Chapter 2 MOLECULAR ABSORPTION SPECTROS
Chapter 2 MOLECULAR ABSORPTION SPECTROS
Chapter 2 MOLECULAR ABSORPTION SPECTROS
SPECTROSCOPY; THEORY,
INSTRUMENTATION &
APPLICATION (CHAPTER 2)
CHM 260
MASTURA IBRAHIM
UiTM Perak (Kampus Tapah)
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Lesson Outcomes
2.1 COMPONENTS OF
INSTRUMENTAL FOR
OPTICAL SPECTROSCOPY
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• Emission Spectroscopy
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1. Radiation Sources
• Generate a beam of radiation that is stable and has
sufficient power
• 1. Continuum Sources:
Emit radiation over a broad wavelength range and the
intensity of the radiation changes slowly as a function of
wavelength.
This type of source is commonly used in UV, visible and
IR instruments
- Deuterium lamp is the most common UV source.
- Tungsten lamp is the most common visible source.
- Glowing inert solids are common sources for IR
instruments.
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• 2. Line Sources:
Emit a limited number lines or bands of radiation at
specific wavelength
Used in atomic absorption spectroscopy
Usually provide radiation in the UV and visible region of
the EM spectrum
Types of line source:
- Hollow cathode lamps
- Electrodeless discharge lamps
- Lasers-Light – amplification by stimulated emission of
radiation
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(Source: http://www.saylor.org/courses/chem108)
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2. Sample Containers
• Sample containers usually is called cells or cuvettes,
must have side/windows that are transparent in the
spectral region of interest.
• There are few types of cuvettes:
1. quartz or fused silica (below 350nm)
required for UV & VIS region
• Examples of sample cells for UV/Vis spectroscopy. From left to right (with path lengths in parentheses), rectangular plastic cuvette (10.0 mm), rectangular quartz cuvette (5.000 mm), rectangular quartz,
cuvette (1.000 mm), cylindrical quartz cuvette (10.00 mm), cylindrical quartz cuvette (100.0 mm). Cells often are available as a matched pair, which is important when using a double-beam instrument .
(Source: http://www.saylor.org/courses/chem108)
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3. Wavelength Selectors
• Wavelength selectors provides a limited, narrow,
continuous group of wavelengths called a band
• Two types of wavelength selectors:
1. Filters
- Two types of filters:
i. Interference Filters
ii. Absorption Filters
2. Monochromators
- Wavelength selector that select a specific wavelength
- Used in most scanning spectrometers
including UV, visible, and IR instruments.
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1. Photon Detectors:
- Commonly useful in ultraviolet, visible and near
infrared instruments
- Several types of photon detectors are available:
i) Vacuum phototubes
ii) Photomultiplier tubes
iii)Photovoltaic cells
iv)Silicon photodiodes
v) Diode array transducers
vi)Photoconductivity transducers
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1. Thermal Detectors:
- Used for infrared spectroscopy because photons in the
IR region lack the energy to cause photoemission of
electrons
- Three types of thermal detectors :
i) Thermocouples
ii) Bolometers
iii)Pyroelectric transducers
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Summary
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Info:
• SPECTROMETER
is a that employs a monochromator or polychromator in
conjunction with a transducer to convert the radiant
intensities into electrical signals.
• SPECTROPHOTOMETER
is a spectrometer that allow measurement of the ratio of
the radiant powers of two beams, a requirement to
measure absorbance (recall that A=-log Po/P)
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• Single-Beam Instruments
• Double-Beam instruments
• Multichannel Instruments
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ADVANTAGES:
•Suited for quantitative absorption measurements at a
single wavelength
•Simplicity of instrumentation, low cost, ease of
maintenance
DISADVANTAGES:
• Two separate readings has to be made on the light.
This results in some error because the fluctuations in the
intensity of the light do occur in the line voltage, the power
source and in the light bulb between measurements.
• Changing of wavelength is accompanied by a change
in light intensity. Thus spectral scanning is not possible.
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• Double beam:
1. Radiation source
2. Filter/monochromator (λ selector)
3. Cells
4. Detector
5. Readout device
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• ADVANTAGES:
• Compensate for all but most short-term fluctuations in the
radiant output of the source as well as for drift in the
transducer and amplifier
• Compensate for wide variations in source intensity with λ.
• Continuous recording of transmittance or absorbance
spectra.
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Multichannel:
•Radiation is focused upon the sample then pasess into the
monochromator with a fixed grating.
•The dispersed radiations falls on transducer
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Instrumentation for IR
Spectrophotometers:
• Dispersive Instruments
• Fourier Transform Instruments (FTIR)
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Dispersive Instruments
• Generate a beam with sufficient power in the λ region of
interest to permit ready detection & measurement.
• Provide continuous radiation which made up of all λ’s
with the region (continuum source).
• Provide stable output for the period needed to measure
both P0 and P.
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FTIR
Why FTIR is developed?
• To overcome limitations encountered with the dispersive
instruments.
• Dispersive IR spectrophotometer has slow scanning
speed due to measurement of individual molecules/atom.
• It utilize the use of an interferometer.
ADVANTAGES:
• High sensitivity, resolution,
• Simpler mechanical design
• Quick data acquisition
• More accurate wavelength calibration
• Better light-gathering power
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Inferometer
• Special instrument which can read IR frequencies
simultaneously.
• Faster method than dispersive instrument.
• Interferograms are transformed into frequency
spectrums by using mathematical technique called
Fourier Transformation.
FT
Calculations
interferograms IR spectrum
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2.3 ULTRAVIOLET-VISIBLE
SPECTROSCOPY
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Organic Inorganic
compounds species
Charge transfer
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Absorbing Species
• Organic compound
Chemical compound whose molecule contain carbon.
Example C6H6, C3H4
• Inorganic species
Chemical compound that does not contain carbon.
Example transition metal, lanthanide and actinide
elements
• Charge transfer
A complex where one species is an electron donor and
the other is an electron acceptor.
Example Iron(III) thiocyanate complex
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• In molecules, instead
consist of electronic
level, it also comprise
of vibrational and
rotational sub-levels.
• Transitions between
these molecular
energy levels will result
in band spectra.
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Type of Transitions
• There are 3 types of electronic transitions
1. σ, п and n electrons
2. d and f electrons
3. Charge transfer electrons
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H + O + H H O H or H O H
lone pairs(n)
O C O or O C O
N N or N N
Sigma ()electron
• Electrons involved in single bonds such as those
between carbon and hydrogen in Alkanes.
• These bonds are called sigma, σ bonds.
• The amount of energy required to excite electrons in
σ bond is more than UV photons wavelength.
Therefore, alkanes and other saturated compounds
(compounds with only single bonds) do not absorb UV
radiation.
• As a result, Alkanes such as hexane, C6H14 are frequently
very useful as transparent solvents for the study of other
molecules.
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Pi () electron
• Electrons involved in double and triple bonds
(unsaturated).
• These bonds involve a п bond.
• п bond exists in alkenes, alkynes, conjugated olefins
and aromatic compounds.
• Electrons in п bonds are excited easily. These
compounds commonly absorb UV or visible photons.
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H
CH2CH3 H H
H C H
C C H C C
C C C C H
H C H
H H
H
Ethylbenzene Benzene 1,3-butadiene
(aromatics & alkenes) (conjugated olefins)
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σ and π orbitals
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Unoccupied levels
Occupied levels
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Unoccupied levels
Occupied levels
Molecular orbitals
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alkanes
carbonyls
Unsaturated compouds.
Energy
n
n O, N, S, halogens
n carbonyls
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→* transitions
• Never observed in normal UV/Vis work.
• The maximum absorption are below than 150 nm.
• The energy required to induce a σ→σ* transition is too big
(high energy) (see the arrow in energy level diagram).
• Eg:
Methane at 125 nm, Ethane at 135 nm
• This type of absorption corresponds to breaking bonds
such as C-C, C-H, C-O, C-X, ……….
n→* transitions
• Saturated compounds that contain atoms with unshared
electron pairs.
• Compounds containing O, S, N and halogens can absorb
via this type of transition.
• Absorptions are typically in the 150 -250 nm region and
are not very intense.
• ε range: 100 – 3000 Lcm-1mol-1
• Some examples of absorption due to n→σ* transitions
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n→* transitions
• Unsaturated compounds containing atoms with
unshared electron pairs.
• These result in some of the most intense absorption
in 200 – 700 nm region.
• ε range: 10 – 100 Lcm-1mol-1
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→* transitions
• Unsaturated compounds to provide the orbitals.
• These result in some of the most intense absorption
in 200 – 700 nm region.
• ε range: 1000 – 10,000 Lcm-1mol-1
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Chromophores
• Unsaturated organic functional groups that absorb in
the UV/VIS region.
• Contains electrons with relatively low excitation
energies
Auxochromes
• Groups of atoms such as –OH, -NH2 & halogens that
attached to the double bonded atoms cause the
normal chromophoric absorption to occur at longer λ
(red shift)
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Effect of Multichromophores on
Absorption
• More chromophores in the same molecule cause
bathochromic effect ( shift to longer ) and
hyperchromic effect (increase in intensity).
• In conjugated chromophores, * electrons are
delocalized over larger number of atoms. This cause a
decrease in the energy of →* transitions and an
increase in due to an increase in probability for
transition.
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Important terminologies
• hypsochromic shift (blue shift)
- Absorption maximum shifted to shorter λ
1. 3d & 4d electrons
• 1st and 2nd transition metal series for example Cr, Co,
Ni & Cu.
• Absorb broad bands of VIS radiation.
• Absorption involved transitions between filled and
unfilled d-orbitals with energies that depend on the
ligands such as Cl-, H2O, NH3 or CN- which are bonded
to the metal ions.
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2. 4f & 5f electrons
•Ions of lanthanide and
actinide elements.
•Their spectra consists
of narrow, well-defined
characteristic
absorption peaks.
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Absorption spectra by
aqueous charge
transfer complexes
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Quantitative Analysis
• The fundamental law on absorption methods are based
on Beer’s law (Beer-Lambert law).
• 2 types of methods:
1.Calibration curve method
2.Standard addition method
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N=5
N – is the number of points used
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Transmittance vs Absorbance
• The transmittance
spectra provide
better contrast
between intensities
of strong and weak
bands compared to
absorbance spectra
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Electromagnetic Spectrum
• Energy of IR photon insufficient to cause electronic excitation but can cause vibrational excitation
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Vibrations
Anharmonic Oscillator
•Bond – not a perfect
Elastic nature
•Does not obey exactly
simple harmonic motion
•Dissociates
•Not a ideal parabola
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visible
1.Near IR region (Nearest to the visible)
780 nm to 2.5 μm (12,800 to 4000 cm-1) N
E
A
R
2. Mid IR region
M
2.5 to 50 μm (4000 – 200 cm-1)
infrared
I
D
F
3. Far IR region A
R
50 to 1000 μm (200 – 10cm-1)
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microwave
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Dipole moment
is a measure of the extent to which a separation exists
between the centers of positive and negative charge
within a molecule
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Molecular vibration
divided into
back & forth involves change in
movement bond angles
stretching bending
wagging
scissoring
Stretching
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Bending
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Preparation of Samples
1. Liquids:
- A drop of the pure (neat) liquid is squeezed between
two salt plates (eg: KBr, NaCl) to give a layer that has
thickness 0.01mm or less
- Neat liquid is a pure liquid that do not contain any
solvent or water
- This method is applied when the amount of liquid is
small or when a suitable solvent is unavailable
- A spectrum determined by this method is called “neat
spectrum”
- Organic compounds analysed by this method must be
free of water
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2. Solids:
There are 3 common methods for preparing solid samples:
i) KBr pallet:
- The finely ground solid sample is mixed KBr. The mixture
is pressed under high pressure (10,000 – 15,000 psi) in
special die to form a pellet
- Disadvantage: KBr absorbs water, thus interferes the
spectrum obtained
ii) Nujol mull:
- Involves grinding the compound with mineral oil (Nujol) to
create a suspension of finely round sample in mineral oil
and then put in between salt plates
- Disadvantage: The mineral oil obscures band that may be
present in the analyzed compound
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Interpretation of IR Spectra
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• Steps:
1. Identify functional groups (group frequency region).
Refer to IR chart
2. Compare with standard spectra containing these
functional groups (fingerprint region)
• Fingerprint region (usually 1500-500 cm-1) contains
complicated series of absorptions due to all manner
bending vibrations within the molecule
- use in comparing compounds that contain similar bond
(eg: 1-propanol & 2-propanol)
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p/s:
Alkane
CH Stretch for sp3 C-H around 3000 – 2840 cm-1.
CH2 Methylene groups have a characteristic bending absorption
at approximate 1465 cm-1
CH3 Methyl groups have a characteristic bending absorption at
approximate 1375 cm-1
CH2 The bending (rocking) motion associated with four or more
CH2 groups in an open chain occurs at about 720 cm-1
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Example: decane
Peak Assignment
2800 cm-1 sp3 C-H stretching
1460 cm-1 CH2 bending
1380 cm-1 CH3 bending
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Alkenes
=C-H Stretch for sp2 C-H occurs at values greater than 3000 cm-1.
=C-H out-of-plane (oop) bending occurs in the range 1000 –
650 cm-1
C=C stretch occurs at 1660 – 1600 cm-1;
often conjugation moves C=C stretch to lower frequencies
and increases the intensity.
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Example: cyclohexene
Alkynes
CH Stretch for sp C - H occurs near 3300 cm-1.
Example: 1-octyne
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Aromatic Rings
C H Stretch for sp2 C-H occurs at values greater than 3000 cm-1.
Example: toluene
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1. Monosubstituted rings
this substitution pattern always gives a strong absorption
near 690 cm-1. If this band is absent, no monosubstituted
ring is present. A second strong band usually appears near
750 cm-1
2. Ortho-Disubstituted rings
one strong band near 750 cm-1
C H gives one absorption band near 690 cm-1 plus one near 780
cm . A third band of medium intensity is often found near 880
-1
cm-1.
Alcohol
O-H The hydrogen-bonded O-H band is a broad peak at 3400 – 3300
cm-1. Free O-H stretch is a sharp peak at 3650-3600 cm-1
C-O-H Bending appears as a broad and weak peak at 1440 – 1220 cm-1
often obscured by the CH3 bendings
C-O Stretching vibration usually occurs in the range 1260 – 1000 cm-1.
This band can be used to assign a primary, secondary or tertiary
structure to an alcohol.
Example: 1-hexanol
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increase
decrease
3° Alcohols (saturated) 1150 3620
2° Alcohols (saturated) 1100 3630
1° Alcohols (saturated) 1050 3640
Ether
C-O -The most prominent band is that due to C-O stretch,
1300 – 1000 cm-1.
-Absence of C=O and O-H is required to ensure that C-O stretch
is not due to an ester or an alcohol.
-Phenyl alkyl ethers give two strong bands at about
1250 – 1040 cm-1,
while aliphatic ethers give one strong band at about 1120 cm-1.
Carbonyl Compound
Normal base values for the C=O stretching vibrations for carbonyl
groups:
cm-1
Aldehyde
R C H
C=O stretch appear in range 1740-1725 cm-1 for
O normal aliphatic aldehydes
Ar C H Conjugation of C=O with phenyl; 1700 – 1660 cm-1 for
O C=O and 1600 – 1450 cm-1 for ring (C=C)
C-H Stretch, aldehyde hydrogen (-CHO), consists of weak
bands, one at 2860 - 2800 cm-1 and the other at 2760
- 2700 cm-1.
EXAMPLE:
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Ketone
R C R' C=O stretch appear in range 1720-1708 cm-1 for
O normal aliphatic ketones
Ar C R'
Conjugation of C=O with phenyl at 1700 – 1680 cm-1 for
O C=O and 1600 – 1450 cm-1 for ring (C=C)
Example: methone
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Carboxylic Acid
O-H Stretch, usually very broad (strong H-bonded, occurs at
3400-2400 cm-1 and often overlaps the C-H absorptions
C=O Stretch, broad, occurs at 1730-1700 cm-1 . Conjugation
moves the absorption to a lower frequency
C-O Stretch occurs in the range 1320-1210 cm-1 , medium
intensity
Example: pentanoic acid
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Ester
R C O R C=O stretch appear in range 1750-1735 cm-1 for normal
O aliphatic esters
Ar C O R
Conjugation of C=O with phenyl; 1740 – 1715 cm-1 for C=O
O and 1600 – 1450 cm-1 for ring (C=C)
Amide
O O O
H H R
R C N R C N R C N
10
H R R
20
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Example: propionamide
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Acid Chloride
Stretch appear in range 1810 -1775 cm-1 in
C O
conjugated chlorides. Conjugation lowers the
frequency to 1780 – 1760 cm-1
C Cl
Stretch occurs in the range 730 -550 cm-1
Acid chloride show a very strong band for the C=O group.
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Anhydride
C O Stretch always has two bands, 1830 -1800 cm-1 and 1775 –
1740 cm-1, with variable relative intensity.
Conjugation moves the absorption to a lower frequency.
Ring strain (cyclic anhydride) moves absorptions to a
higher frequency.
C O Stretch (multiple bands) occurs in the range 1300 -900 cm-1
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Amine
Stretching occurs in the range 3500 – 3300 cm-1.
N–H
Primary amines have two bands.
Secondary amines have one band, a vanishingly weak
one for aliphatic compounds and a stronger one for
aromatic secondary amines.
Tertiary amines have no N – H stretch.
Example: 1-butanamine