Enzymes Lecture
Enzymes Lecture
Enzymes Lecture
ENZYMES
biologic proteins that catalyze biochemical
reactions without altering the equilibrium point of
the reaction or being consumed or changed in
composition
Enzyme Nomenclature
Practical or Trivial Name
Systematic Name
Practical/Trivial name:
According to the name of the substrate with the
addition of the suffix “ase”
Examples:
Enzymes acting on lipids – lipase
Enzymes acting on proteins - protease
Practical/Trivial name:
According to the type of reaction they catalyzed.
Examples:
Transfer of amino group from substrate to another -
transferase
Transfer to phosphate group from a high energy
phosphate compound to its substrate - kinase
Effect of hydrolysis on phosphate esters – phosphatase
Removal of hydrogen atoms from its substrate -
dehydrogenase
Systematic Name
According to the numerical designation given by
the Enzyme Commission (E.C.)
Examples:
E. C. 1. 1. 1. 7 for lactate dehydrogenase
E. C. 3. 2. 1 .1 for amylase
E. C. 2. 6.1. 2 for alanine aminotransferase
The first number defines the class to which the
enzyme belongs, while the next two numbers
indicate subclass and sub class to which the
enzyme is assigned. The last number Is a specific
serial number to each enzyme In its sub-class.
GENERAL CLASSIFICATION OF
ENZYMES:
1. Oxidoreductases - removal or addition of
electrons (reduction-oxidation ["redox"] reaction.)
Examples:
(a) oxidase - cytochrome oxidase
(b) dehydrogenase
lactate dehydrogenase (LDH)
malate dehydroenase (MDH)
isocitrate dehydrogenase (ICD)
GENERAL CLASSIFICATION OF
ENZYMES:
2. Transferase - catalyze the transfer of a
chemical group from one substrate to another
Examples:
(a) aspartate aminotransferase (AST)
(b) alanine aminotransferase (ALT)
(c) cretine kinase (CN) or
creatine phosphokinase (CPK)
(d) gamma glutamyl transferase (GGI)
(e) ornithine carbamyl transferase (OCT)
GENERAL CLASSIFICATION OF
ENZYMES:
3. Hydrolase - hydrolyze the splitting of a bond by the addition of water
(hydrolysis reaction)
Examples:
(a) esterases
acid phosphatase (ACP)
alkaline phosphatase (ALP)
cholinesterase (CLS)
lipase (LPS)
(b) peptidases
trypsin (PTS)
pepsin (PPS)
leucine aminopeptidase (LAP)
(c) glycosidase
amylate, kAMS)
amylo 1,6 glycosidase
galactoxsdases
GENERAL CLASSIFICATION OF
ENZYMES:
4. Lyases - remove groups from substrate without
hydrolysis, leaving only double bonds in the
molecular structure of the product.
Examples
(a) aldolases
(b) glutamate decarboxylase
(c) pyruvate decarboxyiase
(d) tryptophan decarboxylase.
GENERAL CLASSIFICATION OF
ENZYMES:
5. Isomerases - catalyzes the intramolecular
rearrangement of the substrate compound.
Examples:
(a) glucose phosphate isomerase
(b) ribose phosphate lsomerase
GENERAL CLASSIFICATION OF
ENZYMES:
6. Ligases (Synthetases) - joins two substrate molecules
together using the energy released from
hydrolyzing a pyrophosphate bond to a high-
energy phosphate compound.
TERMS ASSOCIATED WITH ENZYMES:
Holoenzyme -an active substance formed by
combination of a coenzyme (cofactor) and
apoenzyme.
Apoenzyme - the protein portion subject to
denaturation, in which the enzyme loses its activity.
Catalytically inactive protein when cofactor is
removed. They are heat labile and dialyzable.
Isoenzyme - enzymes present !it an individual with
similar enzymatic activity but differ in their physical
biochemical and immunologic characteristics
TERMS ASSOCIATED WITH ENZYMES:
Metalloenzyme - enzyrne whose metal ions are
intrinsically part the molecule such as catalases and
cytochrome oxidase.
Proenzyme - inactive precursor of enzymes, also
referred to as zymogens
Substrates - substances acted upon by the
enzymes which are specific for each of their
particular enzyme.
Cofactors - these are non-protein
substance/compounds needed by an enzyme
before enzymatic activity can be manifested.
Cofactors are thermostable and dialyzable.
Cofactor
Organic molecule - Coenzyme.
It hastens enzymatic reaction but undergoes a change or
is consumed to another product.
Examples:
NAD – nicotinamide Adenine dinucleotide
NADP - nicotinamide Adenine dinudeotide
phosphate
Cofactor
Metal ion - Activator
In such, the metal ion may serve as:
a bridge to hold the substrate and enzyme together
the primary catalytic center
stabilizing agent In the conformation for catalytic activity.
Examples:
Amylase Cl , Br-
LDH Zn2
LipaseCa++
ENZYME KINETICS:
A. An enzyme (E) catalyses a reaction by combining with its
substrate (S) to create an enzyme—substrate complex (ES).
The enzyme-substrate complex according to Michaelis and
Menten can either dissociate back to E + S or breakdown to
product (P) and free enzyme (provided that the product has
a low affinity for the enzyme).
THE MICHAELIS-MENTEN EQUATION GIVES THE
MEANS TO DETERMINE TOTAL ENZYME
CONCENTRATION IN SERUM AND OTHER BODY
FLUIDS
Accurately describes virtually all single-substrate
enzyme-catalyzed reactions and many bisubstrate
reactions in which the concentration of one substrate
is constant throughout the course of the reaction.
Enzyme Specificity
Emil Fisher's LOCK and KEY THEORY
It is based on the rigid enzyme molecule into which
the substrate fits. The shape of the key (substrate)
must conform into the lock (enzyme).
Koshland's INDUCED FIT THEORY
It is based on the attachment of a substrate to the
active site of an enzyme, which then causes
conformational changes in the enzyme. This theory Is
more acceptable because the protein molecule Is
flexible enough to allow conformational changes
and also allow some explanation on the influence of
hormones on enzymatic activity.
Types of Reaction Order:
1. Zero Order Reaction - is the rate of reaction linear
with time, independent of concentration of substrate
and directly proportional to enzyme concentration.
2. First Order Reaction - the rate of reaction is
determined by the concentration of substrate.as well
as of enzymes (the rate of reaction changes
continuously with time as the substrate is consumed.
Factors Affecting Enzyme Reactions:
Enzyme concentration. - An increase in the
concentration of enzyme produces an increase in
the rate of reaction, provided that the other
conditions remain the same and that a constant
but excess amount of substrate Is present.
Meaning, if the amount of enzyme is doubled, the
reaction proceeds twice as fast.
Factors Affecting Enzyme Reactions:
Substrate Concentration - An increase in the
concentration of substrate produces also an
increase in the rate of reaction, provided all other
conditions are kept constant However, the rate of
the reaction reaches a maximal value at a
particular concentration of substrate, and higher
concentrations of substrate do not result in
increased rate of reaction (Saturation kinetics).
Factors Affecting Enzyme Reactions:
Temperature - The rate of any chemical reaction is
usually increased 2-3 times for every I0 degrees
Celcius rise in temperature.
Factors Affecting Enzyme Reactions:
Hydrogen Ion Concentration or pH - Enzymatic
reactions proceed at their fastest rate at an
optimum pH and are considerably slowed or even
stopped at higher or lower pH values.
ENZYME INHIBITION:
Competitive Inhibitor - These are substances that
compete with the substrate for enzyme binding
because they are chemically analogous to the
substrate and bind to the active sites of enzymes
ENZYME INHIBITION:
Non- competitive Inhibitor. - These are substances
that do not resemble the substrate and bind to the
enzyme in areas other than the active site
ENZYME INDUCTION:
This phenomenon states that a certain enzyme has
the ability to adapt to their biochemical systems
Types of Enzyme Assays
Endpoint Analysis
Reaction is initiated by addition of substrate
Reaction is allowed to proceed for a period of time
• Shinowara
Inorganic phosphate +
Beta-glycerophosphate
• Jones glycerol
• Reinhart
Hyperparathyrodism
Myelocytic leukemia
Aminotransferases
Catalyzes the transfer of an amino group of one
amino acid to a hydrocarbon to form a different
amino acid
Aminotransferases are of two types:
Aspartate Aminotransferase (EC 2.6.1.1) or AST
Alanine Aminotransferase (EC 2.6.1.2) or ALT
Cofactor pyridoxal-S'-phosphate or P-5’-P
ALT
L-alanine + alpha ketoglutarate pyruvate +
glutamate
AST
L-aspartate + 2-oxoglutarate oxaloacetate +
glutamate
Specimen Stability
The half-life of AST is 17+ 5 hours while ALT has a
half-life of 47 +10 hours.
Specimen
AST is stable in serum at refrigerator temperature for up
to three weeks, indefinitely if frozen. ALT has the same
stability but markedly decreases with freezing.
Specimens for AST and ALT are stable in whole blood for
up to 12 to 24 hours, but increase with time due to
release from red blood cells.
Optimum pH: 7.4
AST (Aspartate Aminotransferase)
Involved in the transfer of an amino group between
aspartate and α-ketoacids with the formation of
oxaloacetate and glutamate
Has 2 isoenzymes fractions: cytoplasm and
mitochondrial
Major tissue source: cardiac tissue, liver and skeletal
muscles
Other sources: kidney, pancreas and RBC
Reference values: (5-37 U/L)
Method of determination
Karmen Method – pH 7.5; 340 nm
Uses malate dehydrogenase and monitors the
change in absorbance AST
Aspartate + α-ketoglutarate oxaloacetate +
glutamate
MD
Oxaloacetate + NAD + H malate + NAD
Clinical Significance
(Increased AST activity)
In the evaluation of myocardial infarction,
hepatocellular disorders and skeletal muscle
involvement
MI AST level is usually 4-10 times the upper limit
of normal
Diagnosis of chronic alcohol abuse and drug
hepatotoxicity
Pulmonary infarction, pericarditis, acute hepatitis
Clinical Significance
(Decreased AST activity)
Decreased level is seen during pregnancy
ALT (Alanine aminotransferase)
Has enzymatic activity similar to AST
Highest concentration is in the liver
Other sources: kidney, pancreas, RBC, heart,
skeletal muscles, lungs
Reference Values: 6-37 U/L
Method of determination
Coupled Enzymatic reaction: pH 7.5; 340 nm
Reitman-Frankel Method
ALT
Alanine + α-ketoglutarate pyruvate + glutamate
pyruvate + NAD + H lactate + NAD
LD
Measurement
Aminotransferase activity measurement is done
by coupled enzymatic reactions, using NADH as
the final reaction product.
Reagents with NH4 will give falsely increased
ALT and AST owing to the conversion of NADH to
NAD by the ammonium ion.
International Federation of Clinical Chemistry
(IFCC) recommended that methods should include
P-5'-P in the reagents.
Diagnostic significance
Significant in the evaluation of hepatic disorders
Diagnosis of acute or chronic viral hepatitis ALT
increases to a greater degree than AST
Monitors the course of hepatitis treatment and the
effect of drug therapy
Aminotransferase levels are altered in:
Hepatocyte injury (increase in AST, and ALT but to
a lesser degree)
Muscle injury (increase in both enzymes)
Kidney infarcts (increase in both enzymes)
Renal failure (falsely lowered)
Creatine Kinase (EC 2.7.3.2) or CK
Involved in the reversible phosphorylation of
creatine by ATP
CK is an enzyme is involved in energy storage of
tissues.
In the course of active muscle contraction. ATP is
used up and creatine phosphate is converted by CK
to creatine and ATP. This process allows continued
contraction.
During periods of rest, ATP is converted to creatine
phosphate by CK to serve as energy reservoir.
Creatine kinase requires magnesium as a cofactor.
CK Isoenzymes
CK1 or CK-BB (found predominantly in the brain and
smooth muscles)
CK2 or CK-MB (normal muscle contains 14% to 20% of
CK-MB; in skeletal muscle, CK-MB comprises 0% to 1%
of total CK in type 1 fibers, and 2% to 6% of total CK
in type 2 fibers).
CK3 or CK-MM. (also found in skeletal muscles)
Macro-CK (an oligomer present in mitochondria and is
seldom released into circulation)
Reference Value: 15-160 U/L Male
15-130 U/L Female
6% of total CK CK-MB
CK Isoenzymes
CK-BB most rapidly moving isoenzyme
CK-MB hybrid
CK-MM slowest and most common form
Diagnostic significance
AMI
Duchenne’s Muscular dystrophy highest elevation
of total CK
Measurement
Electrophoresis is the method of choice. All
isoenzymes can be measured at one time because
of technical difficulties, it has been seldom used.
Immunoinhibition assays for CK-MB uses antibodies
against the CK-M subunit. And residual CK activity
is measured.
Mass immunoassay is the most commonly used
method for measuring CK-MB. It may use two
different antibodies or by using the "Conan"
monoclonal antibody, specific for CK-MB.
Methods of Determination
Tanzer-Gilvarg Assay (Forward Direct method) – pH
9.0 @ 340 nmCPK
Creatine + ATP Creatine PO4 + ADP
PK
ADP + phosphoenopyruvate Pyruvate + ATP
LD
Pyruvate + NADH Lactate + NAD
Methods of Determination
Oliver-Rosalki method (Reverse/indirect method) –
pH 6.8 @ 340 nm; most commonly used; faster
reaction
CPK
Creatine PO4 + ADP Creatine + ATP
HK
ATP + Glucose ADP + glucose-6-PO4
G-6-PD
Glucose-6-PO4 + NADP 6-phosphogluconate
+ NADPH
Considerations in CK Assays:
CK is light sensitive
Anticoagulants (Oxalates and Fluoride) inhibits
CK action
CK in serum is very unstable and is rapidly lost
during storage activity can be regenerated by
adding substances with –SH groups (cysteine,
dithiothreitol, mercaptoethanol)
Exercise and IM injections causes CK elevations
CK levels are increased in:
Progressive muscular dystrophy
Poliomyelitis
Acute psychosis
Alcoholic myopathy
Delirium tremens
Hypothyroidism
Malignant hyperthermia
Acute cerebrovascular disease
Trichinosis and dermatomyositis
Clinical Significance:
Increases in CK MB may be due to:
Cardiac or skeletal muscle damage
Chronic myopathies
Chronic renal failure
Acute respiratory exertion
Clinical Significance:
CK-BB is increased in:
Smooth muscle injury (intestinal ischemia)
Malignancies (prostate cancer, small cell carcinoma
of the lung, and intestinal malignancies).
Clinical Significance:
Macro-CK2 is present in
Malignancies
Myocardial infarction (when Macro-CK2 is present,
it is usually associated with poor prognosis)
MI (less than 5% of the causes)
Gamma- Glutamyl Transferase (EC
2.3.2.1) or GGT
GGT catalyzes the transfer of glutamyl moiety
from peptides to amino acids, other peptides, or
water molecules.
GGT are plasma membrane bound on cells that
has high secretory or absorptive properties (such
as liver, canaliculi cells proximal renal tubules,
intestinal epithelium, and prostate gland).
Gamma- Glutamyl Transferase (EC
2.3.2.1) or GGT
Half life of GGT is about 7 to 10 days. In
alcoholic liver disease, half-life increases to 28
days.
Measurement
Szasz Assay
GGT activity is measured by cleavage of chromogen
o-carboxyl p-nitroaniline from a glutamate modified
form of the compound.
GGT elevations
Liver damage is the major source of GGT release.
Smoking Moderate smoking raises GGT levels
by 10%, while heavy smoking by 20%.
Medications increase GGT levels up to five
times normal, these drugs include ethanol,
phenytoin, barbiturates, carbamazepine, and
valproic acid.
GGT decrease
Pregnancy First trimester of pregnancy causes
25% decrease in GGT levels
Oral contraceptives reduce GGT by 20%.
Uses of GGT
Evaluation of liver injury (primary use)
Test for alcoholic abuse (It is abnormal in only
30%, 50% of those consuming excessive amounts
of alcohol. More often elevated in maintenance
drinkers rather than alcohol drinkers)
Lactate Dehydogenase (EG 1.1.1.27)
or LD
LD is a zinc-containing enzyme and its activity is
part of the glycolytic pathway.
LD is a tertramer of two active subunits, H (for
heart) and M (muscle). Combinations of the subunits
produce five isoenzymes.
LD1 (HHHH; H4)
LD2 (HHHM; H3M)
LD3 (HHMM; H2M2)
LD4 (HMMM; HM3)
LD5 (MMMM; M4)
LD
Normal electrophoretic pattern
Allbands of isoenzymes are low
LD2 is always higher than LD1
Increased Globulin
Hepatic Disorders
Biliary Tract Obstruction
Increased ALP, Bilirubin (B2), GGT, 5’-nucleotidase, LAP
Enzymes as Cardiac Markers
Enzymes for Myocardial Infarction
Appear in Disappearanc
Peak
Serum e
CK 4-6 hrs after 12-24 hrs 1-2 days
AST 6-8 hrs after 48 hrs 4-5 days
8-10 hrs
LD 72 hrs 7-12 days
after