Location via proxy:   [ UP ]  
[Report a bug]   [Manage cookies]                
skip to main content
10.1145/3297280.3299728acmconferencesArticle/Chapter ViewAbstractPublication PagessacConference Proceedingsconference-collections
research-article

BGrowth: an efficient approach for the segmentation of vertebral compression fractures in magnetic resonance imaging

Published: 08 April 2019 Publication History
  • Get Citation Alerts
  • Abstract

    Segmentation of medical images is a critical issue: several process of analysis and classification rely on this segmentation. With the growing number of people presenting back pain and problems related to it, the automatic or semi-automatic segmentation of fractured vertebral bodies became a challenging task. In general, those fractures present several regions with non-homogeneous intensities and the dark regions are quite similar to the structures nearby. Aimed at overriding this challenge, in this paper we present a semi-automatic segmentation method, called Balanced Growth (BGrowth). The experimental results on a dataset with 102 crushed and 89 normal vertebrae show that our approach significantly outperforms well-known methods from the literature. We have achieved an accuracy up to 95% while keeping acceptable processing time performance, that is equivalent to the state-of-the-art methods. Moreover, BGrowth presents the best results even with a rough (sloppy) manual annotation (seed points).

    References

    [1]
    S. Antani, L. R. Long, and G. R. Thoma. 2008. Bridging the Gap: Enabling CBIR in Medical Applications. In 2008 21st IEEE International Symposium on Computer-Based Medical Systems. 4--6.
    [2]
    P.D. Barbieri, G. V. Pedrosa, A. J. M. Traina, and M. H. Nogueira-Barbosa. 2015. Vertebral Body Segmentation of Spine MR Images Using Superpixels. In 28th IEEE International Symposium on Computer-Based Medical Systems, Caetano Traina Junior, Pedro Pereira Rodrigues, Bridget Kane, Paulo Mazzoncini de Azevedo Marques, and Agma Juci Machado Traina (Eds.). Conference Publishing Services (CPS), São Carlos and Ribeirão Preto, Brazil, 44--49.
    [3]
    P. Casti, A. Mencattini, M. H. Nogueira-Barbosa, L. Frighetto-Pereira, P. M. Azevedo-Marques, E. Martinelli, and C. Di Natale. 2017. Cooperative strategy for a dynamic ensemble of classification models in clinical applications: the case of MRI vertebral compression fractures. International Journal of Computer Assisted Radiology and Surgery 12, 11 (Nov 2017), 1971--1983.
    [4]
    Zukić Dženan, Vlasák Aleš, Egger Jan, Hořínek Daniel, Nimsky Christopher, and Kolb Andreas. 2014. Robust Detection and Segmentation for Diagnosis of Vertebral Diseases Using Routine MR Images. Computer Graphics Forum 33, 6 (2014), 190--204.
    [5]
    J. Egger, C. Nimsky, and X. Chen. 2017. Vertebral body segmentation with GrowCut: Initial experience, workflow and practical application. SAGE Open Med 5 (2017), 2050312117740984.
    [6]
    Ayman El-Baz, Garth M. Beache, Georgy Gimel'farb, Kenji Suzuki, Kazunori Okada, Ahmed Elnakib, Ahmed Soliman, and Behnoush Abdollahi. 2013. Computer-Aided Diagnosis Systems for Lung Cancer: Challenges and Methodologies. 2013 (2013), 942353. Exported from https://app.dimensions.ai on 2018/09/21.
    [7]
    S. Geman and D. Geman. 1984. Stochastic Relaxation, Gibbs Distributions, and the Bayesian Restoration of Images. IEEE Transactions on Pattern Analysis and Machine Intelligence PAMI-6, 6 (Nov 1984), 721--741.
    [8]
    Cyril Goutte and Eric Gaussier. 2005. A Probabilistic Interpretation of Precision, Recall and F-score, with Implication for Evaluation. In Proceedings of the 27th European Conference on Advances in Information Retrieval Research (ECIR'05). Berlin, Heidelberg, 345--359.
    [9]
    M. Hafri, R. Jennane, E. Lespessailles, and H. Toumi. 2016. Dual active contours model for HR-pQCT cortical bone segmentation. In 2016 23rd International Conference on Pattern Recognition (ICPR). 2270--2275.
    [10]
    M. Hafri, H. Toumi, S. Boutroy, R. D. Chapurlat, E. Lespessailles, and R. Jennane. 2016. Fuzzy energy based active contours model for HR-PQCT cortical bone segmentation. In 2016 IEEE International Conference on Image Processing (ICIP). 4334--4338.
    [11]
    Paul Jaccard. 1912. The Distribution of the Flora in the Alpine Zone. New Phytologist 11, 2 (Feb. 1912), 37--50.
    [12]
    José Raniery Ferreira Junior, Marcel Koenigkam-Santos, Federico Enrique Garcia Cipriano, Alexandre Todorovic Fabro, and Paulo Mazzoncini de Azevedo-Marques. 2018. Radiomics-based features for pattern recognition of lung cancer histopathology and metastases. Computer Methods and Programs in Biomedicine 159 (2018), 23 -- 30.
    [13]
    Yin Li, Jian Sun, Chi-Keung Tang, and Heung-Yeung Shum. 2004. Lazy Snapping. ACM Trans. Graph. 23, 3 (Aug. 2004), 303--308.
    [14]
    Yu-Wei Lu, Jian-Guo Jiang, Mei-Bin Qi, Shu Zhan, and Jie Yang. 2017. Segmentation method for medical image based on improved GrabCut. International Journal of Imaging Systems and Technology 27, 4 (2017), 383--390.
    [15]
    F. J. Massey. 1951. The Kolmogorov-Smirnov test for goodness of fit. J. Amer. Statist. Assoc. 46, 253 (1951), 68--78.
    [16]
    R. Z. Megale, A. Pollack, H. Britt, J. Latimer, V. Naganathan, A. J. McLachlan, and M. L. Ferreira. 2017. Management of vertebral compression fracture in general practice: BEACH program. PLoS ONE 12, 5 (2017), e0176351.
    [17]
    Permsak Paholpak, Alexander Nazareth, Yusuf A. Khan, Sameer U. Khan, Faisal Ansari, Koji Tamai, Zorica Buser, and Jeffrey C. Wang. 2018. Evaluation of foraminal cross-sectional area in lumbar spondylolisthesis using kinematic MRI. European Journal of Orthopaedic Surgery & Traumatology (27 Jul 2018).
    [18]
    Jonathan S. Ramos, Carolina Y.V. Watanabe, Caetano Traina, and Agma J.M. Traina. 2017. How to speed up outliers removal in image matching. Pattern Recognition Letters (2017).
    [19]
    J. S. Ramos, C. Y. V. Watanabe, and A. J. M. Traina. 2016. FOMP: A Novel Preprocessing Technique to Speed-Up the Outlier Removal from Matched Points. In 2016 29th SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI). 225--232.
    [20]
    Carsten Rother, Vladimir Kolmogorov, and Andrew Blake. 2004. GrabCut: Interactive Foreground Extraction Using Iterated Graph Cuts. ACM Trans. Graph. 23, 3 (Aug. 2004), 309--314.
    [21]
    A. Soliman, A. Shaffie, M. Ghazal, G. Gimel'farb, R. Keynton, and A. El-Baz. 2018. A Novel CNN Segmentation Framework Based on Using New Shape and Appearance Features. In 2018 25th IEEE International Conference on Image Processing (ICIP). 3488--3492.
    [22]
    T.J. Sørensen. 1948. A Method of Establishing Groups of Equal Amplitude in Plant Sociology Based on Similarity of Species Content and Its Application to Analyses of the Vegetation on Danish Commons. I kommission hos E. Munksgaard.
    [23]
    Jamshid Tehranzadeh and Cliff Tao. 2004. Advances in MR imaging of vertebral collapse. Seminars in Ultrasound, CT and MRI 25, 6 (2004), 440 -- 460. Imaging of Low Back Pain.
    [24]
    M Uetani, R Hashmi, and K Hayashi. 2004. Malignant and benign compression fractures: differentiation and diagnostic pitfalls on MRI. Clinical Radiology 59, 2 (2004), 124 -- 131.
    [25]
    Vladimir Vezhnevets and Vadim Konouchine. 2005. GrowCut - Interactive Multi-Label N-D Image Segmentation By Cellular Automata. International Conference on Computer Graphics and Vision - GraphiCon 1 (Nov 2005).
    [26]
    F. Wilcoxon, S.K. Katti, and R.A. Wilcox. 1970. Critical values and probability levels for the Wilcoxon rank sum test and the Wilcoxon signed rank test. Selected Tables in Mathematical Statistics 1 (1970), 171--259.
    [27]
    S. Wu, M. Nakao, and T. Matsuda. 2016. Automatic GrabCut based lung extraction from endoscopic images with an initial boundary. In 2016 IEEE 13th International Conference on Signal Processing (ICSP). 1374--1378.
    [28]
    Zhang Yong, Yuan Jiazheng, Liu Hongzhe, and Li Qing. 2017. GrabCut image segmentation algorithm based on structure tensor. The Journal of China Universities of Posts and Telecommunications 24, 2 (2017), 38 -- 47.
    [29]
    W. T. Zhao, D. P. Qin, X. G. Zhang, Z. P. Wang, and Z. Tong. 2018. Biomechanical effects of different vertebral heights after augmentation of osteoporotic vertebral compression fracture: a three-dimensional finite element analysis. J Orthop Surg Res 13, 1 (Feb 2018), 32.
    [30]
    Liangija Zhu, Ivan Kolesov, Yi Gao, Ron Kikinis, and Allen Tannenbaum. 2014. An Effective Interactive Medical Image Segmentation Method using Fast GrowCut. International Conference Med Image Comput Comput Assist Interv. Workshop on Interactive Methods. 17, WS.

    Cited By

    View all
    • (2023)A 3D Radiomics-Based Artificial Neural Network Model for Benign Versus Malignant Vertebral Compression Fracture Classification in MRIJournal of Digital Imaging10.1007/s10278-023-00847-436:4(1565-1577)Online publication date: 30-May-2023
    • (2020)Biomechanical Properties of Metastatically Involved Osteolytic BoneCurrent Osteoporosis Reports10.1007/s11914-020-00633-z18:6(705-715)Online publication date: 19-Oct-2020
    • (2020)3D Convolutional Sequence to Sequence Model for Vertebral Compression Fractures Identification in CTMedical Image Computing and Computer Assisted Intervention – MICCAI 202010.1007/978-3-030-59725-2_72(743-752)Online publication date: 4-Oct-2020
    • Show More Cited By

    Index Terms

    1. BGrowth: an efficient approach for the segmentation of vertebral compression fractures in magnetic resonance imaging

        Recommendations

        Comments

        Information & Contributors

        Information

        Published In

        cover image ACM Conferences
        SAC '19: Proceedings of the 34th ACM/SIGAPP Symposium on Applied Computing
        April 2019
        2682 pages
        ISBN:9781450359337
        DOI:10.1145/3297280
        Permission to make digital or hard copies of all or part of this work for personal or classroom use is granted without fee provided that copies are not made or distributed for profit or commercial advantage and that copies bear this notice and the full citation on the first page. Copyrights for components of this work owned by others than ACM must be honored. Abstracting with credit is permitted. To copy otherwise, or republish, to post on servers or to redistribute to lists, requires prior specific permission and/or a fee. Request permissions from [email protected]

        Sponsors

        Publisher

        Association for Computing Machinery

        New York, NY, United States

        Publication History

        Published: 08 April 2019

        Permissions

        Request permissions for this article.

        Check for updates

        Author Tags

        1. image segmentation
        2. magnetic resonance imaging
        3. vertebral compression fractures

        Qualifiers

        • Research-article

        Funding Sources

        Conference

        SAC '19
        Sponsor:

        Acceptance Rates

        Overall Acceptance Rate 1,650 of 6,669 submissions, 25%

        Contributors

        Other Metrics

        Bibliometrics & Citations

        Bibliometrics

        Article Metrics

        • Downloads (Last 12 months)4
        • Downloads (Last 6 weeks)0
        Reflects downloads up to 27 Jul 2024

        Other Metrics

        Citations

        Cited By

        View all
        • (2023)A 3D Radiomics-Based Artificial Neural Network Model for Benign Versus Malignant Vertebral Compression Fracture Classification in MRIJournal of Digital Imaging10.1007/s10278-023-00847-436:4(1565-1577)Online publication date: 30-May-2023
        • (2020)Biomechanical Properties of Metastatically Involved Osteolytic BoneCurrent Osteoporosis Reports10.1007/s11914-020-00633-z18:6(705-715)Online publication date: 19-Oct-2020
        • (2020)3D Convolutional Sequence to Sequence Model for Vertebral Compression Fractures Identification in CTMedical Image Computing and Computer Assisted Intervention – MICCAI 202010.1007/978-3-030-59725-2_72(743-752)Online publication date: 4-Oct-2020
        • (2019)Fast and Smart Segmentation of Paraspinal Muscles in Magnetic Resonance Imaging with CleverSeg2019 32nd SIBGRAPI Conference on Graphics, Patterns and Images (SIBGRAPI)10.1109/SIBGRAPI.2019.00019(76-83)Online publication date: Oct-2019
        • (2019)3DBGrowth: Volumetric Vertebrae Segmentation and Reconstruction in Magnetic Resonance Imaging2019 IEEE 32nd International Symposium on Computer-Based Medical Systems (CBMS)10.1109/CBMS.2019.00091(435-440)Online publication date: Jun-2019

        View Options

        Get Access

        Login options

        View options

        PDF

        View or Download as a PDF file.

        PDF

        eReader

        View online with eReader.

        eReader

        Media

        Figures

        Other

        Tables

        Share

        Share

        Share this Publication link

        Share on social media