Sequencing and comparison of yeast species to identify genes and regulatory elements (Q22122502)

Europe PubMed Central

PubMed publication ID

12748633

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12748633

2 January 2024

5

Eric S. Lander

Eric S.

Lander

1 reference

11 September 2022

1

Manolis Kellis

Manolis

Kellis

1 reference

11 September 2022

4

Bruce Birren

Bruce

Birren

1 reference

11 September 2022

2

Nick Patterson

Nick

Patterson

1 reference

11 September 2022

Matthew Endrizzi

3

Matthew

Endrizzi

1 reference

1010517605

11 September 2022

Eric S. Lander

series ordinal

5

1 reference

Europe PubMed Central

PubMed publication ID

12748633

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A12748633

full work available at URL

2 January 2024

language of work or name

English

0 references

publication date

15 May 2003

0 references

http://www.nature.com/articles/nature01644.pdf

file format

Portable Document Format

1 reference

http://www.nature.com/articles/nature01644

2 January 2024

1 reference

http://www.nature.com/doifinder/10.1038/nature01644

2 January 2024

1 reference

2 January 2024

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423

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issue

6937

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page(s)

241-254

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1 reference

Initial sequencing and comparative analysis of the mouse genome

20 April 2017

1 reference

Systematic determination of genetic network architecture

20 April 2017

1 reference

DNA binding sites: representation and discovery

20 April 2017

1 reference

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

20 April 2017

1 reference

Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori

20 April 2017

1 reference

Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii

20 April 2017

1 reference

ARACHNE: a whole-genome shotgun assembler

20 April 2017

1 reference

Genome sequence of the human malaria parasite Plasmodium falciparum

20 April 2017

1 reference

Discovery of regulatory elements by a computational method for phylogenetic footprinting

20 April 2017

1 reference

Initial sequencing and analysis of the human genome

20 April 2017

1 reference

The Ka/Ks ratio: diagnosing the form of sequence evolution

20 April 2017

1 reference

The transcriptional program of sporulation in budding yeast

20 April 2017

1 reference

A yeast prion provides a mechanism for genetic variation and phenotypic diversity

20 April 2017

1 reference

Saccharomyces Genome Database (SGD) provides secondary gene annotation using the Gene Ontology (GO)

20 April 2017

1 reference

Transcriptional regulatory networks in Saccharomyces cerevisiae

20 April 2017

1 reference

Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering

20 April 2017

1 reference

Molecular evidence for an ancient duplication of the entire yeast genome

20 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Total number of coding open reading frames in the yeast genome.

20 April 2017

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

A question of size: the eukaryotic proteome and the problems in defining it.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Characterization of the yeast transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Genomic exploration of the hemiascomycetous yeasts: 4. The genome of Saccharomyces cerevisiae revisited.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

A re-annotation of the Saccharomyces cerevisiae genome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Genomic strategies to identify mammalian regulatory sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Large-scale comparative sequence analysis of the human and murine Bruton's tyrosine kinase loci reveals conserved regulatory domains

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Surveying Saccharomyces genomes to identify functional elements by comparative DNA sequence analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Comparative genomics identifies the genetic islands that distinguish Neisseria meningitidis, the agent of cerebrospinal meningitis, from other Neisseria species

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

High-throughput gene mapping in Caenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Evolution of gene order in the genomes of two related yeast species

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Genomic exploration of the hemiascomycetous yeasts: 5. Saccharomyces bayanus var. uvarum

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Complete DNA sequence of yeast chromosome XI.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Genomewide analysis of mRNA processing in yeast using splicing-specific microarrays

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Adaptation for horizontal transfer in a homing endonuclease

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Mating-type gene switching in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Distribution patterns of over-represented k-mers in non-coding yeast DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Prediction of transcription regulatory sites in Archaea by a comparative genomic approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Separation of DNA binding from the transcription-activating function of a eukaryotic regulatory protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

SCPD: a promoter database of the yeast Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

MIPS: a database for genomes and protein sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Glucose-mediated phosphorylation converts the transcription factor Rgt1 from a repressor to an activator

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

The pachytene checkpoint in Saccharomyces cerevisiae requires the Sum1 transcriptional repressor

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Computational identification of cis-acting elements affecting post-transcriptional control of gene expression in Saccharomyces cerevisiae

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Program-specific distribution of a transcription factor dependent on partner transcription factor and MAPK signaling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Activation of the Kss1 invasive-filamentous growth pathway induces Ty1 transcription and retrotransposition in Saccharomyces cerevisiae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644

Chromosomal evolution in Saccharomyces

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FNATURE01644