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review-article

Supervised and Semi-supervised Methods for Abdominal Organ Segmentation: A Review

Published: 01 December 2021 Publication History

Abstract

Abdominal organ segmentation is the segregation of a single or multiple abdominal organ(s) into semantic image segments of pixels identified with homogeneous features such as color and texture, and intensity. The abdominal organ(s) condition is mostly connected with greater morbidity and mortality. Most patients often have asymptomatic abdominal conditions and symptoms, which are often recognized late; hence the abdomen has been the third most common cause of damage to the human body. That notwithstanding, there may be improved outcomes where the condition of an abdominal organ is detected earlier. Over the years, supervised and semi-supervised machine learning methods have been used to segment abdominal organ(s) in order to detect the organ(s) condition. The supervised methods perform well when the used training data represents the target data, but the methods require large manually annotated data and have adaptation problems. The semi-supervised methods are fast but record poor performance than the supervised if assumptions about the data fail to hold. Current state-of-the-art methods of supervised segmentation are largely based on deep learning techniques due to their good accuracy and success in real world applications. Though it requires a large amount of training data for automatic feature extraction, deep learning can hardly be used. As regards the semi-supervised methods of segmentation, self-training and graph-based techniques have attracted much research attention. Self-training can be used with any classifier but does not have a mechanism to rectify mistakes early. Graph-based techniques thrive on their convexity, scalability, and effectiveness in application but have an out-of-sample problem. In this review paper, a study has been carried out on supervised and semi-supervised methods of performing abdominal organ segmentation. An observation of the current approaches, connection and gaps are identified, and prospective future research opportunities are enumerated.

References

[1]
Reuben A Examination of the abdomen Clinical Liver Disease 2016 7 6 143-150
[2]
Dictionary T N C I, Terms C, Nci G, and Widget C T NCI dictionary of cancer terms 2020
[3]
Bilal M, Voin V, Topale N, Iwanaga J, Loukas M, and Tubbs R S The clinical anatomy of the physical examination of the abdomen: A comprehensive review Clinical Anatomy 2017 30 3 352-356
[4]
Kaur R and Juneja M Sa P K, Sahoo M N, Murugappan M, Wu Y L, and Majhi B Comparison of different renal imaging modalities: An overview Progress in Intelligent Computing Techniques: Theory, Practice, and Applications 2018 Singapore Springer 47-57
[5]
Shojaee M, Sabzghabaei A, and Heidari A Efficacy of new scoring system for diagnosis of abdominal injury after blunt abdominal trauma in patients referred to emergency department Chinese Journal of Traumatology 2020 23 3 145-148
[6]
Ricci Z J, Oh S K, Stein M W, Kaul B, Flusberg M, Chernyak V, Rozenblit A M, and Mazzariol F S Solid organ abdominal ischemia, part I: Clinical features, etiology, imaging findings, and management Clinical Imaging 2016 40 4 720-731
[7]
Ricci Z J, Mazzariol F S, Kaul B, Oh S K, Chernyak V, Flusberg M, Stein M W, and Rozenblit A M Hollow organ abdominal ischemia, part II: Clinical features, etiology, imaging findings and management Clinical Imaging 2016 40 4 751-764
[8]
De Dios Soler-morejón C, Lombardo-vaillant T A, Tamargo-Barbeito T O, and Malbrain M L N G Predicting abdominal surgery mortality: A model based on intra-abdominal pressure MEDICC Review 2017 19 4 16-20
[9]
Chinmayi P, Agilandeeswari L, and Prabukumar M Survey of image processing techniques in medical image analysis: Challenges and methodologies Proceedings of the 8th International Conference on Soft Computing and Pattern Recognition 2016 Vellore, India Springer 460-471
[10]
Dabass M, Vashisth S, and Vig R Effectiveness of region growing based segmentation technique for various medical images — a study Proceedings of the 4th International Conference on Recent Developments in Science, Engineering and Technology Data Science and Analytics 2018 Gurgaon, India Springer 234-259
[11]
C. Chen, C. Qin, H. Q. Qiu, G. Tarroni, J. M. Duan, W. J. Bai, D. Rueckert. Deep learning for cardiac image segmentation: A review. Frontiers in Cardiovascular Medicine, vol. 7, Article number 25, 2020.
[12]
Zhang G, Dong S H, Xu H, Zhang H Y, Wu Y J, Zhang Y W, Xi X M, and Yin Y L Correction learning for medical image segmentation IEEE Access 2019 7 143597-143607
[13]
Taghanaki S A, Abhishek K, Cohen J P, Cohen-Adad J, and Hamarneh G Deep semantic segmentation of natural and medical images: A review Artificial Intelligence Review 2021 54 1 137-178
[14]
ACM Computing Surveys 2019 52 4
[15]
Li X M, Chen H, Qi X J, Dou Q, Fu C W, and Heng P A H-DenseUNet: Hybrid densely connected UNet for liver and tumor segmentation from CT volumes IEEE Transactions on Medical Imaging 2018 37 12 2663-2674
[16]
Yang Z Z, Zhang L, Zhang M, Feng J, Wu Z, Ren F G, and Lv Y Pancreas segmentation in abdominal CT scans using inter-/intra-slice contextual information with a cascade neural network Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society 2019 Berlin, Germany IEEE 5937-5940
[17]
Gloger O, Bülow R, Tünnies K, and Völzke H Automatic gallbladder segmentation using combined 2D and 3D shape features to perform volumetric analysis in native and secretin — enhanced MRCP sequences Magnetic Resonance Materials in Physics, Biology and Medicine 2018 31 3 383-397
[18]
Huo Y K, Liu J Q, Xu Z B, Harrigan R L, Assad A, Abramson R G, and Landman B A Robust multicontrast MRI spleen segmentation for splenomegaly using multi-atlas segmentation IEEE Transactions on Biomedical Engineering 2018 65 2 336-343
[19]
Wang Y, Zhou Y Y, Shen W, Park S, Fishman E K, and Yuille A L Abdominal multi-organ segmentation with organ-attention networks and statistical fusion Medical Image Analysis 2019 55 88-102
[20]
Gibson E, Giganti F, Hu Y P, Bonmati E, Bandula S, Gurusamy K, Davidson B, Pereira S P, Clarkson M J, and Barratt D C Automatic multi-organ segmentation on abdominal CT with dense V-Networks IEEE Transactions on Medical Imaging 2018 37 8 1822-1834
[21]
S. Q. Chen, X. Zhong, S. Dorn, N. Ravikumar, Q. H. Tao, X. L. Huang, M. Lell, M. Kachelriess, A. Maier. Improving generalization capability of multi-organ segmentation models using dual-energy CT. IEEE Transactions on Radiation and Plasma Medical Sciences, to be published.
[22]
Román K L, Inmaculada García Ocaña M, Urzelai N L, Ángel González Ballester M, and Oliver I M Medical image segmentation using deep learning Deep Learning in Healthcare: Paradigms and Applications 2020 Cham Springer 17-31
[23]
Chouhan S S, Kaul A, and Singh U P Image segmentation using computational intelligence techniques: Review Archives of Computational Methods in Engineering 2019 26 3 533-596
[24]
Wang G T, Li W Q, Aertsen M, Deprest J, Ourselin S, and Vercauteren T Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks Neurocomputing 2019 338 34-45
[25]
Seo H, Khuzani M B, Vasudevan V, Huang C, Ren H Y, Xiao R X, Jia X, and Xing L Machine learning techniques for biomedical image segmentation: An overview of technical aspects and introduction to state-of-art applications Medical Physics 2020 47 5 e148-e167
[26]
Chebli A, Djebbar A, and Marouani H F Semi-supervised learning for medical application: A survey Proceedings of International Conference on Applied Smart Systems 2018 Medea, Algeria IEEE 24-25
[27]
Kulwa F, Li C, Zhao X, Cai B C, Xu N, Qi S L, Chen S, and Teng Y Y A state-of-the-art survey for microorganism image segmentation methods and future potential IEEE Access 2019 7 100243-100269
[28]
Scientific Reports 2018 8 1
[29]
Borga M, Andersson T, and Leinhard O D Semi-supervised learning of anatomical manifolds for atlas-based segmentation of medical images Proceedings of the 23rd International Conference on Pattern Recognition 2016 Cancun, Mexico IEEE 3146-3149
[30]
Yao X, Song Y Q, and Liu Z Advances on pancreas segmentation: A review Multimedia Tools and Applications 2019 79 6799-6821
[31]
Torres H R, Queirós S, Morais P, Oliveira B, Fonseca J C, and Vilaça J L Kidney segmentation in ultrasound, magnetic resonance and computed tomography images: A systematic review Computer Methods and Programs in Biomedicine 2018 157 49-67
[32]
Gotra A, Sivakumaran L, Chartrand G, Vu K N, Vandenbroucke-Menu F, Kauffmann C, Kadoury S, Gallix B, De Guise J A, and Tang A Liver segmentation: Indications, techniques and future directions Insights into Imaging 2017 8 4 377-392
[33]
Moghbel M, Mashohor S, Mahmud R, and Saripan M I B Review of liver segmentation and computer assisted detection/diagnosis methods in computed tomography Artificial Intelligence Review 2018 50 4 497-537
[34]
Kumar H, Desouza S V, and Petrov M S Automated pancreas segmentation from computed tomography and magnetic resonance images: A systematic review Computer Methods and Programs in Biomedicine 2019 178 319-328
[35]
Summers R M Progress in fully automated abdominal CT interpretation American Journal of Roentgenology 2016 207 1 67-79
[36]
Rehman A and Khan F G A deep learning based review on abdominal images Multimedia Tools and Applications 2021 80 20 30321-30352
[37]
Meng F M, Guo L L, Wu Q B, and Li H L A new deep segmentation quality assessment network for refining bounding box based segmentation IEEE Access 2019 7 59514-59523
[38]
Jiang Z, Xu C, Tu X H, Li T, and Gao N A Co-segmentation method for image pairs based on maximum common subgraph and GrabCut Proceedings of the 2nd International Conference on Advances in Image Processing 2018 Chengdu, China ACM 39-43
[39]
Remote Sensing 2019 11 5
[40]
Dosovitskiy A, Fischer P, Springenberg J T, Riedmiller M, and Brox T Discriminative unsupervised feature learning with exemplar convolutional neural networks IEEE Transactions on Pattern Analysis and Machine Intelligence 2016 38 9 1734-1747
[41]
S. Li, G. K. F. Tso, K. J. He. Bottleneck feature supervised U-Net for pixel-wise liver and tumor segmentation. Expert Systems with Applications, vol. 145, Article number 113131, 2020.
[42]
Deng Y, Sun Y, Zhu Y P, Xu Y, Yang Q X, Zhang S, Wang Z Y, Sun J R, Zhao W L, Zhou X B, and Yuan K H A new framework to reduce doctor’s workload for medical image annotation IEEE Access 2019 7 107097-107104
[43]
Li C Y, Wang X Y, Eberl S, Fulham M, Yin Y, and Feng D D Supervised variational model with statistical inference and its application in medical image segmentation IEEE Transactions on Biomedical Engineering 2015 62 1 196-207
[44]
Kozegar E, Soryani M, Behnam H, Salamati M, and Tan T Mass segmentation in automated 3-D breast ultrasound using adaptive region growing and supervised edge-based deformable model IEEE Transactions on Medical Imaging 2018 37 4 918-928
[45]
Xian M, Zhang Y T, Cheng H D, Xu F, Zhang B Y, and Ding J R. Automatic breast ultrasound image segmentation: A survey Pattern Recognition 2018 79 340-355
[46]
Cheplygina V, de Bruijne M, and Pluim J P W Not-so-supervised: A survey of semi-supervised, multi-instance, and transfer learning in medical image analysis Medical Image Analysis 2019 54 280-296
[47]
Shi Z Y, Yang Y X, Hospedales T M, and Xiang T Weakly-supervised image annotation and segmentation with objects and attributes IEEE Transactions on Pattern Analysis and Machine Intelligence 2017 39 12 2525-2538
[48]
Enguehard J, O’Halloran P, and Gholipour A Semi-supervised learning with deep embedded clustering for image classification and segmentation IEEE Access 2019 7 11093-11104
[49]
Chang Q, Yan Z N, Lou Y X, Axel L, and Metaxas D N Soft-Label guided semi-supervised learning for Bi-ventricle segmentation in cardiac cine MRI Proceedings of the 17th IEEE International Symposium on Biomedical Imaging 2020 Iowa City, USA IEEE 1752-1755
[50]
Oliveira B, Queirós S, Morais P, Torres H R, Gomes-Fonseca J, Fonseca J C, and Vilaça J L A novel multi-atlas strategy with dense deformation field reconstruction for abdominal and thoracic multi-organ segmentation from computed tomography Medical Image Analysis 2018 45 108-120
[51]
Zhou Y Y, Wang Y, Tang P, Bai S, Shen W, Fishman E, and Yuille A Semi-supervised 3D abdominal multi-organ segmentation via deep multi-planar Co-Training Proceedings of IEEE Winter Conference on Applications of Computer Vision 2019 Waikoloa, USA IEEE 121-140
[52]
Utomo T W, Cahyadi A I, and Ardiyanto I Suction-based grasp point estimation in cluttered environment for robotic manipulator using deep learning-based affordance map International Journal of Automation and Computing 2021 18 2 277-287
[53]
Tao J H, Huang J, Li Y, Lian Z, and Niu M Y Semi-supervised ladder networks for speech emotion recognition International Journal of Automation and Computing 2019 16 4 437-448
[54]
Zhou Z H A brief introduction to weakly supervised learning National Science Review 2018 5 1 44-53
[55]
Liu K Y, Yang X B, Yu H L, Mi J S, Wang P X, and Chen X J Rough set based semi-supervised feature selection via ensemble selector Knowledge-based Systems 2019 165 282-296
[56]
Chong Y W, Ding Y, Yan Q, and Pan S M Graph-based semi-supervised learning: A review Neurocomputing 2020 480 216-230
[57]
Zhao A, Balakrishnan G, Durand F, Guttag J V, and Dalca A V Data augmentation using learned transformations for one-shot medical image segmentation Proceedings of IEEE/CVF Conference on Computer Vision and Pattern Recognition 2019 Long Beach, USA IEEE 8535-8545
[58]
A. Meyer, S. Ghosh, D. Schindele, M. Schostak, S. Stober, C. Hansen, M. Rak. Uncertainty-aware temporal self-learning (UATS): Semi-supervised learning for segmentation of prostate zones and beyond. Artificial Intelligence in Medicine, vol. 116, Article number 102073, 2021.
[59]
Gu B, Yuan X T, Chen S C, and Huang H New incremental learning algorithm for semi-supervised support vector machine Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining 2018 London, UK ACM 1475-1484
[60]
Ding S F, Zhu Z B, and Zhang X K An overview on semi-supervised support vector machine Neural Computing and Applications 2017 28 5 969-978
[61]
Yagasaki S, Koizumi N, Nishiyama Y, Kondo R, Imaizumi T, Matsumoto N, Ogawa M, and Numata K Estimating 3-dimensional liver motion using deep learning and 2-dimensional ultrasound images International Journal of Computer Assisted Radiology and Surgery 2020 15 12 1989-1995
[62]
Conze P H, Noblet V, Rousseau F, Heitz F, Memeo R, and Pessaux P Random forests on hierarchical multi-scale supervoxels for liver tumor segmentation in dynamic contrast-enhanced CT scans Proceedings of the 13th IEEE International Symposium on Biomedical Imaging 2016 Prague, Czech Republic IEEE 416-419
[63]
M. Chung, J. Lee, M. Lee, J. Lee, Y. G. Shin. Deeply self-supervised contour embedded neural network applied to liver segmentation. Computer Methods and Programs in Biomedicine, vol. 192, Article number 105447, 2020.
[64]
Xu M F, Wang Y, Chi Y, and Hua X S Training liver vessel segmentation deep neural networks on noisy labels from contrast CT imaging Proceedings of the 17th IEEE International Symposium on Biomedical Imaging 2020 Iowa City, USA IEEE 1552-1555
[65]
Devi R M and Seenivasagam V Automatic segmentation and classification of liver tumor from CT image using feature difference and SVM based classifier-soft computing technique Soft Computing 2020 24 24 18591-18598
[66]
Seo H, Huang C, Bassenne M, Xiao R X, and Xing L Modified U-Net (mU-Net) with incorporation of object-dependent high level features for improved liver and liver-tumor segmentation in CT images IEEE Transactions on Medical Imaging 2020 39 5 1316-1325
[67]
Fang X, Xu S, Wood B J, and Yan P K Deep learning-based liver segmentation for fusion-guided intervention International Journal of Computer Assisted Radiology and Surgery 2020 15 6 963-972
[68]
Tang X K, Jafargholi Rangraz E, Coudyzer W, Bertels J, Robben D, Schramm G, Deckers W, Maleux G, Baete K, Verslype C, Gooding M J, Deroose C M, and Nuyts J Whole liver segmentation based on deep learning and manual adjustment for clinical use in SIRT European Journal of Nuclear Medicine and Molecular Imaging 2020 47 12 2742-2752
[69]
Ng Y S, Xi Y, Qian Y X, Ananthakrishnan L, Soesbe T C, Lewis M, Lenkinski R, and Fielding J R Use of spectral detector computed tomography to improve liver segmentation and volumetry Journal of Computer Assisted Tomography 2020 44 2 197-203
[70]
Sensors 2020 20 5
[71]
G. M. Cunha, K. A. Hasenstab, A. Higaki, K. Wang, T. Delgado, R. L. Brunsing, A. Schlein, A. Schwartzman, A. Hsiao, C. B. Sirlin, K. J. Fowler. Convolutional neural network-automated hepatobiliary phase adequacy evaluation may optimize examination time. European Journal of Radiology, vol. 124, Article number 108837, 2020.
[72]
Albishri A A, Shah S J H, and Lee Y CU-Net: Cascaded U-Net model for automated liver and lesion segmentation and summarization Proceedings of IEEE International Conference on Bioinformatics and Biomedicine 2019 San Diego, USA IEEE
[73]
Wu Y C, Zhou Q, Hu H J, Rong G H, Li Y W, and Wang S Y Hepatic lesion segmentation by combining plain and contrast-enhanced CT images with modality weighted U-Net Proceedings of IEEE International Conference on Image Processing 2019 Taipei, China IEEE 255-259
[74]
Aganj I and Fischl B Expected label value computation for atlas-based image segmentation Proceedings of the 16th IEEE International Symposium on Biomedical Imaging 2019 Venice, Italy IEEE 334-338
[75]
Jansen M J A, Kuijf H J, and Pluim J P W Optimal input configuration of dynamic contrast enhanced MRI in convolutional neural networks for liver segmentation Proceedings of SPIE 10949, Medical Imaging 2019 2019 San Diego, USA SPIE
[76]
Su T Y, Yang W T, Cheng T C, He Y F, Yang C J, and Fang Y H Computer-aided liver cirrhosis diagnosis via automatic liver segmentation and machine learning algorithm Proceedings of SPIE 11050, International Forum on Medical Imaging in Asia 2019 2019 Singapore SPIE
[77]
Dura E, Domingo J, Göçeri E, and Martí-Bonmatí L A method for liver segmentation in perfusion MR images using probabilistic atlases and viscous reconstruction Pattern Analysis and Applications 2018 21 4 1083-1095
[78]
Tang W, Zou D S, Yang S, and Shi J DSL: Automatic liver segmentation with faster R-CNN and deeplab Proceedings of the 27th International Conference on Artificial Neural Networks and Machine Learning 2018 Rhodes, Greece Springer 137-147
[79]
Dou Q, Yu L Q, Chen H, Jin Y M, Yang X, Qin J, and Heng P A 3D deeply supervised network for automated segmentation of volumetric medical images Medical Image Analysis 2017 41 40-54
[80]
Ben-Cohen A, Diamant I, Klang E, Amitai M, and Greenspan H Fully convolutional network for liver segmentation and lesions detection Proceedings of the 1st International Workshop on Deep Learning and Data Labeling for Medical Applications 2016 Athens, Greece Springer 77-85
[81]
B. C. Anil, P. Dayananda. Automatic liver tumor segmentation based on multi-level deep convolutional networks and fractal residual network. IETE Journal of Research, to be published.
[82]
Alalwan N, Abozeid A, ElHabshy A A, and Alzahrani A Efficient 3D deep learning model for medical image semantic segmentation Alexandria Engineering Journal 2021 60 1 1231-1239
[83]
da Cruz L B, Araújo J D L, Ferreira J L, Diniz J O B, Silva A C, De Almeida J D S, De Paiva A C, and Gattass M Kidney segmentation from computed tomography images using deep neural network Computers in Biology and Medicine 2020 123 103906
[84]
Jin C, Shi F, Xiang D H, Jiang X Q, Zhang B, Wang X M, Zhu W F, Gao E T, and Chen X J 3D fast automatic segmentation of kidney based on modified AAM and random forest IEEE Transactions on Medical Imaging 2016 35 6 1395-1407
[85]
Pan T, Yang G Y, Wang C X, Lu Z W, Zhou Z W, Kong Y Y, Tang L J, Zhu X M, Dillenseger J L, Shu H Z, and Coatrieux J L A Multi-task convolutional neural network for renal tumor segmentation and classification using multi-phasic CT images Proceedings of IEEE International Conference on Image Processing 2019 Taipei, China IEEE 80-813
[86]
Fatemeh Z, Nicola S, Satheesh K, and Eranga U Ensemble U-net-based method for fully automated detection and segmentation of renal masses on computed tomography images Medical Physics 2020 47 9 4032-4044
[87]
S. Yin, Q. M. Peng, H. M. Li, Z. Q. Zhang, X. G. You, K. Fischer, S. L. Furth, G. E. Tasian, Y. Fan. Automatic kidney segmentation in ultrasound images using subsequent boundary distance regression and pixelwise classification networks. Medical Image Analysis, vol. 60, Article number 101602, 2020.
[88]
Scientific Reports 2019 9 1
[89]
Abdeltawab H, Shehatal M, Shalaby A, Mesbah S, El-Baz M, Ghazal M, Alkhali Y, Abouel-Ghar M, Dwyer A C, El-Melegy M, and El-Baz A A new 3D CNN-based CAD system for early detection of acute renal transplant rejection Proceedings of the 24th International Conference on Pattern Recognition 2018 Beijing, China IEEE 3898-3903
[90]
Haghighi M, Warfield S K, and Kurugol S Automatic renal segmentation in DCE-MRI using convolutional neural networks Proceedings of the 15th IEEE International Symposium on Biomedical Imaging 2018 Washington DC, USA IEEE 1534-1537
[91]
Ravishankar H, Thiruvenkadam S, Venkataramani R, and Vaidya V Joint deep learning of foreground, background and shape for robust contextual segmentation Proceedings of the 25th International Conference on Information Processing in Medical Imaging 2017 Boone, USA Springer 622-632
[92]
Tabrizi P R, Mansoor A, Cerrolaza J J, Jago J, and Linguraru M G Automatic kidney segmentation in 3D pediatric ultrasound images using deep neural networks and weighted fuzzy active shape model Proceedings of the 15th IEEE International Symposium on Biomedical Imaging 2018 Washington, USA IEEE 1170-1173
[93]
Khalifa F, Soliman A, Dwyer A C, Gimel’Farb G, and El-Baz A A random forest-based framework for 3D kidney segmentation from dynamic contrast-enhanced CT images Proceedings of IEEE International Conference on Image Processing 2016 Phoenix, USA IEEE 3399-3403
[94]
PLoS One 2019 14 6
[95]
Zhang J, Zhu L R, Yao L W, Ding X W, Chen D, Wu H L, Lu Z H, Zhou W, Zhang L H, An P, Xu B, Tan W, Hu S, Cheng F, and Yu H G Deep learning-based pancreas segmentation and station recognition system in EUS: Development and validation of a useful training tool (with video) Gastrointestinal Endoscopy 2020 92 4 874-885
[96]
Applied Sciences 2020 10 10
[97]
Zheng H Y, Chen Y F, Yue X D, Ma C, Liu X H, Yang P P, and Lu J P Deep pancreas segmentation with uncertain regions of shadowed sets Magnetic Resonance Imaging 2020 68 45-52
[98]
F. Y. Li, W. S. Li, Y. C. Shu, S. Qin, B. Xiao, Z. W. Zhan. Multiscale receptive field based on residual network for pancreas segmentation in CT images. Biomedical Signal Processing and Control, vol. 57, Article number 101828, 2020.
[99]
Zhang Y, Wu J, Wang S M, Liu Y L, Chen Y F, Wu E X, and Tang X Y Liver guided pancreas segmentation Proceedings of the IEEE 17th International Symposium on Biomedical Imaging 2020 Iowa City, USA IEEE 1201-1204
[100]
Yu W H, Chen H, and Wang L S Dense attentional network for pancreas segmentation in abdominal CT scans Proceedings of the 2nd International Conference on Artificial Intelligence and Pattern Recognition 2019 Beijing, China ACM 83-87
[101]
Wang W Z, Song Q Y, Feng R W, Chen T T, Chen J T, Chen D Z, and Wu J A fully 3D cascaded framework for pancreas segmentation Proceedings of the 17th IEEE International Symposium on Biomedical Imaging 2020 Iowa City, USA IEEE 207-211
[102]
Man Y Z, Huang Y S B, Feng J Y, Li X, and Wu F Deep Q learning driven CT pancreas segmentation with geometry-aware U-Net IEEE Transactions on Medical Imaging 2019 38 8 1971-1980
[103]
Farag A, Lu L, Roth H R, Liu J M, Turkbey E, and Summers R M A bottom-up approach for pancreas segmentation using cascaded superpixels and (deep) image patch labeling IEEE Transactions on Image Processing 2017 26 1 386-399
[104]
Zhao N N, Tong N, Ruan D, and Sheng K Fully automated pancreas segmentation with two-stage 3D convolutional neural networks Proceedings of the 22nd International Conference on Medical Image Computing and Computer Assisted Intervention 2019 Shenzhen, China Springer 201-209
[105]
Heinrich M P, Blendowski M, and Oktay O TernaryNet: Faster deep model inference without GPUs for medical 3D segmentation using sparse and binary convolutions International Journal of Computer Assisted Radiology and Surgery 2018 13 9 1311-1320
[106]
Moon H, Huo Y K, Abramson R G, Peters R A, Assad A, Moyo T K, Savona M R, and Landman B A Acceleration of spleen segmentation with end-to-end deep learning method and automated pipeline Computers in Biology and Medicine 2019 107 109-117
[107]
Wang H, Wang G T, Xu Z H, Lei W H, and Zhang S T High- and low-level feature enhancement for medical image segmentation Proceedings of the 10th International Workshop on Machine Learning in Medical Imaging 2019 Shenzhen, China Springer 611-619
[108]
Liu J Q, Huo Y K, Xu Z B, Assad A, Abramson R G, and Landman B A Multi-atlas spleen segmentation on CT using adaptive context learning Proceedings of SPIE 10133, Medical Imaging 2017 2017 Orlando, USA SPIE
[109]
Zhang L, Zhang J M, Shen P Y, Zhu G M, Li P, Lu X Y, Zhang H, Shah S A, and Bennamoun M Block level skip connections across cascaded V-Net for multi-organ segmentation IEEE Transactions on Medical Imaging 2020 39 9 2782-2793
[110]
Park S, Chu L C, Fishman E K, Yuille A L, Vogelstein B, Kinzler K W, Horton K M, Hruban R H, Zinreich E S, Fadaei Fouladi D, Shayesteh S, Graves J, and Kawamoto S Annotated normal CT data of the abdomen for deep learning: Challenges and strategies for implementation Diagnostic and Interventional Imaging 2020 101 1 35-44
[111]
Chen Y H, Ruan D, Xiao J Y, Wang L X, Sun B, Saouaf R, Yang W S, Li D B, and Fan Z Y Fully automated multiorgan segmentation in abdominal magnetic resonance imaging with deep neural networks Medical Physics 2020 47 10 4971-4982
[112]
Fang X and Yan P K Multi-organ segmentation over partially labeled datasets with multi-scale feature abstraction IEEE Transactions on Medical Imaging 2020 39 11 3619-3629
[113]
Ahn Y, Yoon J S, Lee S S, Suk H I, Son J H, Sung Y S, Lee Y, Kang B K, and Kim H S Deep learning algorithm for automated segmentation and volume measurement of the liver and spleen using portal venous phase computed tomography images Korean Journal of Radiology 2020 21 8 987-997
[114]
Heinrich M P, Oktay O, and Bouteldja N OBELISK-Net: Fewer layers to solve 3D multi-organ segmentation with sparse deformable convolutions Medical Image Analysis 2019 54 1-9
[115]
Kakeya H, Okada T, and Oshiro Y 3D U-JAPA-Net: Mixture of convolutional networks for abdominal multi-organ CT segmentation Proceedings of the 21st International Conference on Medical Image Computing and Computer Assisted Intervention 2018 Granada, Spain Springer 352-360
[116]
Bisen R G, Rajrkar A M, and Manthalkar R R Segmentation, detection, and classification of liver tumors for designing a CAD system Proceedings of Conference on Computing in Engineering and Technology 2019 Singapore Springer 103-111
[117]
Chen Y X, Li S Y, Yang S, and Luo W Y Liver Segmentation in CT Images with Adversarial Learning Proceedings of the 15th International Conference on Intelligent Computing Theories and Application 2019 Nanchang, China Springer 470-480
[118]
Asrani S K, Devarbhavi H, Eaton J, and Kamath P S Burden of liver diseases in the world Journal of Hepatology 2019 70 1 151-171
[119]
Liu Z, Song Y Q, Sheng V S, Wang L M, Jiang R, Zhang X L, and Yuan D Q Liver CT sequence segmentation based with improved U-Net and graph cut Expert Systems with Applications 2019 126 54-63
[120]
Zhang Y, Wu J, Jiang B X, Ji D C, Chen Y F, Wu E X, and Tang X Y Deep learning and unsupervised fuzzy C-means based level-set segmentation for liver tumor Proceedings of the 17th IEEE International Symposium on Biomedical Imaging 2020 Iowa City, USA IEEE 1193-1196
[121]
Dey R and Hong Y Hybrid cascaded neural network for liver lesion segmentation Proceedings of the 17th IEEE International Symposium on Biomedical Imaging 2020 Iowa City, USA IEEE 1173-1177
[122]
Farooq Z, Behzadi A H, Blumenfeld J D, Zhao Y Z, and Prince M R Comparison of MRI segmentation techniques for measuring liver cyst volumes in autosomal dominant polycystic kidney disease Clinical Imaging 2018 47 41-46
[123]
Hou X S, Xie C M, Li F Y, Wang J P, Lv C F, Xie G T, and Nan Y A triple-stage self-guided network for kidney tumor segmentation Proceedings of the 17th IEEE International Symposium on Biomedical Imaging 2020 Iowa City, USA IEEE 341-344
[124]
Current Radiology Reports 2016 4 5
[125]
Muneeswaran V and Rajasekaran M P Automatic segmentation of gallbladder using bio-inspired algorithm based on a spider web construction model The Journal of Supercomputing 2019 75 6 3158-3183
[126]
Serra C, Pallotti F, Bortolotti M, Caputo C, Felicani C, Giorgio R D, Barbara G, Nardi E, and Labate A M M A new reliable method for evaluating gallbladder dynamics: The 3-dimensional sonographic examination Journal of Ultrasound in Medicine 2016 35 2 297-304
[127]
Timokhov G V and Semenova E A The decision support algorithm for a surgeon in preoperative planning of mini-laparotomy gallbladder surgery from an arbitrary incision site Proceedings of Ural Symposium on Biomedical Engineering, Radioelectronics and Information Technology 2019 Yekaterinburg, Russia IEEE 74-77
[128]
Tognarelli S, Brancadoro M, Dolosor V, and Menciassi A Soft tool for gallbladder retraction in minimally invasive surgery based on layer jamming Proceedings of the 7th IEEE International Conference on Biomedical Robotics and Biomechatronics 2018 Enschede, Netherlands IEEE 67-72
[129]
Cong L L, Cai Z Q, Guo P, Chen C, Liu D C, Li W Z, Wang L, Zhao Y L, Si S B, and Geng Z M Decision of surgical approach for advanced gallbladder adenocarcinoma based on a Bayesian network Journal of Surgical Oncology 2017 116 8 1123-1131
[130]
Zhang Z, Li N, Gao H Y, Cai Z Q, Si S B, and Geng Z M Preoperative analysis for clinical features of unsuspected gallbladder cancer based on random forest Proceedings of IEEE International Conference on Industrial Engineering and Engineering Management 2018 Bangkok, Thailand IEEE 1160-1164
[131]
Wasnik A P, Davenport M S, Kaza R K, Weadock W J, Udager A, Keshavarzi N, Nan B, and Maturen K E Diagnostic accuracy of MDCT in differentiating gallbladder cancer from acute and xanthogranulomatous cholecystitis Clinical Imaging 2018 50 223-228
[132]
Biomaterials Research 2018 22 1
[133]
Liu S, Liu Q, Yuan X R, Hu R Y, Liang S J, Feng S H, Ai Y H, and Zhang Y Automatic pancreas segmentation via coarse location and ensemble learning IEEE Access 2020 8 2906-2914
[134]
Hu P J, Li X, Tian Y, Tang T Y, Zhou T S, Bai X L, Zhu S Q, Liang T B, and Li J S Automatic pancreas segmentation in CT images with distance-based saliency-aware DenseASPP network IEEE Journal of Biomedical and Health Informatics 2021 25 5 1601-1611
[135]
Gutenko I, Dmitriev K, Kaufman A E, and Barish M A AnaFe: Visual analytics of image-derived temporal features - focusing on the spleen IEEE Transactions on Visualization and Computer Graphics 2017 23 1 171-180
[136]
Huo Y K, Xu Z B, Bao S X, Bermudez C, Moon H, Parvathaneni P, Moyo T K, Savona M R, Assad A, Abramson R G, and Landman B A Splenomegaly segmentation on multi-modal MRI using deep convolutional networks IEEE Transactions on Medical Imaging 2019 38 5 1185-1196
[137]
Wood A, Soroushmehr S M R, Farzaneh N, Fessell D, Ward K R, Gryak J, Kahrobaei D, and Na K Fully automated spleen localization and segmentation using machine learning and 3D active contours Proceedings of the 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society 2018 Honolulu, USA IEEE 53-56
[138]
Küstner T, Müller S, Fischer M, Weiss J, Nikolaou K, Bamberg F, Yang B, Schick F, and Gatidis S Semantic organ segmentation in 3D whole-body MR images Proceedings of the 25th IEEE International Conference on Image Processing 2018 Athens, Greece IEEE 3498-3502
[139]
Zheng H, Lin L F, Hu H J, Zhang Q W, Chen Q Q, Iwamoto Y, Han X H, Chen Y W, Tong R F, and Wu J Semi-supervised segmentation of liver using adversarial learning with deep atlas prior Proceedings of the 22nd International Conference on Medical Image Computing and Computer Assisted Intervention 2019 Shenzhen, China Springer 148-156
[140]
Lu F, Wu F, Hu P J, Peng Z, and Kong D X Automatic 3D liver location and segmentation via convolutional neural network and graph cut International Journal of Computer Assisted Radiology and Surgery 2017 12 2 171-182
[141]
Sangewar S, Daigavane P, and Somulu G A comparative study of k-means and graph cut method of liver segmentation Proceedings of the 3rd International Conference on Electrical, Computer, Electronics & Biomedical Engineering & 3rd International Conference on Business, Economics, and Environment Issues 2017 2540-2543
[142]
W. W. Wu, Z. H. Zhou, S. C. Wu, Y. H. Zhang. Automatic liver segmentation on volumetric CT images using supervoxel-based graph cuts. Computational and Mathematical Methods in Medicine, vol. 2016, Article number 9093721, 2016.
[143]
Liao M, Zhao Y Q, Liu X Y, Zeng Y Z, Zou B J, Wang X F, and Shih F Y Automatic liver segmentation from abdominal CT volumes using graph cuts and border marching Computer Methods and Programs in Biomedicine 2017 143 1-12
[144]
Huang Q, Ding H, Wang X D, and Wang G Z Fully automatic liver segmentation in CT images using modified graph cuts and feature detection Computers in Biology and Medicine 2018 95 198-208
[145]
C. L. Wang, H. R. Roth, T. Kitasaka, M. Oda, Y. Hayashi, Y. Yoshino, T. Yamamoto, N. Sassa, M. Goto, K. Mori. Precise estimation of renal vascular dominant regions using spatially aware fully convolutional networks, tensor-cut and Voronoi diagrams. Computerized Medical Imaging and Graphics, vol. 77, Article number 101642, 2019.
[146]
Yoruk U, Hargreaves B A, and Vasanawala S S Automatic renal segmentation for MR urography using 3D-GrabCut and random forests Magnetic Resonance in Medicine 2018 79 3 1696-1707
[147]
Zheng Q, Warner S, Tasian G, and Fan Y A dynamic graph cuts method with integrated multiple feature maps for segmenting kidneys in 2D ultrasound images Academic Radiology 2018 25 9 1136-1145
[148]
Xia Y D, Yang D, Yu Z D, Liu F Z, Cai J Z, Yu L Q, Zhu Z T, Xu D G, Yuille A, and Roth H Uncertainty-aware multi-view co-training for semi-supervised medical image segmentation and domain adaptation Medical Image Analysis 2020 65 101766
[149]
Chaitanya K, Karani N, Baumgartner C F, Erdil E, Becker A, Donati O, and Konukoglu E Semi-supervised task-driven data augmentation for medical image segmentation Medical Image Analysis 2021 68 101934
[150]
Xia Y D, Liu F Z, Yang D, Cai J Z, Yu L Q, Zhu Z T, Xu D G, Yuille A, and Roth H 3D semi-supervised learning with uncertainty-aware multi-view Co-training Proceedings of IEEE Winter Conference on Applications of Computer Vision 2020 Snowmass, USA IEEE 3635-3644
[151]
Soberanis-Mukul R D, Navab N, and Albarqouni S Uncertainty-based graph convolutional networks for organ segmentation refinement Proceedings of International Conference on Medical Imaging with Deep Learning 2020 755-769
[152]
Tang Y C, Huo Y K, Xiong Y X, Moon H, Assad A, Moyo T K, Savona M R, Abramson R, and Landman B A Improving splenomegaly segmentation by learning from heterogeneous multi-source labels Proceedings of SPIE 10949, Medical Imaging 2019: Image Processing 2019 San Diego, USA SPIE
[153]
Huang R, Zheng Y J, Hu Z Q, Zhang S T, and Li H S Multi-organ segmentation via Co-training weight-averaged models from few-organ datasets Proceedings of the 23rd International Conference on Medical Image Computing and Computer Assisted Intervention 2020 Lima, Peru Springer 146-155
[154]
Takaoka T, Mochizuki Y, and Ishikawa H Multiple-organ segmentation by graph cuts with supervoxel nodes Proceedings of the 15th IAPR International Conference on Machine Vision Applications 2017 Nagoya, Japan IEEE 424-427
[155]
Kéchichian R, Valette S, and Desvignes M Automatic multiorgan segmentation via multiscale registration and graph cut IEEE Transactions on Medical Imaging 2018 37 12 2739-2749
[156]
Saito A, Nawano S, and Shimizu A Fast approximation for joint optimization of segmentation, shape, and location priors, and its application in gallbladder segmentation International Journal of Computer Assisted Radiology and Surgery 2017 12 5 743-756
[157]
Huo Y K, Liu J Q, Xu Z B, Harrigan R L, Assad A, Abramson R G, and Landman B A Multi-atlas segmentation enables robust multi-contrast MRI spleen segmentation for splenomegaly Proceedings of SPIE 10133, Medical Imaging 2017: Image Processing 2017 Orlando, USA SPIE
[158]
Müller H and Unay D Retrieval from and understanding of large-scale multi-modal medical datasets: A review Transactions on Multimedia 2017 19 9 2093-2104
[159]
N. Tajbakhsh, L. Jeyaseelan, Q. Li, J. N. Chiang, Z. H. Wu, X. W. Ding. Embracing imperfect datasets: A review of deep learning solutions for medical image segmentation. Medical Image Analysis, vol. 63, no. 101693, 2020.
[160]
Cai Z Q, Guo P, Li S, Cong L L, and Geng Z M Gallbladder diagnosis and importance analysis based on bayesian network Proceedings of the 23rd International Conference on Industrial Engineering and Engineering Management 2016: Theory and Application of Industrial Engineering 2017 269-273
[161]
Jain N and Kumar V Liver ultrasound image segmentation using region-difference filters Journal of Digital Imaging 2017 30 3 376-390
[162]
Shi C F, Cheng Y Z, Liu F, Wang Y D, Bai J, and Tamura S A hierarchical local region-based sparse shape composition for liver segmentation in CT scans Pattern Recognition 2016 50 88-106
[163]
Liao M, Zhao Y Q, Wang W, Zeng Y Z, Yang Q, Shih F Y, and Zou B J Efficient liver segmentation in CT images based on graph cuts and bottleneck detection Physica Medica 2016 32 11 1383-1396
[164]
Azam M A, Khan K B, Aqeel M, Chishti A R, and Abbasi M N Analysis of the MIDAS and OASIS biomedical databases for the application of multimodal image processing Proceedings of the 2nd International Conference on Intelligent Technologies and Applications 2020 Bahawalpur, Pakistan Springer 581-592
[165]
A. Qayyum, A. Lalande, F. Meriaudeau. Automatic segmentation of tumors and affected organs in the abdomen using a 3D hybrid model for computed tomography imaging. Computers in Biology and Medicine, vol. 127, Article number 104097, 2020.
[166]
Simpson A L, Antonelli M, Bakas S, Bilello M, Farahani K, van Ginneken B, Kopp-Schneider A, Landman B A, Litjens G, Menze B, Ronneberger O, Summers R M, Bilic P, Christ P F, Do R K G, Gollub M, Golia-Pernicka J, Heckers S H, Jarnagin W R, McHugo M K, Napel S, Vorontsov E, Maier-Hein L, and Cardoso M J A large annotated medical image dataset for the development and evaluation of segmentation algorithms 2019
[167]
A. E. Kavur, N. S. Gezer, M. Baris, S. Aslan, P. H. Conze, V. Groza, D. D. Pham, S. Chatterjee, P. Ernst, S. Özkan, B. Baydar, D. Lachinov, S. Han, J. Pauli, F. Isensee, M. Perkonigg, R. Sathish, R. Rajan, D. Sheet, G. Dovletov, O. Speck, A. Nürnberger, K. H. Maier-Hein, G. B. Akar, G. Ünal, O. Dicle, M. A. Selver. CHAOS Challenge - Combined (CT-MR) healthy abdominal organ segmentation. Medical Image Analysis, vol. 69, Article number 101950, 2020.
[168]
Spanier A B and Joskowicz L Automatic atlas-free multi-organ segmentation of contrast-enhanced CT scans Cloud-Based Benchmarking of Medical Image Analysis 2017 Cham, Germany Springer 145-164
[169]
Scientific Data 2014 4 1
[170]
N. Tajbakhsh, L. Jeyaseelan, Q. Li, J. N. Chiang, Z. H. Wu, X. W. Ding. Embracing imperfect datasets: A review of deep learning solutions for medical image segmentation. Medical Image Analysis, vol. 63, Article number 101693, 2020.
[171]
Zeng Y Z, Zhao Y Q, Tang P, Liao M, Liang Y X, Liao S H, and Zou B J Liver vessel segmentation and identification based on oriented flux symmetry and graph cuts Computer Methods and Programs in Biomedicine 2017 150 31-39
[172]
Social Network Analysis and Mining 2020 10 1
[173]
I. Rizwan I Haque, J. Neubert. Deep learning approaches to biomedical image segmentation. Informatics in Medicine Unlocked, vol. 18, Article number 100297, 2020.
[174]
Dreizin D, Chen T N, Liang Y Y, Zhou Y Y, Paes F, Wang Y, Yuille A L, Roth P, Champ K, Li G, McLenithan A, and Morrison J J Added value of deep learning-based liver parenchymal CT volumetry for predicting major arterial injury after blunt hepatic trauma: A decision tree analysis Abdominal Radiology 2021 46 6 2556-2566
[175]
Fan T L, Wang G L, Wang X, Li Y, and Wang H R MSN-Net: A multi-scale context nested U-Net for liver segmentation Signal, Image and Video Processing 2021 15 6 1089-1097
[176]
Cai J Z, Lu L, Zhang Z Z, Xing F Y, Yang L, and Yin Q Pancreas segmentation in MRI using graph-based decision fusion on convolutional neural networks Proceedings of the 19th International Conference on Medical Image Computing and Computer-Assisted Intervention 2016 Athens, Greece Springer 442-450
[177]
Zhang Y, Jiang B X, Wu J, Ji D C, Liu Y L, Chen Y F, Wu E X, and Tang X Y Deep learning initialized and gradient enhanced level-set based segmentation for liver tumor from CT images IEEE Access 2020 8 76056-76068
[178]
Li H Y, Sun Z X, Wu Y J, and Song Y C Semi-supervised point cloud segmentation using self-training with label confidence prediction Neurocomputing 2021 437 227-237
[179]
Geethanjali T M and Minavathi Review on recent methods for segmentation of liver using computed tomography and magnetic resonance imaging modalities Emerging Research in Electronics, Computer Science and Technology 2019 Singapore Springer 631-647

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  1. Supervised and Semi-supervised Methods for Abdominal Organ Segmentation: A Review
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        cover image International Journal of Automation and Computing
        International Journal of Automation and Computing  Volume 18, Issue 6
        Dec 2021
        190 pages

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        Springer-Verlag

        Berlin, Heidelberg

        Publication History

        Published: 01 December 2021
        Accepted: 12 October 2021
        Received: 07 April 2021

        Author Tags

        1. Abdominal organ
        2. supervised segmentation
        3. semi-supervised segmentation
        4. evaluation metrics
        5. image segmentation
        6. machine learning

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