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4 - Exploring Data

This document provides an overview of data exploration techniques, including summary statistics and visualization. It discusses exploring the characteristics of data through preliminary analysis to better understand the data. Techniques covered include calculating summary statistics like mean, median, range and variance, as well as visualizing data through histograms, box plots, scatter plots, contour plots, matrix plots and parallel coordinates plots. These techniques are demonstrated using the Iris data set.

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Bryan Wahyu
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© © All Rights Reserved
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Download as PPTX, PDF, TXT or read online on Scribd
75 views

4 - Exploring Data

This document provides an overview of data exploration techniques, including summary statistics and visualization. It discusses exploring the characteristics of data through preliminary analysis to better understand the data. Techniques covered include calculating summary statistics like mean, median, range and variance, as well as visualizing data through histograms, box plots, scatter plots, contour plots, matrix plots and parallel coordinates plots. These techniques are demonstrated using the Iris data set.

Uploaded by

Bryan Wahyu
Copyright
© © All Rights Reserved
Available Formats
Download as PPTX, PDF, TXT or read online on Scribd
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BAB 3

EXPLORING DATA
CREATED BY : ARIF DJUNAIDY (FTIF - ITS)
PRESENTED BY

: I PUTU GEDE HENDRA SUPUTRA, S.KOM. M.KOM

11 Maret 2015

OUTLINE

Summary Statistics
Visualization

WHAT IS DATA EXPLORATION?


A preliminary exploration of the data to
better understand its characteristics.
Key motivations of data exploration include
Helping to select the right tool for preprocessing or

analysis
Making use of humans abilities to recognize patterns

People can recognize patterns not captured by data analysis tools

Related to the area of Exploratory Data Analysis

(EDA)

Created by statistician John Tukey


Seminal book is Exploratory Data Analysis by Tukey
A nice online introduction can be found in Chapter 1 of the

NIST Engineering Statistics Handbook

http://www.itl.nist.gov/div898/handbook/index.htm

TECHNIQUES USED IN DATA


EXPLORATION
In EDA, as originally defined by Tukey
The focus was on visualization
Clustering and anomaly detection were viewed as

exploratory techniques
In data mining, clustering and anomaly detection are
major areas of interest, and not thought of as just
exploratory not discussed further in this chapter

In our discussion of data exploration, we focus on


Summary statistics
Visualization
Online Analytical Processing (OLAP) next week

IRIS SAMPLE DATA SET


Many of the exploratory data techniques are

illustrated with the Iris Plant data set.

Can be obtained from the UCI Machine Learning

Repository
http://www.ics.uci.edu/~mlearn/MLRepository.html

From the statistician Douglas Fisher


Three flower types (classes):
Setosa

Virginica

Versicolour

Four (non-class) attributes

Sepal width and length

Petal width and length

Virginica. Robert H. Mohlenbrock.


USDA NRCS. 1995. Northeast wetland
flora: Field office guide to plant
species. Northeast National Technical
Center, Chester, PA. Courtesy of USDA
NRCS Wetland Science Institute.

SUMMARY STATISTICS
Summary statistics are numbers that

summarize properties of the data


Summarized properties include frequency,

location and spread

Examples: location - mean


spread - standard
deviation

Most summary statistics can be calculated in a

single pass through the data

FREQUENCY AND MODE


The frequency of an attribute value is the

percentage of time the value occurs in


the
data set
For example, given the attribute gender and a representative

population of people, the gender female occurs about 50% of the time.

The mode of a an attribute is the most frequent attribute

value
The notions of frequency and mode are typically used with
categorical data

PERCENTILES
For continuous data, the notion of a

percentile is more useful.


Given an ordinal or continuous attribute x
and a number p between 0 and 100, the pth
percentile is a value xp of x such that p% of
the observed values of x are less than xp
For instance, the 50th percentile is the value

x50% such that 50% of all values of x are less


than x50%

MEASURES OF LOCATION: MEAN


AND MEDIAN
The mean is the most common measure of the

location of a set of points.


However, the mean is very sensitive to outliers.
Thus, the median or mean is also commonly used.

MEASURES OF SPREAD: RANGE AND


VARIANCE
Range is the difference between the max and min
The variance or standard deviation is the most

common measure of the spread of a set of points.

However, this is also sensitive to outliers, so that

other measures are often used: Absolute Average


Deviation (AAD), Median Absolute Deviation (MAD),
and interquartile range

VISUALIZATION
Visualization is the conversion of data into a visual

or tabular format so that the characteristics of the


data and the relationships among data items or
attributes can be analyzed or reported.
Visualization of data is one of the most powerful
and appealing techniques for data exploration.
Humans have a well developed ability to analyze large

amounts of information that is presented visually


Can detect general patterns and trends
Can detect outliers and unusual patterns

EXAMPLE: SEA SURFACE TEMPERATURE


The following shows the Sea Surface Temperature (SST) for

July 1982
Tens of thousands of data points are summarized in a single

figure

REPRESENTATION
Representation is the mapping of information to a

visual format
Data objects, their attributes, and the relationships
among data objects are translated into graphical
elements such as points, lines, shapes, and colors.
Example:
Objects are often represented as points
Their attribute values can be represented as the position

of the points or the characteristics of the points, e.g.,


color, size, and shape
If position is used, then the relationships of points, i.e.,
whether they form groups or a point is an outlier, is easily
perceived.

ARRANGEMENT
Arrangement is the placement of visual elements within a

display
Can make a large difference in how easy it is to understand

the data
Example:

SELECTION

Selection is the elimination or the de-emphasis of certain

objects and attributes


Selection may involve the choosing a subset of attributes
Dimensionality reduction is often used to reduce the number of

dimensions to two or three


Alternatively, pairs of attributes can be considered

Selection may also involve choosing a subset of objects


A region of the screen can only show so many points
Can sample, but want to preserve points in sparse areas

VISUALIZATION TECHNIQUES: HISTOGRAMS


Histogram
Usually shows the distribution of values of a single variable
Divide the values into bins and show a bar plot of the number of

objects in each bin.


The height of each bar indicates the number of objects
Shape of histogram depends on the number of bins

Example: Petal Width (10 and 20 bins, respectively)

TWO-DIMENSIONAL HISTOGRAMS
Show the joint distribution of the values of two attributes
Example: petal width and petal length

VISUALIZATION TECHNIQUES: BOX PLOTS

Box Plots
Invented by J. Tukey
Another way of displaying the distribution of data
Following figure shows the basic part of a box plot

outlier

90th percentile

75th percentile
50th percentile
25th percentile

10th percentile

EXAMPLE OF BOX PLOTS

Box plots can be used to compare attributes

VISUALIZATION TECHNIQUES:
SCATTER PLOTS
Scatter plots
Attributes values determine the position
Two-dimensional scatter plots most common, but can have

three-dimensional scatter plots


Often additional attributes can be displayed by using the
size, shape, and color of the markers that represent the
objects
It is useful to have arrays of scatter plots can compactly
summarize the relationships of several pairs of attributes
See example on the next slide

SCATTER PLOT ARRAY OF IRIS


ATTRIBUTES

VISUALIZATION TECHNIQUES:
CONTOUR PLOTS
Contour plots
Useful when a continuous attribute is measured

on a spatial grid
They partition the plane into regions of similar
values
The contour lines that form the boundaries of
these regions connect points with equal values
The most common example is contour maps of
elevation
Can also display temperature, rainfall, air
pressure, etc.
An example for Sea Surface Temperature (SST) is

provided on the next slide

CONTOUR PLOT EXAMPLE: SST DEC, 1998

Celsius

VISUALIZATION TECHNIQUES:
MATRIX PLOTS
Matrix plots
Can plot the data matrix
This can be useful when objects are sorted according to

class
Typically, the attributes are normalized to prevent one

attribute from dominating the plot


Plots of similarity or distance matrices can also be useful
for visualizing the relationships between objects
Examples of matrix plots are presented on the next two
slides

VISUALIZATION OF THE IRIS


DATA MATRIX

standard
deviation

VISUALIZATION OF THE IRIS


CORRELATION MATRIX

VISUALIZATION TECHNIQUES:
PARALLEL COORDINATES
Parallel Coordinates
Used to plot the attribute values of high-dimensional data
Instead of using perpendicular axes, use a set of parallel

axes
The attribute values of each object are plotted as a point
on each corresponding coordinate axis and the points are
connected by a line
Thus, each object is represented as a line
Often, the lines representing a distinct class of objects
group together, at least for some attributes
Ordering of attributes is important in seeing such
groupings

PARALLEL COORDINATES PLOTS FOR


IRIS DATA

OTHER VISUALIZATION TECHNIQUES


Star Plots
Similar approach to parallel coordinates, but axes radiate

from a central point


The line connecting the values of an object is a polygon

Chernoff Faces
Approach created by Herman Chernoff
This approach associates each attribute with a

characteristic of a face
The values of each attribute determine the appearance of
the corresponding facial characteristic
Each object becomes a separate face
Relies on humans ability to distinguish faces

STAR PLOTS FOR IRIS DATA

Setosa

Versicolour

Virginica

CHERNOFF FACES FOR IRIS DATA

Setosa

Versicolour

Virginica

THE END

THANK YOU

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