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1. GRCH38_gatk_bundle GRCH38_gatk_bundle Public

   liftover version of the gatk resource bundle for the new assembling GRCH38 (primary assembling, no alt contigs or decoy sequences).

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2. gatk_varcall gatk_varcall Public

   GATK best practice variant calling pipeline

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3. bwamapping bwamapping Public

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4. flu_seq flu_seq Public

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5. ndarpy ndarpy Public

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6. unmap2fq unmap2fq Public

   Short pipeline that abstract unmapped reads from a bam file and convert to fastq files (PE reads)

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