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Parallel genetic algorithm: assessment of performance in multidimensional scaling

Published: 07 July 2007 Publication History

Abstract

Visualization of multidimensional data by means of Multidimensional Scaling (MDS) is a popular technique of exploratory data analysis widely usable, e.g. in analysis of bio-medical data, behavioral science, marketing research, etc. Implementations of MDS methods include a subroutine for an auxiliary global optimization problem. The latter is difficult because of high dimensionality, absence of overall smoothness, and a large number of local minima. In such a situation application of a genetic algorithm (GA) seems reasonable. A favorable assessment of application of GAs in MDS in previous publications is based on heuristic arguments without estimating quantitatively the precision of GA while applied to the solution of corresponding global optimization problems. Indeed, the estimation of precision is difficult because of complexity to find the actual global minimum not only in routine use but also in unique research experiments. Quantitatively the precision of GA was estimated, at least in the experimental problems of modest dimensionality, using global minima found by means of the developed parallel version of explicit enumeration algorithm. To cope with high complexity of the minimization problem a parallel version of GA is developed, and its efficiency for problem of higher dimensionality is investigated.

References

[1]
W. Basalaj. Proximity Visualization of Abstract Data. http://www.pavis.org/essay, 2001.
[2]
I. Borg and P.J.F. Groenen. Modern Multidimensional Scaling: Theory and Applications, 2nd ed. Springer, New York, 2005.
[3]
M.J. Brusco. A simulated annealing heuristics for unidimensional and multidimensional (city-block) scaling of symmetric proximity matrices. Journal of Classification, 18(1):3--33, January 2001.
[4]
E. Cantú-Paz. Efficient and Accurate Parallel Genetic Algorithms. Kluwer Academic Publishers, 2000.
[5]
J.E. Everett. Algorithms for multidimensional scaling. In L.D. Chambers (ed.) The Practical Handbook of Genetic Algorithms, 2nd ed., pages 203--233. Chapman & Hall/CRC, 2001.
[6]
D.E. Goldberg. Genetic Algorithms in Search, Optimization, and Machine Learning. Adison-Wesley, Reading, 1989.
[7]
P.J.F. Groenen, R. Mathar, and W.J. Heiser. The majorization approach to multidimensional scaling for Minkowski distances. Journal of Classification, 12(1):3--19, March 1995.
[8]
P.J.F. Groenen. The Majorization Approach to Multidimensional Scaling. DSWO Press, Leiden, 1993.
[9]
P. Groenen, R. Mathar, and J. Trejos. Global optimization methods for MDS applied to mobile communications. In W. Gaul, O. Opitz, and M. Schander (eds.) Data Analysis: Scientific Models and Practical Applications, pages 459--475. Springer, 2000.
[10]
P.L. Leung and K. Lau. Estimating the city-block two-dimensional scaling model with simulated annealing. European Journal of Operational Research, 158(2):518--524, October 2004.
[11]
R. Mathar. A hybrid global optimization algorithm for multidimensional scaling. In R. Klar and O. Opitz (eds.) Classification and Knowledge Organization, pages 63--71. Springer, 1997.
[12]
R. Mathar and A. Žilinskas. On global optimization in two-dimensional scaling. Acta Applicandae Mathematicae, 33(1):109--118, October 1993.
[13]
Z. Michalewich. Genetic Algorithms + Data Structures = Evolution Programs. Springer, Berlin, 1996.
[14]
H.-P. Schwefel. Evolution and Optimum Seeking. John Wiley & Sons, NY, 1995.
[15]
L. Tsogo, M.-H. Masson, and A. Bardot. Recovery of the metric structure of a pattern of points using minimal information. IEEE Trans. Systems, Man and Cybernetics, Part A, 31(1):30--42, January 2001.
[16]
A. Varoneckas, A. Žilinskas, and J. Žilinskas. Multidimensional scaling using parallel genetic algorithm. In I.D.L. Bogle and J. Žilinskas (eds.) Computer Aided Methods in Optimal Design and Operations, pages 129--138. World Scientific, 2006.
[17]
A. Žilinskas and J. Žilinskas. Parallel hybrid algorithm for global optimization of problems occurring in MDS based visualization. Computers & Mathematics with Applications, 52(1-2):211--224, July 2006.
[18]
A. Žilinskas and J. Žilinskas. Two level minimization in multidimensional scaling. Journal of Global Optimization, ONLINE FIRST, October 2006.

Cited By

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  • (2016)Multidimensional Scaling for Genomic DataAdvances in Stochastic and Deterministic Global Optimization10.1007/978-3-319-29975-4_7(129-139)Online publication date: 5-Nov-2016
  • (2012)Optimization-Based VisualizationMultidimensional Data Visualization10.1007/978-1-4419-0236-8_3(41-112)Online publication date: 9-Sep-2012

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cover image ACM Conferences
GECCO '07: Proceedings of the 9th annual conference on Genetic and evolutionary computation
July 2007
2313 pages
ISBN:9781595936974
DOI:10.1145/1276958
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Published: 07 July 2007

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  1. genetic algorithms
  2. multidimensional scaling

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GECCO '07 Paper Acceptance Rate 266 of 577 submissions, 46%;
Overall Acceptance Rate 1,669 of 4,410 submissions, 38%

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Cited By

View all
  • (2016)Multidimensional Scaling for Genomic DataAdvances in Stochastic and Deterministic Global Optimization10.1007/978-3-319-29975-4_7(129-139)Online publication date: 5-Nov-2016
  • (2012)Optimization-Based VisualizationMultidimensional Data Visualization10.1007/978-1-4419-0236-8_3(41-112)Online publication date: 9-Sep-2012

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