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ORCIDBjarni V. Halldórsson
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2020 – today
- 2023
[j28]Marteinn T. Hardarson
, Gunnar Palsson, Bjarni V. Halldórsson:
NCOurd: modelling length distributions of NCO events and gene conversion tracts. Bioinform. 39(8) (2023)- 2022
- [j27]Thomas Krannich, W. Timothy J. White, Sebastian Niehus, Guillaume Holley, Bjarni V. Halldórsson, Birte Kehr:
Population-scale detection of non-reference sequence variants using colored de Bruijn graphs. Bioinform. 38(3): 604-611 (2022) - 2021
- [j26]Hannes P. Eggertsson, Bjarni V. Halldórsson:
read_haps: using read haplotypes to detect same species contamination in DNA sequences. Bioinform. 37(15): 2215-2217 (2021) - [j25]Koen M. J. De Bontridder, Bjarni V. Halldórsson, Magnús M. Halldórsson, Cor A. J. Hurkens, Jan Karel Lenstra, R. Ravi, Leen Stougie:
Local improvement algorithms for a path packing problem: A performance analysis based on linear programming. Oper. Res. Lett. 49(1): 62-68 (2021) - 2020
- [j24]Snædís Kristmundsdóttir, Hannes P. Eggertsson, Gudny A. Arnadottir, Bjarni V. Halldórsson:
popSTR2 enables clinical and population-scale genotyping of microsatellites. Bioinform. 36(7): 2269-2271 (2020)
2010 – 2019
- 2019
- [j23]Luciano Porretta, Daniele Catanzaro, Bjarni V. Halldórsson, Bernard Fortz:
A Branch & Price algorithm for the minimum cost clique cover problem in max-point tolerance graphs. 4OR 17(1): 75-96 (2019) - [j22]Haukur Tyr Gudmundsson, Karen E. Hansen, Bjarni V. Halldórsson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson:
Clinical decision support system for the management of osteoporosis compared to NOGG guidelines and an osteology specialist: a validation pilot study. BMC Medical Informatics Decis. Mak. 19(1): 27:1-27:8 (2019) - 2017
- [j21]Snædís Kristmundsdóttir, Brynja D. Sigurpálsdóttir, Birte Kehr, Bjarni V. Halldórsson:
popSTR: population-scale detection of STR variants. Bioinform. 33(24): 4041-4048 (2017) - [j20]Bjarni V. Halldórsson, Aron Hjalti Bjornsson, Haukur Tyr Gudmundsson, Elvar Orn Birgisson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson:
Corrigendum to "A Clinical Decision Support System for the Diagnosis, Fracture Risks and Treatment of Osteoporosis". Comput. Math. Methods Medicine 2017: 5472789:1 (2017) - [j19]Daniele Catanzaro, Steven Chaplick, Stefan Felsner, Bjarni V. Halldórsson, Magnús M. Halldórsson, Thomas Hixon, Juraj Stacho:
Max point-tolerance graphs. Discret. Appl. Math. 216: 84-97 (2017) - 2016
- [j18]Bjarni V. Halldórsson, Magnús M. Halldórsson, Elena Losievskaja, Mario Szegedy:
Streaming Algorithms for Independent Sets in Sparse Hypergraphs. Algorithmica 76(2): 490-501 (2016) - [j17]Birte Kehr, Páll Melsted, Bjarni V. Halldórsson:
PopIns: population-scale detection of novel sequence insertions. Bioinform. 32(7): 961-967 (2016) - [j16]Yusuke Aoki, Bjarni V. Halldórsson, Magnús M. Halldórsson, Takehiro Ito, Christian Konrad, Xiao Zhou:
The minimum vulnerability problem on specific graph classes. J. Comb. Optim. 32(4): 1288-1304 (2016) - 2015
- [j15]Bjarni V. Halldórsson, Aron Hjalti Bjornsson, Haukur Tyr Gudmundsson, Elvar Orn Birgisson, Björn Rúnar Lúðvíksson, Björn Gudbjornsson:
A Clinical Decision Support System for the Diagnosis, Fracture Risks and Treatment of Osteoporosis. Comput. Math. Methods Medicine 2015: 189769:1-189769:7 (2015) - [i1]Daniele Catanzaro, Steven Chaplick, Stefan Felsner, Bjarni V. Halldórsson, Magnús M. Halldórsson, Thomas Hixon, Juraj Stacho:
Max Point-Tolerance Graphs. CoRR abs/1508.03810 (2015) - 2014
- [j14]Páll Melsted, Bjarni V. Halldórsson:
KmerStream: streaming algorithms for k-mer abundance estimation. Bioinform. 30(24): 3541-3547 (2014) - [c16]Yusuke Aoki, Bjarni V. Halldórsson, Magnús M. Halldórsson, Takehiro Ito, Christian Konrad, Xiao Zhou:
The Minimum Vulnerability Problem on Graphs. COCOA 2014: 299-313 - 2013
- [j13]Bjarni V. Halldórsson, Dima Blokh, Roded Sharan:
Estimating population size via line graph reconstruction. Algorithms Mol. Biol. 8: 17 (2013) - [j12]Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson:
An Integer Programming Formulation of the Parsimonious Loss of Heterozygosity Problem. IEEE ACM Trans. Comput. Biol. Bioinform. 10(6): 1391-1402 (2013) - 2012
- [j11]Derek Aguiar, Bjarni V. Halldórsson, Eric M. Morrow, Sorin Istrail:
DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism. Bioinform. 28(12): 154-162 (2012) - [j10]Jón Sveinbjörnsson, Bjarni V. Halldórsson:
PAIR: polymorphic Alu insertion recognition. BMC Bioinform. 13(S-6): S7 (2012) - [c15]Bjarni V. Halldórsson:
Invited: Algorithmic challenges in DNA sequencing and disease association. ICCABS 2012: 1 - [c14]Daniele Catanzaro, Martine Labbé, Bjarni V. Halldórsson:
A Mixed Integer Programming Model for the Parsimonious Loss of Heterozygosity Problem. ISBRA 2012: 24-35 - [c13]Bjarni V. Halldórsson, Dima Blokh, Roded Sharan:
Estimating Population Size via Line Graph Reconstruction. WABI 2012: 69-80 - 2011
- [j9]Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail:
The Clark Phaseable Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. J. Comput. Biol. 18(3): 323-333 (2011) - [j8]Bjarni V. Halldórsson, Daniel Gudbjartsson:
An Algorithm for Detecting High Frequency Copy Number Polymorphisms Using SNP Arrays. J. Comput. Biol. 18(8): 955-966 (2011) - [c12]Bjarni V. Halldórsson, Derek Aguiar, Sorin Istrail:
Haplotype Phasing By Multi-Assembly of Shared Haplotypes: Phase-Dependent Interactions Between Rare Variants. Pacific Symposium on Biocomputing 2011: 88-99 - 2010
- [j7]Sergey V. Avgustinovich, Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev:
On shortest crucial words avoiding abelian powers. Discret. Appl. Math. 158(6): 605-607 (2010) - [j6]Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev:
Crucial abelian k-power-free words. Discret. Math. Theor. Comput. Sci. 12(5): 83-96 (2010) - [c11]Bjarni V. Halldórsson, Magnús M. Halldórsson, Elena Losievskaja, Mario Szegedy:
Streaming Algorithms for Independent Sets. ICALP (1) 2010: 641-652 - [c10]Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail:
The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS. RECOMB 2010: 158-173
2000 – 2009
- 2009
- [c9]Amy Glen, Bjarni V. Halldórsson, Sergey Kitaev:
Crucial Words for Abelian Powers. Developments in Language Theory 2009: 264-275 - 2006
- [j5]Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot:
A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. J. Comput. Biol. 13(2): 320-335 (2006) - [j4]Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail:
Islands of Tractability for Parsimony Haplotyping. IEEE ACM Trans. Comput. Biol. Bioinform. 3(3): 303-311 (2006) - 2005
- [c8]Roded Sharan, Bjarni V. Halldórsson, Sorin Istrail:
Islands of Tractability for Parsimony Haplotyping. CSB 2005: 65-72 - [c7]Dannie Durand, Bjarni V. Halldórsson, Benjamin Vernot:
A Hybrid Micro-Macroevolutionary Approach to Gene Tree Reconstruction. RECOMB 2005: 250-264 - 2003
- [j3]Russell Schwartz, Bjarni V. Halldórsson, Vineet Bafna, Andrew G. Clark, Sorin Istrail:
Robustness of Inference of Haplotype Block Structure. J. Comput. Biol. 10(1): 13-19 (2003) - [j2]Koen M. J. De Bontridder, Bjarni V. Halldórsson, Magnús M. Halldórsson, Cor A. J. Hurkens, Jan Karel Lenstra, R. Ravi, Leen Stougie:
Approximation algorithms for the test cover problem. Math. Program. 98(1-3): 477-491 (2003) - [c6]Liliana Florea, Bjarni V. Halldórsson, Oliver Kohlbacher, Russell Schwartz, Stephen Hoffman, Sorin Istrail:
Epitope Prediction Algorithms for Peptide based Vaccine Design. CSB 2003: 17-26 - [c5]Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail:
Combinatorial Problems Arising in SNP and Haplotype Analysis. DMTCS 2003: 26-47 - [c4]Vineet Bafna, Bjarni V. Halldórsson, Russell Schwartz, Andrew G. Clark, Sorin Istrail:
Haplotypes and informative SNP selection algorithms: don't block out information. RECOMB 2003: 19-27 - 2002
- [j1]Alan M. Frieze, Bjarni V. Halldórsson:
Optimal Sequencing by Hybridization in Rounds. J. Comput. Biol. 9(2): 355-369 (2002) - [c3]Bjarni V. Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail:
A Survey of Computational Methods for Determining Haplotypes. Computational Methods for SNPs and Haplotype Inference 2002: 26-47 - 2001
- [c2]Bjarni V. Halldórsson, Magnús M. Halldórsson, R. Ravi:
On the Approximability of the Minimum Test Collection Problem. ESA 2001: 158-169 - [c1]Alan M. Frieze, Bjarni V. Halldórsson:
Optimal sequencing by hybridization in rounds. RECOMB 2001: 141-148
Coauthor Index
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