Location via proxy:   [ UP ]  
[Report a bug]   [Manage cookies]                
skip to main content
10.1007/978-3-319-24027-5_29guideproceedingsArticle/Chapter ViewAbstractPublication PagesConference Proceedingsacm-pubtype
Article

Is Concept Mapping Useful for Biomedical Information Retrieval?

Published: 08 September 2015 Publication History

Abstract

Concepts have been extensively used in biomedical information retrieval BIR; but the experimental results have often showed limited or no improvement compared to a traditional bag-of-words method. In this paper, we analyze the problems in concept mapping, and show how they can affect the results of BIR. This suggests a flexible utilization of the identified concepts.

References

[1]
Aronson, A.R.: Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program. In: Proc. of the AMIA Symposium, pp. 17---21 2001
[2]
Bodenreider, O.: The unified medical language system UMLS: integrating biomedical terminology. Nucleic Acids Research 32Suppl. 1, D267---D270 2004
[3]
Goeuriot, L., Jones, G., Kelly, L., Leveling, J., Hanbury, A., Müller, H., Salanterä, S., Suominen, H., Zuccon, G.: ShARe/CLEF eHealth Evaluation Lab 2013, Task 3: Information Retrieval to Address Patients' Questions when Reading Clinical Reports. In: Proc. of CLEF 2013 2013
[4]
Goeuriot, L., Kelly, L., Li, W., Palotti, J., Pecina, P., Zuccon, G., Hanbury, A., Jones, G., Müller, H.: ShARe/CLEF eHealth Evaluation Lab 2014, Task 3: User-centred health information retrieval. In: Proc. of CLEF 2014 2014
[5]
Hersh, W., Hickam, D., Leone, T.: Words, concepts, or both: optimal indexing units for automated information retrieval. In: Proc. of 16th Annual Symposium on Computer Applications in Medical Care, pp. 644---648 1992
[6]
Koopman, B., Zuccon, G., Nguyen, A., Vickers, D., Bruza, P.: Exploiting SNOMED CT concepts and relationships for clinical information retrieval: Australian e-Health Research Centre and Queensland University of Technology at the TREC 2012 Medical Track 2012
[7]
Lipscomb, C.E.: Medical subject headings MeSH. Bulletin of the Medical Library Association 883, 265---266 2000
[8]
Metzler, D., Croft, W.B.: A Markov random field model for term dependencies. In: Proceedings of SIGIR, pp. 472---479 2005
[9]
Pratt, W., Yetisgen-Yildiz, M.: A study of biomedical concept identification: MetaMap vs. people. In: Proc. of AMIA Annual Symposium, pp. 529---533 2003
[10]
Qi, Y., Laquerre, P.-F.: Retrieving Medical Records with sennamed: NEC Labs America at TREC 2012 Medical Records Track 2012
[11]
Shen, W., Nie, J.Y., Liu, X., Liu, X.: An investigation of the effectiveness of concept-based approach in medical information retrieval GRIUM@CLEF2014 eHealth Task 3. In: Proc. of the ShARe/CLEF eHealth Evaluation Lab 2014
[12]
Spackman, K.A., Campbell, K.E., Côté, R.A.: SNOMED RT: a reference terminology for health care. In: Proc. AMIA Annual Fall Symp., pp. 640---644 1997
[13]
Zhu, D., Carterette, B.: Improving health records search using multiple query expansion collections. In: Proceedings of IEEE International Conference on Bioinformatics and Biomedicine BIBM, pp. 1---7 2012

Cited By

View all
  • (2020)FDCMProceedings of the 29th ACM International Conference on Information & Knowledge Management10.1145/3340531.3412151(1957-1960)Online publication date: 19-Oct-2020

Recommendations

Comments

Information & Contributors

Information

Published In

cover image Guide Proceedings
CLEF'15: Proceedings of the 6th International Conference on Experimental IR Meets Multilinguality, Multimodality, and Interaction - Volume 9283
September 2015
550 pages
ISBN:9783319240268
  • Editors:
  • Josiane Mothe,
  • Jacques Savoy,
  • Jaap Kamps,
  • Karen Pinel-Sauvagnat,
  • Gareth J.F. Jones,
  • Eric Sanjuan,
  • Linda Cappellato,
  • Nicola Ferro

Publisher

Springer-Verlag

Berlin, Heidelberg

Publication History

Published: 08 September 2015

Author Tags

  1. Biomedical information retrieval
  2. Concept
  3. MetaMap
  4. UMLS

Qualifiers

  • Article

Contributors

Other Metrics

Bibliometrics & Citations

Bibliometrics

Article Metrics

  • Downloads (Last 12 months)0
  • Downloads (Last 6 weeks)0
Reflects downloads up to 07 Mar 2025

Other Metrics

Citations

Cited By

View all
  • (2020)FDCMProceedings of the 29th ACM International Conference on Information & Knowledge Management10.1145/3340531.3412151(1957-1960)Online publication date: 19-Oct-2020

View Options

View options

Figures

Tables

Media

Share

Share

Share this Publication link

Share on social media