An integrated encyclopedia of DNA elements in the human genome (Q22122150)

ORCID Public Data File 2021

language of work or name

English

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publication date

6 September 2012

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published in

Nature

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volume

489

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issue

7414

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page(s)

57-74

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copyright license

Creative Commons Attribution-NonCommercial-ShareAlike 3.0 Unported

start time

1 September 2012

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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ZNF274 recruits the histone methyltransferase SETDB1 to the 3' ends of ZNF genes

19 March 2017

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Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding

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Complete Khoisan and Bantu genomes from southern Africa

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Human DNA methylomes at base resolution show widespread epigenomic differences

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The insulator binding protein CTCF positions 20 nucleosomes around its binding sites across the human genome

19 March 2017

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Genome-scale DNA methylation maps of pluripotent and differentiated cells

19 March 2017

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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

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SETDB1: a novel KAP-1-associated histone H3, lysine 9-specific methyltransferase that contributes to HP1-mediated silencing of euchromatic genes by KRAB zinc-finger proteins

19 March 2017

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Initial sequencing and comparative analysis of the mouse genome

19 March 2017

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The role of chromatin during transcription

19 March 2017

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Chromatin modifications and their function

19 March 2017

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The transcriptional coactivators p300 and CBP are histone acetyltransferases

19 March 2017

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An expansive human regulatory lexicon encoded in transcription factor footprints

19 March 2017

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Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development

19 March 2017

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Targeted and genome-scale strategies reveal gene-body methylation signatures in human cells

19 March 2017

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19 March 2017

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An oestrogen-receptor-α-bound human chromatin interactome

19 March 2017

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Landscape of transcription in human cells

7 April 2017

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Mapping and analysis of chromatin state dynamics in nine human cell types

7 April 2017

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The ENCODE (ENCyclopedia Of DNA Elements) Project

7 April 2017

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Annotation of functional variation in personal genomes using RegulomeDB

7 April 2017

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The long-range interaction landscape of gene promoters

7 April 2017

1 reference

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Architecture of the human regulatory network derived from ENCODE data

7 April 2017

1 reference

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Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation

7 April 2017

1 reference

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Charting histone modifications and the functional organization of mammalian genomes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

GREAT improves functional interpretation of cis-regulatory regions

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Dynamic regulation of nucleosome positioning in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

RNA maps reveal new RNA classes and a possible function for pervasive transcription

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Distribution and intensity of constraint in mammalian genomic sequence

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Linking disease associations with regulatory information in the human genome

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Ubiquitous heterogeneity and asymmetry of the chromatin environment at regulatory elements

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Understanding transcriptional regulation by integrative analysis of transcription factor binding data.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Functional analysis of transcription factor binding sites in human promoters

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Unsupervised pattern discovery in human chromatin structure through genomic segmentation

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

AlleleSeq: analysis of allele-specific expression and binding in a network framework

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Determinants of nucleosome organization in primary human cells

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

9p21 DNA variants associated with coronary artery disease impair interferon-γ signalling response

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Discovery and annotation of functional chromatin signatures in the human genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Predictive chromatin signatures in the mammalian genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

My5C: web tools for chromosome conformation capture studies

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Local DNA topography correlates with functional noncoding regions of the human genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Gene regulation in the third dimension

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Divergence of transcription factor binding sites across related yeast species

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Raising the estimate of functional human sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Widely distributed noncoding purifying selection in the human genome

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Mammalian RNA polymerase II core promoters: insights from genome-wide studies

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Chromatin remodeling as a guide to transcriptional regulatory networks in mammals

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Statistical distributions of nucleosomes: nonrandom locations by a stochastic mechanism

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Nuclease hypersensitive sites in chromatin

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Reciprocal intronic and exonic histone modification regions in humans.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

Tissue-specific transcriptional regulation has diverged significantly between human and mouse

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

The share of human genomic DNA under selection estimated from human-mouse genomic alignments.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3439153

The GENCODE pseudogene resource

29 November 2018

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Crossref

https://api.crossref.org/works/10.1038%2FNATURE11247

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7 January 2021

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Personal and population genomics of human regulatory variation

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Crossref

https://api.crossref.org/works/10.1038%2FNATURE11247

inferred from DOI database lookup

7 January 2021

based on heuristic

Measuring reproducibility of high-throughput experiments

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COCI

https://opencitations.net/index/coci/api/v1/references/10.1038/NATURE11247

15 July 2023

Identifiers

DOI

10.1038/NATURE11247

1 reference

Dimensions Publication ID

1029065430

0 references

1 reference

1 reference

PubMed publication ID

22955616

1 reference