Peter Funch
Aarhus University, Bioscience, Faculty Member
- Palaeontology, Zoology, Evolutionary Biology, Paleobiology, Systematics (Taxonomy), Paleontology, and 17 morePhylogenetics, Phylogenetic studies, Symbiosis, Ecology, Morphology, Biogeography, Phylogeny/phylogenetics, Bioscience, Meiofauna, Eurypterid, Biosciences, Xiphosura, Botany, Gnathifera, Morphological evolution, Macroevolution, and Palaeobiologyedit
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Studies of geographic variation in anhydrobiotic tolerance may increase our understanding of the population dynamics of terrestrial meiofauna and the relative importance of local adaptation and microhabitat niche separation. Although... more
Studies of geographic variation in anhydrobiotic tolerance may increase our understanding of the population dynamics of terrestrial meiofauna and the relative importance of local adaptation and microhabitat niche separation. Although anhydrobiosis in tardigrades has been studied extensively, few studies have dealt with intraspecific variation in survival and none of these included genetic data to validate the intraspecific nature of the comparisons. Such data are necessary when working with meiofauna as cryptic species are common. We analysed the anhydrobiotic survival and genetic variation in cytochrome oxidase subunit I of two eutardigrades (Richtersius coronifer and Ramazzottius oberhaeuseri) from Italy and Sweden to detect possible local adaptation. Survival was analysed as a multidimensional contingency table and showed that anhydrobiotic survival was higher in Sweden for Ra. oberhaeuseri whereas no significant geographic variation was found for Ri. coronifer. Our genetic analysis indicated the coexistence of two cryptic species of Ra. oberhaeuseri in Italy, only one of which was found in Sweden. It could not be determined whether the variation in Ramazzottius is intra‐ or interspecific due to the presence of these cryptic species. We suggest that geographic variation in anhydrobiotic survival may be a general phenomenon in tardigrades but further research is necessary to determine the degree of intraspecific variation. The genetic analysis showed indications of long‐term isolation of the individual populations of Ri. coronifer but recent dispersal in one of the cryptic species of Ramazzottius. We found higher survival in Ra. oberhaeuseri than in Ri. coronifer. These results indicate a possible coupling between anhydrobiotic survival and dispersal rate.
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Knowledge of rotifers from Greenland is poor. Those from marine and other saline waters have especially been poorly investigated. The authors have studied meiofauna from different saline localities at Disko Island, West Greenland on... more
Knowledge of rotifers from Greenland is poor. Those from marine and other saline waters have especially been poorly investigated. The authors have studied meiofauna from different saline localities at Disko Island, West Greenland on several occasions from 1990 to 1999. Samples from the intertidal zone, rock pools and a saline, radioactive spring contained 16 rotifer species. Six of these are new to Greenland. The radioactive salt spring has previously been suggested to contain marine relicts dating back to a warmer period ...
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Research Interests: Marine Biology, Zoology, Phylogeography, Biology, Biological Sciences, and 12 morePopulation structure, Environmental Sciences, Population, Genetic Structure, Cytochrome c oxidase, Nova Scotia, Population expansion, Sympatric Speciation, Allopatric Speciation, Sympatry, North American, and Nucleotides
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The mouthparts of the Norway lobster Nephrops are colonized by an acoelomate metazoan, Symbion pandora gen. et sp. nov. Sessile" stages continually produce inner buds replacing feeding structures. They also produce one of... more
The mouthparts of the Norway lobster Nephrops are colonized by an acoelomate metazoan, Symbion pandora gen. et sp. nov. Sessile" stages continually produce inner buds replacing feeding structures. They also produce one of three motile stages:(1) larvae containing new feeding stages,(2) dwarf males, which settle on feeding stages, or (3) females, which settle onto lobster mouthparts, and eventually degenerate, giving rise to dispersive larvae. All motile stages are short-lived, and do not feed. The structure and function of the cilia ...
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Micrognathozoa is the most recently discovered higher metazoan lineage. The sole known species of the group, Limnognathia maerski, was originally reported from running freshwater in Disko Island (Greenland), and has recently been recorded... more
Micrognathozoa is the most recently discovered higher metazoan lineage. The sole known species of the group, Limnognathia maerski, was originally reported from running freshwater in Disko Island (Greenland), and has recently been recorded from the subantarctic region. Because of the presence of a particular type of jaws formed of special cuticularized rods, similar to those of gnathostomulids and rotifers, the three metazoan lineages were considered closely related, and assigned to the clade Gnathifera. A phylogenetic comparison of four molecular loci for Limnognathia maerski and other newly generated sequences of mainly acoelomate animals showed that Micrognathozoa may constitute an independent lineage from those of Gnathostomulida and Rotifera. However, the exact position of Micrognathozoa could not be determined due to the lack of support for any given relationships and due to the lack of stability in the position of Limnognathia maerski under analysis of different loci and of different parameter sets for sequence comparison. Nuclear loci tend to place Micrognathozoa with the syndermatan/cycliophoran taxa, but the addition of the mitochondrial gene cytochrome c oxidase subunit I favors a relationship of Micrognathozoa to Entoprocta.
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Filter feeding in mussels is a secondary adaptation where the gills have become W‐shaped and greatly enlarged, acting as the mussel filter–pump. Water pumping and particle capture in the blue mussel, Mytilus edulis, have been studied over... more
Filter feeding in mussels is a secondary adaptation where the gills have become W‐shaped and greatly enlarged, acting as the mussel filter–pump. Water pumping and particle capture in the blue mussel, Mytilus edulis, have been studied over many years. Here, we give a short status of the present understanding of ciliary structure and function of the mussel filter–pump, supplemented with new photo‐microscope and scanning electron microscopy (SEM) pictures of gill preparations. Pumping rate (filtration) and pressure to maintain flow have been extensively studied so the power delivered by the mussel pump to the water flow is known (1.1% of total respiratory power), but the actual cost based on gill respiration is much higher (19%), implying that the cost of maintaining of the large gill pump is considerable and that only relatively little energy can be saved by stopping or reducing the activity of the water‐pumping cilia so that continuous feeding with a ‘minimal scaled’ pump is cheaper than discontinuous feeding with a correspondingly larger pump. According to the present view, the pump proper is the beating lateral cilia (lc) on the gill filaments and particle capture is accomplished by the action of laterofrontal cirri (lfc) transferring particles from the main water current to the frontal gill filament currents driven by frontal cilia (fc). Unexplained aspects include retention efficiency according to particle size and the role of pro‐laterofrontal cilia (p‐lfc) placed between the lfc and fc. The structure of cilia and the mode of ciliary beating have been re‐examined in this study by new high‐resolution light and scanning electron microscopy of isolated gill preparations exposed to serotonin (5‐HT) stimulation which can activate the lc and lfc at low concentrations (10−6 M), but removes the lfc from the interfilament canals at higher concentrations (10−5 M).
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Research Interests: Phylogeography, Invertebrates, Biology, Ecology, Medicine, and 15 moreGenetic Diversity, Molecular Ecology, Biological Sciences, Mediterranean Sea, Phylogeny, North Atlantic, Haplotypes, Atlantic Ocean, Animals, Genetic variation, Host Specificity, Base Sequence, Likelihood Functions, Gammarus, and Molecular Sequence Data
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Methods Studies on geographic variation in all marine eukaryotes smaller than 1 mm and all marine copepods were compiled from the literature and incorporated in multiple binomial regressions to analyse the effect of body size, lifestyle,... more
Methods Studies on geographic variation in all marine eukaryotes smaller than 1 mm and all marine copepods were compiled from the literature and incorporated in multiple binomial regressions to analyse the effect of body size, lifestyle, environmental isolation and taxonomic affinity on the probability of different regions being reciprocally monophyletic. Sample size was also analysed, because a negative relationship between sample size and probability of being reciprocally monophyletic would indicate biases due to undersampling in the original studies. ...
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Sponges (phylum Porifera) are metazoans which lack muscles and nerve cells, yet perform coordinated behaviours such as whole-body contractions. Previous studies indicate diurnal variability in both the number of contractions and the... more
Sponges (phylum Porifera) are metazoans which lack muscles and nerve cells, yet perform coordinated behaviours such as whole-body contractions. Previous studies indicate diurnal variability in both the number of contractions and the expression of circadian clock genes. Here, we show that diurnal patterns are present in the contraction–expansion behaviour of the demosponge Tethya wilhelma, by using infrared videography and a simulated night/day cycle including sunrise and sunset mimics. In addition, we show that this behaviour is at least strongly influenced by ambient light intensity and therefore indicates light-sensing capabilities in this sponge species. This is supported by our finding that T. wilhelma consistently contracts at sunrise, and that this pattern disappears both when the sponge is kept in constant darkness and when it is in constant light.
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Choanoflagellates are common members of planktonic communities. Some have complex life histories that involve transitions between multiple cell stages. We have grown the loricate choanoflagellate Diaphanoeca grandis on the bacterium... more
Choanoflagellates are common members of planktonic communities. Some have complex life histories that involve transitions between multiple cell stages. We have grown the loricate choanoflagellate Diaphanoeca grandis on the bacterium Pantoea sp. and integrated kinetic observations at the culture level and at the single cell level. The life history of D. grandis includes a cell division cycle with a number of recognisable cell stages. Mature, loricate D. grandis were immobile and settled on the bottom substratum. Daughter cells were ejected from the lorica 30 min. after cell division, became motile and glided on the bottom substratum until they assembled a lorica. Single cell kinetics could explain overall growth kinetics in D. grandis cultures. The specific growth rate was 0.72 day−1 during exponential growth while mature D. grandis produced daughter cells at a rate of 0.9 day−1. Daughter cells took about 1.2 h to mature. D. grandis was able to abandon and replace its lorica, an even...
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A Compilation of Radiocarbon Dates from Disko Bugt, Central West Greenland/Meteorological Observations in 1996 at the Arctic Station, Qeqertarsuaq (Godhavn), Central West Greenland/A Discussion on Pingos in Mellemfjord, Disko, Central West Greenland/Open System Pingos in Mellemfjord, Disko, Centr...more
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The phylum Rotifera consists of minuscule, nonsegmented animals with a unique body plan and an unresolved phylogenetic position. The presence of pharyngeal articulated jaws supports an inclusion in Gnathifera nested in the Spiralia.... more
The phylum Rotifera consists of minuscule, nonsegmented animals with a unique body plan and an unresolved phylogenetic position. The presence of pharyngeal articulated jaws supports an inclusion in Gnathifera nested in the Spiralia. Comparison of Hox genes, involved in animal body plan patterning, can be used to infer phylogenetic relationships. Here, we report the expression of five Hox genes during embryogenesis of the rotifer Brachionus manjavacas and show how these genes define different functional components of the nervous system and not the usual bilaterian staggered expression along the anteroposterior axis. Sequence analysis revealed that the lox5-parapeptide, a key signature in lophotrochozoan and platyhelminthean Hox6/lox5 genes, is absent and replaced by different signatures in Rotifera and Chaetognatha, and that the MedPost gene, until now unique to Chaetognatha, is also present in rotifers. Collectively, our results support an inclusion of chaetognaths in gnathiferans a...
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Demosponges of the genus Halichondria Fleming (1828) are common in coastal marine ecosystems worldwide and have been well-studied over the last decades. As ecologically important filter feeders, Halichondria species represent potentially... more
Demosponges of the genus Halichondria Fleming (1828) are common in coastal marine ecosystems worldwide and have been well-studied over the last decades. As ecologically important filter feeders, Halichondria species represent potentially suitable model organisms to link and fill in existing knowledge gaps in sponge biology, providing important novel insights into the physiology and evolution of the sponge holobiont. Here we review studies on the morphology, taxonomy, geographic distribution, associated fauna, life history, hydrodynamic characteristics, and coordinated behavior of Halichondria species.
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Sponges (phylum Porifera) are metazoans without muscles and nervous system. Still, they perform coordinated behaviours, such as whole body contrations. Previous studies have indicated diurnal variability in number of contractions, and in... more
Sponges (phylum Porifera) are metazoans without muscles and nervous system. Still, they perform coordinated behaviours, such as whole body contrations. Previous studies have indicated diurnal variability in number of contractions, and in expression of circadian clock genes. Here we show that diurnal patterns are present in the contraction-expansion behaviour of the demosponge Tethya wilhelma using infrared videography and a simulated night/day-cycle including sunset and sunrise mimic. In addition, we show that this behaviour is at least strongly influenced by the ambient light intensity and therefore implicates light-sensing capabilities in this sponge species. This is backed by our finding that T. wilhelma consistently contracts at sunrise, and that this pattern disappears both when the sponge is kept in constant darkness and when in constant light.
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musculature in Gnathostomula armata
The paper aims to elucidate the physico-chemical characteristics of the shell of mangrove horseshoe crabs (Carcinoscorpius rotundicauda) and determine the compilation matrix for the first time. The shell composition matrix of C.... more
The paper aims to elucidate the physico-chemical characteristics of the shell of mangrove horseshoe crabs (Carcinoscorpius rotundicauda) and determine the compilation matrix for the first time. The shell composition matrix of C. rotundicauda has never been studied in detail before, especially the shape of the foam, the chemical composition, the functional groups and the mechanical-physical and thermal properties of the shell. Based on this study, the shell structure of the mangrove horseshoe crab has the potential to be used as the base structure for developing bio-foam insulator material in the future. Therefore, the shell of mangrove horseshoe crabs has a unique natural structure in the form of foam. Its robust and elastic structure has the potential for further development for new marine biomaterials. The formation and composition of horseshoe crab shells foam are also believed to be multifunctional in mobility, used for defense mechanisms and thermal stability. The horseshoe cra...
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journal or publication title Nature Communications volume 4 page range 1537 year 2013-02
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Horseshoe crabs are living fossils found in Indonesia. This study examined the food habit of horseshoe crabs (Carcinoscorpius rotundicauda and Tachypleus gigas) collected from Balikpapan coastal waters, East Kalimantan. Horseshoe crabs... more
Horseshoe crabs are living fossils found in Indonesia. This study examined the food habit of horseshoe crabs (Carcinoscorpius rotundicauda and Tachypleus gigas) collected from Balikpapan coastal waters, East Kalimantan. Horseshoe crabs were captured using gill nets and picked by hand along the Balikpapan coast. The width of the prosoma and the body weight of each individual were measured, and the gut contents were analysed to determine the preponderance index, food niche breadth, and niche overlap. Carcinoscorpius rotundicauda prosoma widths ranged from 4.1 to 15.4 cm and those of Tachypleus gigas ranged from 2.8 to 24 cm. Eight food items were found in the gut of the horseshoe crabs, namely: bivalves, gastropods, scaphopoda, polychaetes, echinoderms, crustaceans, leaf litter and others. Based on the preponderance index, gastropods were the main food item of the two horseshoe crab species. In accordance to the food composition the horseshoe crabs inhabiting Balikpapan coastal water...
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Research Interests: Biology and Biodiversity
The duplication of genes can occur through various mechanisms and is thought to make a major contribution to the evolutionary diversification of organisms. There is increasing evidence for a large-scale duplication of genes in some... more
The duplication of genes can occur through various mechanisms and is thought to make a major contribution to the evolutionary diversification of organisms. There is increasing evidence for a large-scale duplication of genes in some chelicerate lineages including two rounds of whole genome duplication (WGD) in horseshoe crabs. To investigate this further, we sequenced and analyzed the genome of the common house spider Parasteatoda tepidariorum. We found pervasive duplication of both coding and non-coding genes in this spider, including two clusters of Hox genes. Analysis of synteny conservation across the P. tepidariorum genome suggests that there has been an ancient WGD in spiders. Comparison with the genomes of other chelicerates, including that of the newly sequenced bark scorpion Centruroides sculpturatus, suggests that this event occurred in the common ancestor of spiders and scorpions, and is probably independent of the WGDs in horseshoe crabs. Furthermore, characterization of ...
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Priapulus caudatus (phylum Priapulida) is a benthic marine predatory worm with a cosmopolitan distribution. In its digestive tract we detected symbiotic bacteria that were consistently present in specimens collected over 8 years from... more
Priapulus caudatus (phylum Priapulida) is a benthic marine predatory worm with a cosmopolitan distribution. In its digestive tract we detected symbiotic bacteria that were consistently present in specimens collected over 8 years from three sites at the Swedish west coast. Based on their 16S rRNA gene sequence, these symbionts comprise a novel genus of the order Rickettsiales (Alphaproteobacteria). Electron microscopy and fluorescence in situ hybridization (FISH) identified them as extracellular, elongate bacteria closely associated with the microvilli, for which we propose the name "Candidatus Tenuibacter priapulorum". Within Rickettsiales, they form a phylogenetically well-defined, family-level clade with uncultured symbionts of marine, terrestrial, and freshwater arthropods. Cand. Tenuibacter priapulorum expands the host range of this candidate family from Arthropoda to the entire Ecdysozoa, which may indicate an evolutionary adaptation of this bacterial group to the mic...
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Abstract Developmental and free-living stages of the chordoid larva of the cycliophoran species, Symbion pandora Funch and Kristensen 1995, were studied using light and electron microscopy. In the free-living stage of the larva, about 200... more
Abstract Developmental and free-living stages of the chordoid larva of the cycliophoran species, Symbion pandora Funch and Kristensen 1995, were studied using light and electron microscopy. In the free-living stage of the larva, about 200 μm long, four ciliated areas are found: two anterior bands, a ventral ciliated field, and a posterior unit on the ventral side of the foot. The nervous system consists of a dorsal brain and a pair of ventral longitudinal nerves. A gut is absent. A pair of protonephridia, each with a single ...
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Populations of the American horseshoe crab, Limulus polyphemus, have declined, but neither the causes nor the magnitude are fully understood. In order to evaluate historic demography, variation at 12 microsatellite DNA loci surveyed in... more
Populations of the American horseshoe crab, Limulus polyphemus, have declined, but neither the causes nor the magnitude are fully understood. In order to evaluate historic demography, variation at 12 microsatellite DNA loci surveyed in 1218 L. polyphemus sampled from 28 localities was analysed with Bayesian coalescent-based methods. The analysis showed strong declines in population sizes throughout the species' distribution except in the geographically isolated southern-most population in Mexico, where a strong increase in population size was inferred. Analyses suggested that demographic changes in the core of the distribution occurred in association with the recolonization after the Ice Age and also by anthropogenic effects, such as the past overharvest of the species for fertilizer or the current use of the animals as bait for American eel (Anguilla rostrata) and whelk (Busycon spp.) fisheries. This study highlights the importance of considering both climatic changes and anth...