▶S
hort talk by Carsten Hopf, Germany: Multimodal MALDI Lipid-Protein Imaging of Amyloid- Plaques and
Machine Learning reveal Alzheimer’s Disease Signatures

10:15 am Coffee break, posters & industry exhibition

11:00 am Session 2 - Image Analysis for Spatial Biology

▶ * *Carolina Wählby, Sweden: Spatial (transcript)omics – a joint mapping of tissue function and architec-
ture
▶S
hort talk by Jan Schröder, Germany: Deep Spatial Phenotyping of the Bone Marrow Microenvironment in
NPM1-Mutant Acute Myeloid Leukemia
▶S
hort talk by Malte Kuehl, Germany & Denmark: PathoPlex – Next-generation multiplexed image analysis

htime Raffle!
12:00 pm Lunch Symposium Akoya Biosciences ESSB Lunc
▶A
lessio Colombo, Akoya Biosciences: Ultrahigh-Plex and High-Throughput Spatial Biology Solutions: From
Discovery to the Clinic

12:30 pm Lunch, posters & industry exhibition

htime Raffle!
1:30 pm Lunch Symposium Miltenyi Biotec ESSB Lunc
▶K
atrin Schönborn & David Agorku, Miltenyi Biotec: Unlocking new insights in
colorectal cancer with spatial multiomic on the MACSima™ Platform

2:00 pm Session 3 - Machine Learning and Data Integration in Spatial Biology

▶ **Leeat Keren, Israel: Escalating high-dimensional imaging for cancer research Talk sponsored by Ionpath
▶S
hort talk by Josef Lorenz Rumberger, Germany: Automated classification of cellular expression in multi-
plexed imaging data with Nimbus
▶S
hort talk by Iva Buljan, Austria: Tissue-specific prediction of biological age from histopathological
images
Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

3:00 pm Coffee break, posters & industry exhibition

4:15 pm Session 4 - New Spatial Biology insights for disease and pathology

▶ * Keynote speaker Bernd Bodenmiller, Switzerland: Highly multiplexed imaging of tissues with subcellular
resolution by imaging mass cytometry
▶S
hort talk by Maria Puschhof, Germany: Molecular drivers of low- to high-grade transition in IDH-mutant
glioma
▶S
hort talk by Gesa Krueger, Germany: Modeling immune responses of cattle to mycobacteria using mag-
netic bioprinted granulomas

er Raffle!
5:30 pm Dinner Symposium - 10xGenomics ESSB Dinn
▶S
arah Taylor, 10X Genomics: Mapping Immune Cell Populations Using High-Definition Spatial
Technologies

6:00 pm Members´assembly

7:00 pm Poster session & get-together at the industry exhibition

Food and drinks will be provided.

ESSB Wlan
ESSB2024

*Keynote: 45 min (40+5), **Invited speaker: 30 min (25+5),

***Short talks selected from abstracts: 15 min (12+3)
Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

DAY 2: Friday December 13, 2024

Titanic Hotel Chaussee, Ballroom 3

provided!
8:15 am Short Breakfast Talk by Vizgen & Ultivue Breakfast Buffet will be
▶D
ries Van Hemelen und Friedrich Preusser: Merging Expertise: Vizgen and Ultivue Join Forces to Innovate in
Spatial Multi-Omics"

08:30 am Session 5 Spatial Immunology

▶ **Camilla Engblom, Sweden: Spatially resolving B cell clonal dynamics
▶S
hort talk by Raluca Niesner, Germany: MetaFLIMB – longitudinal in vivo
NAD(P)H fluorescence lifetime imaging of the femoral marrow
▶S
hort talk by Katharina Imkeller, Germany: Connecting the Spatial Architecture and Immune Function of
Tertiary Lymphoid Structures in Glial Tumors
▶S
hort talk by Vladimir Sukhov, USA: Advanced Spatial Analysis Highlights Immune Cell Organization in
Successful Tumor Rejection After Immune Checkpoint
Therapy
▶S
hort talk by Francesca Bosisio, Belgium: Omics Integration Reveals Spatial and Molecular Predictors of
Response to Anti-PD-1 Immunotherapy in Metastatic Melanoma
▶S
hort talk by Aysegül Adam, Germany: Spatial characterization of Innate Lymphoid Cells in oral inflamma-
tory diseases
10:15 am Coffee break, posters & industry exhibition

11:00 am Session 6 New Dimensions in Spatial Biology

▶ **Harsharan Singh Bhatia, Germany: Clear-Omics: Spatial molecular maps in optically cleared 3D intact
specimens
▶S
hort talk by Peter Androvic, Germany: Beyond Genes: Integrating Transcriptomics with Structure and
Metabolism to Map Neurodegeneration
▶S
hort talk by Jorge Trojanowski, Spain: Single-round Profiling by Amplification and Color Encoding
(SPACE)-FISH in 3D microvasculature on-chip

le!
htime Raff
12:00 Lunch Symposium - Lunaphore ESSB Lunc
▶D
aniel Azorin, ETH Zurich & Müge Akpinar, Lunaphore: Spatial multiomics for precision target identifica-
tion in the tumor microenvironment

12:30 pm Lunch, posters, industry exhibition

1:30 pm Lunch Symposium Standard BioTools hti me Raffle!

ESSB Lunc
▶M
elissa Klug, Standard BioTools™: Whole Slide Imaging Modes for Imaging Mass Cytometry Reveal Cellu-
lar Diversity of the Tumor Immune Microenvironment in Mouse Glioblastoma
Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

02:00 pm Session 7 Tumor Microenvironment

▶ **Raza Ali, UK: Charting the intact breast tumour microenvironment
▶ * *Oliver Stegle, Germany, Data infrastructures for spatial omics and advances in cell segmentation
▶S
hort talk by Spencer Watson, Switzerland: Investigating Glioblastoma Recurrence with Spatial Multi-Om-
ics
▶S
hort talk by Ann-Marie Baker, UK: Spatial analysis reveals reshaping of tumour-immune dynamics at the
transition to invasive colorectal cancer
▶S
hort talk by Christina Schniederjohann, Germany: Microenvironmental Factors Impacting Chemotherapy
Response in B-NHL
3:45 pm Coffee break, posters & industry exhibition

04:15 pm Session 8 Visions for Spatial Biology

Talk sponsored by Ionpath

▶ *Keynote speaker: Peter Sorger, USA: Spatial profiling of human tissues for discovery and diagnosis

5:15 pm Poster Award Ceremony, Concluding remarks and Farewell

ESSB Wlan
ESSB2024

*Keynote: 45 min (40+5), **Invited speaker: 30 min (25+5),

Short talks selected from abstracts: 15 min (12+3)
Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

The conference would not be possible without sponsorship.

We thank our Gold Supporting Members

We thank our Conference Sponsors

Inaugural conference of the European Society for Spatial Biology (ESSB), 2024 Berlin

Special thanks go to:

The abstract booklet is Two invited speakers are

Travel Grant Awardees

We are pleased to announce the following EFIS

Travel Scholarship Awardees:

Erison Santos, Brazil

Noel Thombiano, Burkina Faso
Sarthak Sahoo, India
Sefiyat Odunola Adebiyi, South Africa
Sogunmez Erdogan Nuray, Turkey
Anna Pascual-Reguant, Spain
Ada Junquera, Finland