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A fast routability- and performance-driven droplet routing algorithm for digital microfluidic biochips

Published: 04 October 2009 Publication History

Abstract

As the microfluidic technology advances, the design complexity of digital microfluidic biochips (DMFB) are expected to explode in the near future. One of the most critical challenges for DMFB design is the droplet routing problem, which schedules the movement of each droplet in a time-multiplexed manner. In this paper, we propose a fast routability- and performance-driven droplet router for DMFBs. The main contributions of our work are: (1) a global moving vector analysis for constructing preferred routing tracks to minimize the number of used unit cells; (2) an entropy-based equation to determine the routing order of droplets for better routability; (3) a routing compaction technique by dynamic programming to minimize the latest arrival time of droplets. Experimental results show that our algorithm achieves 100% routing completion for all test cases on three Benchmark Suites while the previous algorithms are not. In addition to routability, compared with the state-of-the-art high-performance routing on the Benchmark Suite I [3], the experimental results still show that our algorithm performed better in runtime by 40%, reduced the latest arrival time by 21%, reduced the used unit cells by 10%. Furthermore, experiment results on Benchmark Suite II and III are also very promising. Based on the evaluation of three Benchmark Suites, our algorithm demonstrates the efficiency and robustness of handling complex droplet routing problem over the existing algorithms.

References

[1]
K. F. Böhringer, "Modeling and controlling parallel tasks in droplet based microfluidic systems," IEEE Trans. on CAD, vol. 25, no. 2, pp. 334-344, Feb. 2006.
[2]
S. K. Cho, S.-K. Fan, H. Moon, and C.-J. Kim, "Towards digital microfluidic circuits: Creating, transporting, cutting and merging liquid droplets by electrowetting-based actuation," Proc. MEMS Conf., pp. 32-35, Jan. 2002.
[3]
M. Cho and D. Z. Pan, "A high-performance droplet routing algorithm for digital microfluidic biochips," IEEE Trans. on CAD, vol. 27, no. 10, pp. 1714-1724, Oct. 2008.
[4]
S.-K. Fan, C. Hashi, and C.-J. Kim, "Manipulation of multiple droplets on N×M grid by cross-reference EWOD driving scheme and pressure contact packaging," Proc. MEMS Conf., pp. 694-697, Jan. 2003.
[5]
E. J. Griffith, S. Akella, and M. K. Goldberg, "Performance characterization of a reconfigurable planar-array digital microfluidic system," IEEE Trans. on CAD, vol. 25, no. 2, pp. 345-357, Feb. 2006.
[6]
T. Mukherjee, "Design automation issues for biofluidic microchips," Proc. IEEE/ACM ICCAD, pp. 463-470, Nov. 2005.
[7]
S. Mutlu, F. Svec, C. H. Mastrangelo, J. M. J. Fretcht, and Y. B Gianchandani, "Enhanced electro-osmosis pumping with liquid bridge and field effect flow rectification," Proc. IEEE MEMS, pp. 850-853, Jan. 2004.
[8]
M. G. Pollack, A. D. Shenderov, and R. B. Fair, "Electrowetting-based actuation of droplets for integrated microfluidics," Lab Chip, vol. 2, no. 2, pp. 96-101, May 2002.
[9]
F. Su, K. Chakrabarty, and R. B. Fair, "Microfluidics -based biochips: Technology issues, implementation platforms, and design-automation challenges," IEEE Trans. on CAD, vol. 25, no. 2, pp. 211-223, Feb. 2006.
[10]
F. Su, W. Hwang, and K. Chakrabarty, "Droplet routing in the synthesis of digital microfluidic biochips," Proc. IEEE/ACM DATE, pp. 1-6, Mar. 2006.
[11]
T. Thorsen, S. Maerkl, and S. Quake, "Microfluidic large-scale integration," Science, vol. 298, no. 5593, pp. 580-584, Oct. 2002.
[12]
T. Xu and K. Chakrabarty, "Integrated droplet routing in the synthesis of microfluidic biochips," Proc. IEEE/ACM DAC, pp. 948-953, Jun. 2007.
[13]
T. Xu and K. Chakrabarty, "Automated design of digital microfluidic lab-on-chip under pin-count constraints," Proc. ACM ISPD, pp. 90-98, Apr. 2008.
[14]
P.-H. Yuh, C.-L. Yang, and Y.-W. Chang, "BioRoute: A network-flow based routing algorithm for digital microfluidic biochips," Proc. IEEE/ACM ICCAD, pp. 752-757, Nov. 2007.

Cited By

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  • (2019)Harnessing the Granularity of Micro-Electrode-Dot-Array Architectures for Optimizing Droplet Routing in BiochipsACM Transactions on Design Automation of Electronic Systems10.1145/336599325:1(1-37)Online publication date: 4-Dec-2019
  • (2018)Multi-level droplet routing in active-matrix based digital-microfluidic biochipsProceedings of the 23rd Asia and South Pacific Design Automation Conference10.5555/3201607.3201618(46-51)Online publication date: 22-Jan-2018
  • (2018)BioScript: programming safe chemistry on laboratories-on-a-chipProceedings of the ACM on Programming Languages10.1145/32764982:OOPSLA(1-31)Online publication date: 24-Oct-2018
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cover image Guide Proceedings
ICCD'09: Proceedings of the 2009 IEEE international conference on Computer design
October 2009
528 pages
ISBN:9781424450299

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IEEE Press

Publication History

Published: 04 October 2009

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View all
  • (2019)Harnessing the Granularity of Micro-Electrode-Dot-Array Architectures for Optimizing Droplet Routing in BiochipsACM Transactions on Design Automation of Electronic Systems10.1145/336599325:1(1-37)Online publication date: 4-Dec-2019
  • (2018)Multi-level droplet routing in active-matrix based digital-microfluidic biochipsProceedings of the 23rd Asia and South Pacific Design Automation Conference10.5555/3201607.3201618(46-51)Online publication date: 22-Jan-2018
  • (2018)BioScript: programming safe chemistry on laboratories-on-a-chipProceedings of the ACM on Programming Languages10.1145/32764982:OOPSLA(1-31)Online publication date: 24-Oct-2018
  • (2018)Reliability Hardening Mechanisms in Cyber-Physical Digital-Microfluidic BiochipsACM Journal on Emerging Technologies in Computing Systems10.1145/322905214:3(1-22)Online publication date: 23-Oct-2018
  • (2018)Flexible Droplet Routing in Active Matrix–Based Digital Microfluidic BiochipsACM Transactions on Design Automation of Electronic Systems10.1145/318438823:3(1-25)Online publication date: 16-Mar-2018
  • (2018)A compiler for cyber-physical digital microfluidic biochipsProceedings of the 2018 International Symposium on Code Generation and Optimization10.1145/3168826(365-377)Online publication date: 24-Feb-2018
  • (2015)A General and Exact Routing Methodology for Digital Microfluidic BiochipsProceedings of the IEEE/ACM International Conference on Computer-Aided Design10.5555/2840819.2840941(874-881)Online publication date: 2-Nov-2015
  • (2015)Offline Washing Schemes for Residue Removal in Digital Microfluidic BiochipsACM Transactions on Design Automation of Electronic Systems10.1145/279872621:1(1-33)Online publication date: 2-Dec-2015
  • (2014)Exact routing for digital microfluidic biochips with temporary blockagesProceedings of the 2014 IEEE/ACM International Conference on Computer-Aided Design10.5555/2691365.2691447(405-410)Online publication date: 3-Nov-2014
  • (2014)Interpreting Assays with Control Flow on Digital Microfluidic BiochipsACM Journal on Emerging Technologies in Computing Systems10.1145/256766910:3(1-30)Online publication date: 6-May-2014
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