Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome (Q61970815)

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scientific article published on 21 February 2019

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Language	Label	Description	Also known as
English	Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome	scientific article published on 21 February 2019

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scholarly article

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title

Beyond Pathway Analysis: Identification of Active Subnetworks in Rett Syndrome (English)

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main subject

molecular medicine

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Rett syndrome

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pathway analysis

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author

Ryan Miller

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1

object named as

Ryan A. Miller

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Friederike Ehrhart

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2

object named as

Friederike Ehrhart

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Lars Eijssen

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3

object named as

Lars M. T. Eijssen

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Denise Slenter

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4

object named as

Denise N. Slenter

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Leopold M G Curfs

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5

object named as

Leopold M. G. Curfs

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Chris T. Evelo

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6

object named as

Chris T. Evelo

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Egon Willighagen

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object named as

Egon L. Willighagen

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Martina Summer-Kutmon

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8

object named as

Martina Kutmon

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language of work or name

English

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publication date

21 February 2019

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published in

Frontiers in Genetics

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volume

10

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page(s)

59

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copyright license

Creative Commons Attribution 4.0 International

start time

21 February 2019

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April 2022 Public Data File from Crossref

copyright status

copyrighted

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describes a project that uses

Cytoscape

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Cytoscape

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Europe PubMed Central

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9 June 2022

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https://europepmc.org/search?query=(METHODS:'Cytoscape')

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

limma

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limma

2 references

stated in

Europe PubMed Central

retrieved

22 June 2022

reference URL

https://europepmc.org/article/PMC/6393361

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inferred from PubMed Central ID database lookup

stated in

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2

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12 December 2020

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Cytoscape: a software environment for integrated models of biomolecular interaction networks

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PubMed

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12 December 2020

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A patient with classic Rett syndrome with a novel mutation in MECP2 exon 1

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PubMed

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FXYD1 is an MeCP2 target gene overexpressed in the brains of Rett syndrome patients and Mecp2-null mice

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PubMed

reference URL

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12 December 2020

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MeCP2, a key contributor to neurological disease, activates and represses transcription

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

based on heuristic

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The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

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Rett syndrome: Revised diagnostic criteria and nomenclature

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PubMed

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12 December 2020

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Ten years of pathway analysis: current approaches and outstanding challenges

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PubMed

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12 December 2020

based on heuristic

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GO-Elite: a flexible solution for pathway and ontology over-representation

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

based on heuristic

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User-friendly solutions for microarray quality control and pre-processing on ArrayAnalysis.org

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

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Rett syndrome and the urge of novel approaches to study MeCP2 functions and mechanisms of action.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

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inferred from PubMed ID database lookup

WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

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limma powers differential expression analyses for RNA-sequencing and microarray studies

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PathVisio 3: an extendable pathway analysis toolbox

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Emerging and Novel Functions of Complement Protein C1q

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

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inferred from PubMed ID database lookup

cyNeo4j: connecting Neo4j and Cytoscape

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ChEBI in 2016: Improved services and an expanding collection of metabolites

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

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Rett syndrome: An autoimmune disease?

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptome analysis of human brain tissue identifies reduced expression of complement complex C1Q Genes in Rett syndrome.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rett syndrome - biological pathways leading from MECP2 to disorder phenotypes

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

HMDB 4.0: the human metabolome database for 2018.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Reactome Pathway Knowledgebase.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ensembl 2018.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptome level analysis in Rett syndrome using human samples from different tissues.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30847002

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12 December 2020

based on heuristic

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COCI

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retrieved

30 October 2021

Integrated analysis of human transcriptome data for Rett syndrome finds a network of involved genes

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COCI

reference URL

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retrieved

30 October 2021

BridgeDbR

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COCI

retrieved

25 October 2022

reference URL

https://opencitations.net/index/coci/api/v1/references/10.3389/FGENE.2019.00059

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https://opencitations.net/index/api/v1/references/10.3389/FGENE.2019.00059

Tissue-resident memory CD8+ T cells shape local and systemic secondary T cell responses

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5 May 2024

reference URL

https://opencitations.net/index/api/v1/references/10.3389/FGENE.2019.00059

Identifiers

DOI

10.3389/FGENE.2019.00059

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PMC publication ID

6393361

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PubMed publication ID

30847002

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