a summary about the intermediate filaments
REFERENCE//
MOLECULAR CELL BIOLOGY (5TH EDITION) –LODISH – BERK – MATISUDAIRA – KAISER – KRIEGER – SCOTT – ZIPURSKY – DARNELL
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intermediate filaments summary- lodish
1. IFs Summary
(LODISH BK. M.B)
The association of intermediate filaments with the nuclear and
plasma membranes suggests that their principal function is
structural.
In epithelium, for instance, intermediate filaments provide
mechanical support for the plasma membrane where it comes into
contact with other cells or with the extracellular matrix.
In epidermal cells (outer layer of skin) and the axons of neurons,
intermediate filaments are at least 10 times as abundant as
microfilaments or microtubules, the other components of the
cytoskeleton.
Intermediate filaments are extremely stable.
– stay intact in high salt solutions and strong detergents, while other
types of filaments will deform. In fact, most IF purification methods
employ these treatments to free intermediate filaments from other
proteins. –
10 nm diameter.
IF subunits are α-helical rods that assemble into ropelike filaments.
2. IF subunits do not bind nucleotides and their assembly into
intermediate filaments does not involve the hydrolysis of ATP or
GTP, as does the polymerization of G-actin and tubulin.
IFs are found in the cytoplasm of different tissues and at the nuclear
membrane.
Unlike microfilaments and microtubules, however, intermediate
filaments do not contribute to cell motility.
The most ubiquitous group of IFs are the lamins. Lamins are found
exclusively in the nucleus. Of the three nuclear lamins, two are
alternatively spliced products encoded by a common gene, whereas
the third is encoded by a separate gene.
Epithelial cells express acidic and basic keratins.
They associate in a 1:1 ratio to form heterodimers, which assemble into
heteropolymeric keratin filaments; neither type alone can assemble
into a keratin filament.
The keratins are the most diverse classes of IF proteins, with a large
number of keratin isoforms being expressed.
These isoforms can be divided into two groups: about 10 keratins are
specific for “hard” epithelial tissues, which give rise to nails, hair, and
wool; and about 20, called cytokeratins are more generally found in
the epithelia that line internal body cavities.
Each type of epithelium always expresses a characteristic combination
of acidic and basic keratins.
3. Four proteins are classified as type III IF proteins. Unlike the keratins,
the type III proteins can form both homo- and heteropolymeric IF
filaments.
The most widely distributed of all IF proteins is vimentin, which is
typically expressed in leukocytes, blood vessel endothelial cells, some
epithelial cells, and mesenchymal cells such as fibroblasts.
Vimentin filaments help support cellular membranes.
Vimentin networks may also help keep the nucleus and other organelles
in a defined place within the cell.
Vimentin is frequently associated with microtubules and the network of
vimentin filaments parallels the microtubule network.
The other type III IF proteins is Desmin –limitedly distributed–Desmin
filaments in muscle cells are responsible for stabilizing sarcomeres in
contracting muscle.
Glial fibrillary acidic protein forms filaments in the glial cells that
surround neurons and in astrocytes.
Peripherin is found in neurons of the peripheral nervous system, but
little is known about it.
The core of neuronal axons is filled with neurofilaments (NFs), each
a heteropolymer composed of three polypeptides—
NF-L, NF-M, and NF-H—which differ greatly in molecular weight.
4. Neurofilaments are responsible for the radial growth of an axon and
thus determine axonal diameter, which is directly related to the
speed at which it conducts impulses.
The influence of the number of neurofilaments on impulse
conduction is highlighted by a mutation in quails named quiver,
which blocks the assembly of neurofilaments. As a result, the
velocity of nerve conduction is severely reduced. Also present in
axons are microtubules, which direct axonal elongation.
With the use of fluorescence-tagged antibodies specific for those IF
proteins, it is easy to determine the origin of tumors.
For example, the most common malignant tumors of the breast and
gastrointestinal tract contain keratins and lack vimentin; thus they are
derived from epithelial cells (which contain keratins but not vimentin).
All IF subunit proteins have a common domain structure: a central
α-helical core flanked by globular N- and C-terminal domains.
The core helical domain, which is conserved among all IF proteins,
consists of four long α-helices separated by three nonhelical,
“spacer” regions. The α-helical segments pair to form a coiled-coil
dimer.
An IF-protein dimer appears as a rodlike molecule with globular
domains at the ends; two dimers associate laterally into a tetramer.
The results of labeling experiments with antibodies to the N- or C-
terminal domain indicate that the polypeptide chains are parallel in
5. a dimer, whereas the dimers in a tetramer have an antiparallel
(staggered) orientation.
The next steps in assembly include the end-to-end association of
tetramers to form long protofilaments, which aggregate laterally
into a loose bundle of protofibrils. Compaction of a protofibril yields
a mature 10-nm-diameter filament with the N- and C-terminal
globular domains of the tetramers.
In a mature filament, consisting of four protofibrils, the globular
domains form beaded clusters on the surface.
Interestingly, because the tetramer is symmetric, an intermediate
filament may not have a polarity as does an actin filament or a
microtubule.
This idea is supported by findings from experiments showing that
vimentin subunits can incorporate along the length, as well as the ends,
of a filament.
Although the α-helical core is common to all IF proteins, the N- and
C-terminal domains of different types of IF proteins vary greatly in
molecular weight and sequence.
Partly because of this lack of sequence conservation, scientists
initially speculated that the N- and C-terminal domains do not have
roles in IF assembly.
6. The results of several subsequent experiments, however, proved this
hypothesis to be partly incorrect. For instance, if the N-terminal domain
of an IF protein is shortened, either by proteolysis or by deletion
mutagenesis, the truncated protein cannot assemble into filaments.
(Keratins are an exception; they form filaments even if both terminal
domains are absent.)
Even though the C-terminal domain is dispensable for IF assembly, it
seems to affect the organization of IF cytoskeletons in a cell.
Thus these domains may control lateral interactions within an
intermediate filament, as well as interactions between intermediate
filaments and other cellular components.
The true monomer of the IFs is still unknown.
The main supporting evidence for the involvement of the IF tetramer
comes from cell fractionation experiments showing that, although most
vimentin in cultured fibroblasts is polymerized into filaments, 1–5
percent of the protein exists as a soluble pool of tetramers. The
presence of a tetramer pool suggests that vimentin monomers are
rapidly converted into dimers, which rapidly form tetramers.
Some IF proteins form homopolymeric filaments; others form only
heteropolymeric filaments with other proteins in their class; and
some can form both homo- and heteropolymeric filaments.
Some IF proteins, but not the keratins, can form heteropolymers with IF
proteins in another class. NF-L self-associates to form a homopolymer,
but NF-H and NF-M commonly co-assemble with the NF-L backbone,
and so most neurofilaments contain all three proteins.
Spacer sequences in the coiled-coil regions of IF dimers or sequences in
the diverse N- or C-terminal domains or both are most likely
responsible for determining whether particular IF proteins assemble
into heteropolymers or homopolymers.
7. In fact, mutations in these regions generate mutated IF polypeptides
that can form hetero-oligomers with normal IF proteins. These hybrid
molecules often “poison” IF polymerization by blocking assembly at an
intermediate stage.
IF proteins have been shown to exchange with the existing IF
cytoskeleton.
In one experiment, a biotin-labeled type I keratin was injected into
fibroblasts; within 2 hours after injection, the labeled protein had been
incorporated into the already existing keratin cytoskeleton.
The results of this experiment and others demonstrate that IF subunits
in a soluble pool are able to add themselves to preexisting filaments
and that subunits are able to dissociate from intact filaments.
The relative stability of intermediate filaments presents special
problems in mitotic cells, which must reorganize all three
cytoskeletal networks in the course of the cell cycle.
In particular, breakdown of the nuclear envelope early in mitosis
depends on the disassembly of the lamin filaments that form a
meshwork supporting the membrane.
The phosphorylation of nuclear lamins by Cdc2, a cyclin-dependent
kinase that becomes active early in mitosis (prophase), induces the
disassembly of intact filaments and prevents their reassembly.
Later in mitosis (telophase), removal of these phosphates by specific
phosphatases promotes lamin reassembly, which is critical to re-
formation of a nuclear envelope around the daughter chromosomes.
8. The opposing actions of kinases and phosphatases thus provide a rapid
mechanism for controlling the assembly state of lamin intermediate
filaments. Other intermediate filaments undergo similar disassembly
and reassembly in the cell cycle.
Intermediate filament–associated proteins (IFAPs) cross-link
intermediate filaments with one another, forming a bundle or a
network, and with other cell structures, including the plasma
membrane.
IFAPs appear to play a role in organizing the IF cytoskeleton, integrating
the IF cytoskeleton with both the microfilament and the microtubule
cytoskeletons, and attaching the IF cytoskeleton to the nuclear membrane
and plasma membrane, especially at cell junctions.
A physical linkage between intermediate filaments and microtubules
can be detected with certain drugs.
Treatment of cells with high concentrations of colchicine causes the
complete dissolution of microtubules after a period of several hours.
Although vimentin filaments in colchicine-treated cells remain intact, they
clump into disorganized bundles near the nucleus.
This finding demonstrates that the organization of vimentin filaments is
dependent on intact microtubules and suggests the presence of proteins
linking the two types of filaments.
In other studies, IFs have been shown to be cross-linked to actin
filaments.
One family of IFAPs, the plakins, is responsible for linking IFs with
both microtubules and microfilaments.
9. One plakin family member is plectin, a 500,000-MW protein that has been
shown to cross-link intermediate filaments with microtubules and actin
filaments in vitro.
Plectin also interacts with other cytoskeletal proteins, including spectrin,
microtubule- associated proteins, and lamin B.
Immunoelectron microscopy reveals gold-labeled antibodies to plectin
decorating short, thin connections between microtubules and vimentin,
indicating the presence of plectin in these cross-links.
The N-terminus of plectin and other plakins contains a calponin-homology
(CH) domain similar to that in fimbrin and other actin cross-linking proteins.
This finding suggests that some plakins form cross-links between actin
microfilaments and intermediate filaments.
Cross-links between microtubules and neurofilaments are seen in
micrographs of nerve-cell axons.
Although the identity of these connections in axons is unknown, they
may be IFAPs whose function is to cross-link neurofilaments and
microtubules into a stable cytoskeleton.
Alternatively, these connections to microtubules may be the long arms
of NF-H, which is known to bind microtubules.
A network of intermediate filaments is often found as a laminating
layer adjacent to a cellular membrane, where it provides mechanical
support.
The best example is the nuclear lamina along the inner surface of the
nuclear membrane.
10. This supporting network is composed of lamin A and lamin C filaments
cross-linked into an orthogonal lattice, which is attached by lamin B to
the inner nuclear membrane through interactions with a lamin B
receptor, an IFAP, in the membrane.
Like the membrane skeleton of the plasma membrane, the lamin
nuclear skeleton not only supports the inner nuclear membrane but
also provides sites where nuclear pores and interphase chromosomes
attach. Thus, the nuclear lamins organize the nuclear contents from the
outside in.
In addition to forming the nuclear lamina, intermediate filaments
are typically organized in the cytosol as an extended system that
stretches from the nuclear envelope to the plasma membrane.
Some intermediate filaments run parallel to the cell surface,
whereas others traverse the cytosol; together they form an internal
framework that helps support the shape and resilience of the cell.
The results of in vitro binding experiments suggest that, at the
plasma membrane, vimentin filaments bind two proteins: ankyrin,
the actin-binding protein associated with the Na+/K+ ATPase in
nonerythroid cells, and plectin, which also binds to α6-β4 integrin in
certain cell junctions. Through these two IFAPs, the vimentin
cytoskeleton is attached to the plasma membrane, providing a
flexible structural support.
In muscle, a lattice composed of a band of desmin filaments
surrounds the sarcomere.
11. The desmin filaments encircle the Z disk and are cross-linked to the plasma
membrane by several IFAPs, including paranemin and ankyrin.
Longitudinal desmin filaments cross to neighboring Z disks within the
myofibril, and connections between desmin filaments around Z disks in
adjacent myofibrils serve to cross-link myofibrils into bundles within a muscle
cell.
The lattice is also attached to the sarcomere through interactions with
myosin thick filaments.
Because the desmin filaments lie outside the sarcomere, they do not actively
participate in generating contractile forces.
Rather, desmin plays an essential structural role in maintaining muscle
integrity.
In transgenic mice lacking desmin, for example, this supporting architecture
is disrupted and muscles are misaligned.
The alignment of desmin filaments with the muscle sarcomere is held in
place at the Z disk by a collar of desmin/synemin heteropolymers.
The keratin filaments in one cell are indirectly connected to those in
a neighboring cell by desmosomes or to the extracellular matrix by
hemidesmosomes.
As a result of these connections, shearing forces are distributed from one
region of a cell layer to the entire sheet of epithelial cells, providing
strength and rigidity to the entire epithelium.
Actin microfilaments, which are attached to a third type of cell junction in
epithelial cells, intermediate filaments form a flexible but resilient
framework that gives structural support to an epithelium.
12. The epidermis is a tough outer layer of tissue, which acts as a water-
tight barrier to prevent desiccation and serves as a protection
against abrasion.
In epidermal cells, bundles of keratin filaments are cross-linked by
filaggrin, an IFAP, and are anchored at their ends to desmosomes.
As epidermal cells differentiate, the cells condense and die, but the
keratin filaments remain intact, forming the structural core of the dead,
keratinized layer of skin.
The structural integrity of keratin is essential in order for this layer to
withstand abrasion.
In humans and mice, the K4 and K14 keratin isoforms form
heterodimers that assemble into protofilaments.
A mutant K14 with deletions in either the N- or the C-terminal domain can
form heterodimers in vitro but does not assemble into protofilaments.
The expression of such mutant keratin proteins in cells causes IF networks
to break down into aggregates.
Transgenic mice that express a mutant K14 protein in the basal stem cells
of the epidermis display gross skin abnormalities, primarily blistering of
the epidermis, that resemble the human skin disease epidermolysis
bullosa simplex (EBS).
The general role of keratin filaments appears to be to maintain the
structural integrity of epithelial tissues by mechanically reinforcing
the connections between cells.
13. SUM UP
■ Intermediate filaments are present only in cells that display a
multicellular organization. An essential role of intermediate filaments is to
distribute tensile forces across cells in a tissue.
■ Unlike microtubules and microfilaments, intermediate filaments are
assembled from a large number of different IF proteins. These proteins are
divided into four major types based on their sequences and tissue
distribution. The lamins are expressed in all cells, whereas the other types
are expressed in specific tissues.
■ The assembly of intermediate filaments probably proceeds through
several intermediate structures, which associate by lateral and end-to-end
interactions.
■ Although intermediate filaments are much more stable than
microfilaments and microtubules, they readily exchange subunits from a
soluble pool.
■ The phosphorylation of intermediate filaments early in mitosis leads to
their disassembly; they reassemble late in mitosis after dephosphorylation
of the subunits.
■ The organization of intermediate filaments into networks and bundles,
mediated by various IFAPs, provides structural stability to cells. IFAPs also
cross-link intermediate filaments to the plasma and nuclear membranes,
microtubules, and microfilaments.
■ Major degenerative diseases of skin, muscle, and neurons are caused by
disruption of the IF cytoskeleton or its connections to other cell structures.
REFERENCE// MOLECULAR CELL BIOLOGY (5TH
EDITION) –LODISH –
BERK – MATISUDAIRA – KAISER – KRIEGER – SCOTT – ZIPURSKY –
DARNELL
DONE BY: ALY AHMED BARAKAT - (MD STUDENT AT OMC).