Exploring the maize rhizosphere microbiome in the field: A glimpse into a highly complex system
release_k7qpmbg2ybhofnv2sj66xyiohu
by
Jason A. Peiffer, Ruth E. Ley
References
NOTE: currently batch computed and may include additional references sources, or be missing recent changes, compared to entity reference list.Showing 1 - 26 of 26 references (in 229ms) | ||
---|---|---|
[b0] via grobid |
USDA. World Corn Production, Consumption, and Stocks, http://www.fas.usda.gov/grain/grain.asp (2013).
| |
[b1] via grobid |
Entering the second century of maize quantitative genetics
J G Wallace, S J Larsson, E S Buckler 2013 Heredity doi:10.1038/hdy.2013.6 pmcid:PMC3860165 pmid:23462502 |
web.archive.org [PDF]
|
[b2] via grobid |
The rhizosphere microbiome and plant health
Roeland L. Berendsen, Corné M.J. Pieterse, Peter A.H.M. Bakker 2012 Trends in Plant Science doi:10.1016/j.tplants.2012.04.001 pmid:22564542 |
web.archive.org [PDF]
|
[R4] via crossref |
Community analysis of arbuscular mycorrhizal fungi and bacteria in the maize mycorrhizosphere in a long-term fertilization trial
Jonas F. Toljander, Juan C. Santos-González, Anders Tehler, Roger D. Finlay 2008 FEMS Microbiology Ecology doi:10.1111/j.1574-6941.2008.00512.x pmid:18547325 |
web.archive.org [PDF]
|
[R5] via crossref |
Growth Promotion of Maize (Zea maysL.) by Plant-Growth-Promoting Rhizobacteria under Field Conditions
Ahmad Gholami, Atena Biyari, Manoochehr Gholipoor, Hadi Asadi Rahmani 2012 Communications in Soil Science and Plant Analysis doi:10.1080/00103624.2012.666302 | |
[b5] via grobid |
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
R I Amann, W Ludwig, K H Schleifer 1995 Microbiological reviews pmcid:PMC239358 pmid:7535888 |
web.archive.org [PDF]
|
[b6] via grobid |
Faith DP, Baker AM. Phylogenetic diversity (PD) and biodiversity conservation: some bioinformatics challenges. Bioinf. Online, 70-77 (2006).
| |
[b7] via grobid |
Lozupone C, Knight R. UniFrac: a new phyloge- netic method for comparing microbial communi- ties. Appl Environ Microbiol 2005; 71:8228-35;
| |
[R9] via crossref |
Unravelling the effects of the environment and host genotype on the gut microbiome
Aymé Spor, Omry Koren, Ruth Ley 2011 Nature Reviews Microbiology doi:10.1038/nrmicro2540 pmid:21407244 |
web.archive.org [PDF]
|
[R10] via crossref |
Interactions between arbuscular mycorrhizal fungi and soil bacteria
Mohammad Miransari 2010 Applied Microbiology and Biotechnology doi:10.1007/s00253-010-3004-6 pmid:21104242 |
web.archive.org [PDF]
|
[R11] via crossref |
Diversity and heritability of the maize rhizosphere microbiome under field conditions
J. A. Peiffer, A. Spor, O. Koren, Z. Jin, S. G. Tringe, J. L. Dangl, E. S. Buckler, R. E. Ley 2013 Proceedings of the National Academy of Sciences of the United States of America doi:10.1073/pnas.1302837110 pmcid:PMC3631645 pmid:23576752 |
web.archive.org [PDF]
|
[b11] via grobid |
Dynamics of Seed-Borne Rice Endophytes on Early Plant Growth Stages
Pablo R. Hardoim, Cristiane C. P. Hardoim, Leonard S. van Overbeek, Jan Dirk van Elsas, Scott E. Baker 2012 PLoS ONE doi:10.1371/journal.pone.0030438 pmcid:PMC3281832 pmid:22363438 |
web.archive.org [PDF]
|
[b12] via grobid |
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, et al. QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010; 7:335-6; PMID:20383131;
| |
[R14] via crossref |
QIIME allows analysis of high-throughput community sequencing data
J Gregory Caporaso, Justin Kuczynski, Jesse Stombaugh, Kyle Bittinger, Frederic D Bushman, Elizabeth K Costello, Noah Fierer, Antonio Gonzalez Peña (+ more) 2010 Nature Methods doi:10.1038/nmeth.f.303 pmcid:PMC3156573 pmid:20383131 |
web.archive.org [PDF]
|
[R15] via crossref |
CANONICAL ANALYSIS OF PRINCIPAL COORDINATES: A USEFUL METHOD OF CONSTRAINED ORDINATION FOR ECOLOGY
Marti J. Anderson, Trevor J. Willis 2003 Ecology doi:10.1890/0012-9658(2003)084[0511:caopca]2.0.co;2 | |
[R16] via crossref |
Nonparametric estimation of the number of classes in a population
Chao 1984 Scand J Stat volume:11 | |
[R17] via crossref |
Phylogenetic Diversity (PD) and Biodiversity Conservation: Some Bioinformatics Challenges
Daniel P. Faith, Andrew M. Baker 2006 Evolutionary Bioinformatics doi:10.1177/117693430600200007 |
web.archive.org [PDF]
|
[R18] via crossref |
UniFrac: a New Phylogenetic Method for Comparing Microbial Communities
C. Lozupone, R. Knight 2005 Applied and Environmental Microbiology doi:10.1128/aem.71.12.8228-8235.2005 pmcid:PMC1317376 pmid:16332807 |
web.archive.org [PDF]
|
[R19] via crossref |
A Primer on Metagenomics
John C. Wooley, Adam Godzik, Iddo Friedberg, Philip E. Bourne 2010 PLoS Computational Biology doi:10.1371/journal.pcbi.1000667 pmcid:PMC2829047 pmid:20195499 |
web.archive.org [PDF]
|
[b19] via grobid |
Defining the core Arabidopsis thaliana root microbiome
Derek S. Lundberg, Sarah L. Lebeis, Sur Herrera Paredes, Scott Yourstone, Jase Gehring, Stephanie Malfatti, Julien Tremblay, Anna Engelbrektson (+ more) 2012 Nature doi:10.1038/nature11237 pmcid:PMC4074413 pmid:22859206 |
web.archive.org [PDF]
|
[b20] via grobid |
Spor A, Koren O, Ley R. Unravelling the effects of the environment and host genotype on the gut microbiome. Nat Rev Microbiol 2011; 9:279-90;
| |
[b21] via grobid |
PMID:21407244; http://dx.doi.org/10.1038/nrmi- cro2540
| |
[b22] via grobid |
Miransari M. Interactions between arbuscular mycorrhizal fungi and soil bacteria. Appl Microbiol Biotechnol 2011; 89:917-30; PMID:21104242;
| |
[b23] via grobid |
http://dx.doi.org/10.1007/s00253-010-3004-6
| |
[b24] via grobid |
Peiffer JA, Spor A, Koren O, Jin Z, Tringe SG, Dangl JL, et al. Diversity and heritability of the maize rhizo- sphere microbiome under field conditions. Proc Natl Acad Sci USA 2013; 110:6548-53; PMID:23576752;
| |
[b25] via grobid |
http://dx.doi.org/10.1073/pnas.1302837110
| |